Wall clock time and date at job start Sun Mar 29 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 H 1.09002 * 109.47402 * 56.26784 * 3 2 1 5 5 C 1.50701 * 109.47147 * 176.26489 * 3 2 1 6 6 H 1.08001 * 120.00396 * 119.99904 * 5 3 2 7 7 C 1.37886 * 120.00156 * 299.99879 * 5 3 2 8 8 N 1.31504 * 120.00016 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99655 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47331 * 89.99671 * 9 7 5 11 11 H 1.48499 * 109.46786 * 210.00053 * 9 7 5 12 12 H 1.48505 * 109.47109 * 329.99612 * 9 7 5 13 13 N 1.46895 * 109.47037 * 296.26102 * 3 2 1 14 14 C 1.46907 * 110.99776 * 148.18469 * 13 3 2 15 15 C 1.47202 * 109.54039 * 54.59023 * 14 13 3 16 16 N 5.02347 * 113.32332 * 0.60883 * 2 1 3 17 17 C 1.53170 * 109.54647 * 294.41395 * 14 13 3 18 18 C 1.53101 * 109.15773 * 183.24312 * 17 14 13 19 19 O 1.42901 * 109.48962 * 57.47192 * 18 17 14 20 20 C 1.42901 * 114.09814 * 298.88790 * 19 18 17 21 21 C 1.53092 * 109.41118 * 61.15852 * 20 19 18 22 22 H 1.08999 * 109.46855 * 295.31924 * 1 2 3 23 23 H 1.09004 * 109.46457 * 55.31123 * 1 2 3 24 24 H 1.08994 * 109.47587 * 175.31387 * 1 2 3 25 25 H 1.09000 * 109.46746 * 120.00257 * 2 1 3 26 26 H 1.09003 * 109.47157 * 239.99661 * 2 1 3 27 27 H 0.97008 * 119.99732 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00305 * 272.13691 * 13 3 2 29 29 H 1.09000 * 109.52118 * 303.05795 * 17 14 13 30 30 H 1.08998 * 109.52325 * 63.24432 * 17 14 13 31 31 H 1.09002 * 109.40668 * 297.48813 * 18 17 14 32 32 H 1.09007 * 109.49153 * 177.50697 * 18 17 14 33 33 H 1.08994 * 109.48248 * 301.17756 * 20 19 18 34 34 H 1.08996 * 109.49065 * 181.14170 * 20 19 18 35 35 H 1.09006 * 109.51992 * 182.48579 * 21 20 19 36 36 H 1.08997 * 109.57876 * 62.32866 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6232 1.9753 0.8546 5 6 3.5442 1.4434 0.0926 6 1 4.1333 1.8936 -0.6927 7 6 4.1684 0.8694 1.1798 8 7 5.4810 0.8697 1.2603 9 14 3.1495 0.0899 2.5377 10 1 2.9221 -1.3438 2.2251 11 1 3.8738 0.2063 3.8288 12 1 1.8426 0.7879 2.6386 13 7 1.6255 2.1083 -1.2420 14 6 1.3941 3.5418 -1.0188 15 6 2.5933 4.1462 -0.4161 16 7 3.5189 4.6127 0.0490 17 6 0.1991 3.7276 -0.0788 18 6 -0.0848 5.2233 0.0833 19 8 -0.3270 5.8044 -1.1995 20 6 0.7749 5.7027 -2.1036 21 6 1.0919 4.2263 -2.3554 22 1 -0.3633 0.4395 0.9289 23 1 -0.3632 0.5849 -0.8451 24 1 -0.3634 -1.0241 -0.0840 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 5.9201 0.4656 2.0251 28 1 2.3034 1.9614 -1.9748 29 1 -0.6769 3.2357 -0.5016 30 1 0.4291 3.2916 0.8934 31 1 0.7759 5.7074 0.5450 32 1 -0.9617 5.3606 0.7161 33 1 1.6468 6.1929 -1.6707 34 1 0.5174 6.1851 -3.0465 35 1 1.9599 4.1466 -3.0099 36 1 0.2352 3.7439 -2.8261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:10 Heat of formation + Delta-G solvation = -40.739549 kcal Electronic energy + Delta-G solvation = -18089.820980 eV Core-core repulsion = 15380.144601 eV Total energy + Delta-G solvation = -2709.676379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10435 -38.37418 -36.81274 -35.09945 -33.89684 -32.15131 -31.42538 -28.68675 -25.51195 -24.84145 -24.01779 -22.62296 -21.54453 -19.20638 -17.92187 -17.58627 -17.11124 -16.83802 -16.03435 -15.65645 -15.44747 -14.93486 -14.85601 -14.60236 -14.03664 -13.97457 -13.60488 -13.35111 -13.27072 -13.24386 -12.90109 -12.75606 -12.51673 -12.23172 -12.13290 -11.62793 -11.53595 -11.42674 -11.33719 -11.05636 -10.74073 -10.54841 -9.52070 -8.36062 -6.40029 1.24222 1.28725 1.38138 1.91753 1.98748 2.24834 2.92769 2.94932 3.00129 3.39864 3.72319 3.85334 4.01525 4.28603 4.38589 4.43551 4.52319 4.52886 4.70197 4.77570 4.78757 4.84994 4.93958 5.08053 5.17060 5.18945 5.25758 5.33602 5.48044 5.48876 5.71130 5.93823 6.20456 6.24962 6.45967 6.70668 6.77080 7.27097 8.80678 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.009433 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.918052 B = 2967.554617 C = 3353.744180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.182 3.818 4 H 0.033 0.967 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.944 3.056 10 H -0.261 1.261 11 H -0.310 1.310 12 H -0.241 1.241 13 N -0.632 5.632 14 C 0.209 3.791 15 C 0.201 3.799 16 N -0.486 5.486 17 C -0.135 4.135 18 C 0.061 3.939 19 O -0.381 6.381 20 C 0.059 3.941 21 C -0.133 4.133 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.344 0.656 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.127 0.873 33 H 0.027 0.973 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 4.428 -6.075 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.073 3.927 4 H 0.050 0.950 5 C -0.571 4.571 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.187 1.187 11 H -0.238 1.238 12 H -0.165 1.165 13 N -0.261 5.261 14 C 0.113 3.887 15 C -0.119 4.119 16 N -0.163 5.163 17 C -0.174 4.174 18 C -0.016 4.016 19 O -0.300 6.300 20 C -0.018 4.018 21 C -0.172 4.172 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.145 0.855 33 H 0.046 0.954 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.962 4.974 -5.275 17.531 hybrid contribution 1.961 -0.573 1.063 2.303 sum -14.001 4.400 -4.212 15.268 Atomic orbital electron populations 1.21694 0.93807 1.01578 1.02346 1.21725 0.97091 0.96808 0.99735 1.19582 0.91052 0.92745 0.89335 0.94953 1.21897 0.92501 1.36727 1.05952 0.95280 1.25849 0.95567 0.96407 1.00672 1.70081 1.10401 1.46739 1.31504 0.85933 0.79545 0.80059 0.77375 1.18660 1.23838 1.16454 1.61146 1.50304 1.05656 1.08956 1.19187 0.85245 0.87990 0.96242 1.31127 0.95463 0.92265 0.93033 1.81064 1.12573 1.12584 1.10032 1.22350 0.97423 0.98168 0.99413 1.22691 1.02122 0.91184 0.85645 1.87906 1.39004 1.79213 1.23827 1.22737 0.89085 0.94999 0.95028 1.22320 1.05075 0.96281 0.93510 0.93740 0.89964 0.92678 0.95413 0.92344 0.92949 0.83744 0.85945 0.91406 0.95560 0.85495 0.95415 0.85059 0.89856 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.85 71.98 0.71 -3.19 16 2 C -0.12 -4.38 5.12 30.59 0.16 -4.23 16 3 C 0.18 7.61 1.03 44.17 0.05 7.65 16 4 H 0.03 1.42 4.77 -2.39 -0.01 1.41 16 5 C -0.53 -28.93 7.59 25.60 0.19 -28.74 16 6 H 0.03 1.80 7.69 -2.91 -0.02 1.77 16 7 C 0.01 0.76 5.45 84.66 0.46 1.22 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.94 45.07 24.40 68.60 1.67 46.75 16 10 H -0.26 -11.72 6.84 99.48 0.68 -11.04 16 11 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 12 H -0.24 -10.42 6.53 99.48 0.65 -9.77 16 13 N -0.63 -20.98 5.25 -460.47 -2.42 -23.40 16 14 C 0.21 6.29 0.67 1.84 0.00 6.29 16 15 C 0.20 8.12 9.38 89.44 0.84 8.96 16 16 N -0.49 -23.46 18.51 20.01 0.37 -23.09 16 17 C -0.13 -3.46 4.81 30.68 0.15 -3.31 16 18 C 0.06 1.42 6.61 72.02 0.48 1.90 16 19 O -0.38 -8.81 10.77 -148.98 -1.60 -10.42 16 20 C 0.06 1.25 6.61 72.01 0.48 1.72 16 21 C -0.13 -2.92 5.10 30.69 0.16 -2.76 16 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 2.09 7.58 -2.38 -0.02 2.07 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.03 1.15 3.22 -2.39 -0.01 1.15 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 28 H 0.34 11.91 8.18 -89.69 -0.73 11.18 16 29 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 1.98 6.36 -2.39 -0.02 1.97 16 31 H 0.03 0.73 7.39 -2.39 -0.02 0.71 16 32 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.03 0.71 7.38 -2.39 -0.02 0.69 16 34 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.20 281.62 2.25 -68.95 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.27 Total: 16.05 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.66 Total: -14.48 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -1.75 Total: -106.85 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.60 Total: -10.42 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.75 kcal Total: -71.20 2.25 -68.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.206 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds