Wall clock time and date at job start Sun Mar 29 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 3 7 7 N 1.30269 * 126.28137 * 90.02583 * 6 5 4 8 8 N 1.28667 * 109.37908 * 179.97438 * 7 6 5 9 9 C 1.30271 * 109.38447 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.28485 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47190 * 89.97509 * 10 9 8 12 12 C 1.50700 * 109.47190 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99754 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99693 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99569 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00304 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47337 * 89.99810 * 16 14 12 18 18 H 1.48494 * 109.47179 * 209.99912 * 16 14 12 19 19 H 1.48497 * 109.47043 * 330.00178 * 16 14 12 20 20 O 1.34365 * 107.43435 * 359.75587 * 9 8 7 21 21 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 22 22 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 23 23 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 25 25 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 26 26 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 28 28 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 29 29 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 30 30 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 31 31 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 32 32 H 1.08996 * 109.47230 * 209.97303 * 10 9 8 33 33 H 1.08993 * 109.47144 * 329.97267 * 10 9 8 34 34 H 1.08996 * 109.46866 * 300.00017 * 11 10 9 35 35 H 1.09006 * 109.46955 * 59.99807 * 11 10 9 36 36 H 0.97001 * 119.99476 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.5868 2.8852 0.0013 7 7 6.3577 2.8862 -1.0488 8 7 7.5888 2.8865 -0.6748 9 6 7.6452 2.8851 0.6267 10 6 8.8975 2.8844 1.4651 11 6 9.3215 4.3266 1.7499 12 6 10.5734 4.3259 2.5888 13 1 11.0215 3.3903 2.8892 14 6 11.1466 5.5196 2.9727 15 7 12.2389 5.5189 3.7053 16 14 10.3711 7.1378 2.4537 17 1 9.3866 7.5665 3.4795 18 1 11.4278 8.1724 2.3189 19 1 9.6823 6.9609 1.1501 20 8 6.3819 2.8894 1.0845 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6765 1.9563 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.9336 0.9287 -0.8892 29 1 3.9330 0.9289 0.8907 30 1 3.7168 3.3993 -0.8886 31 1 3.7162 3.3987 0.8913 32 1 8.7042 2.3700 2.4064 33 1 9.6944 2.3708 0.9274 34 1 9.5148 4.8410 0.8085 35 1 8.5245 4.8402 2.2876 36 1 12.6424 6.3588 3.9751 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256097489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:35 Heat of formation + Delta-G solvation = -3.869778 kcal Electronic energy + Delta-G solvation = -16081.056150 eV Core-core repulsion = 13372.978564 eV Total energy + Delta-G solvation = -2708.077586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.88434 -36.78700 -35.81166 -34.60538 -33.31829 -31.96194 -29.78367 -27.36280 -25.70621 -23.31515 -22.54670 -21.55309 -21.34825 -20.65987 -17.21231 -16.92188 -16.56848 -16.07589 -15.17926 -14.52436 -14.30486 -13.91349 -13.75948 -13.68467 -13.35276 -12.75721 -12.44497 -12.20762 -12.08093 -11.74756 -11.57252 -11.40329 -11.30847 -11.23294 -11.12778 -10.86207 -10.73406 -10.42491 -10.22988 -9.88809 -9.38100 -9.02719 -8.63919 -6.14581 -4.15168 1.47470 2.56710 2.70814 3.25689 3.33941 3.38632 4.02589 4.37300 4.46484 4.51787 4.69217 4.71516 4.93079 5.00084 5.11199 5.18987 5.23031 5.38566 5.46676 5.48439 5.53221 5.69747 5.73231 5.78283 5.84292 5.89504 5.98324 6.03402 6.03868 6.07334 6.44432 7.00664 7.15288 7.60482 8.37471 8.64424 8.87211 9.46084 10.98018 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047689 B = 0.003784 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.998523 B = 7397.866399 C = 7458.986690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.018 4.018 6 C 0.138 3.862 7 N -0.289 5.289 8 N -0.303 5.303 9 C 0.192 3.808 10 C -0.016 4.016 11 C -0.008 4.008 12 C -0.526 4.526 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.265 1.265 20 O -0.226 6.226 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.452 -8.048 -5.828 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.073 4.073 7 N -0.135 5.135 8 N -0.149 5.149 9 C -0.018 4.018 10 C -0.055 4.055 11 C -0.046 4.046 12 C -0.564 4.564 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.190 1.190 20 O -0.105 6.105 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.926 -7.925 -6.984 23.441 hybrid contribution -0.604 0.990 1.017 1.542 sum -21.530 -6.935 -5.967 23.393 Atomic orbital electron populations 1.21778 0.95831 1.01608 1.01828 1.21531 0.95861 0.96729 1.02259 1.21603 0.94189 0.97260 1.02539 1.21640 0.95959 0.94676 1.03405 1.20125 0.80647 0.99544 1.05399 1.27805 0.97372 1.01920 0.80212 1.74284 0.96467 1.16844 1.25942 1.74407 1.11518 1.19258 1.09673 1.28936 0.85333 0.95772 0.91791 1.20504 0.85237 1.02933 0.96785 1.19629 0.97513 0.89685 0.97782 1.20931 1.08196 0.94971 1.32255 0.90384 1.24951 0.94592 0.99117 0.94336 1.69894 1.19872 1.27173 1.36528 0.86816 0.79318 0.83663 0.79811 1.20154 1.21035 1.18993 1.84804 1.17955 1.69624 1.38157 0.92719 0.92726 0.92817 0.91897 0.91920 0.91567 0.91490 0.90904 0.91279 0.87502 0.88711 0.89009 0.87440 0.95473 0.96537 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.78 5.21 -26.73 -0.14 -0.92 16 4 C -0.12 -1.01 5.20 -26.73 -0.14 -1.15 16 5 C -0.02 -0.18 5.84 -27.88 -0.16 -0.35 16 6 C 0.14 2.16 7.73 -12.94 -0.10 2.06 16 7 N -0.29 -5.33 12.22 32.55 0.40 -4.93 16 8 N -0.30 -6.18 12.22 32.55 0.40 -5.78 16 9 C 0.19 3.71 7.73 -12.94 -0.10 3.61 16 10 C -0.02 -0.31 5.78 -27.88 -0.16 -0.47 16 11 C -0.01 -0.18 4.02 -27.88 -0.11 -0.30 16 12 C -0.53 -14.49 9.66 -34.44 -0.33 -14.83 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 16 Si 0.88 21.58 27.47 -169.99 -4.67 16.92 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 20 O -0.23 -3.99 10.87 5.37 0.06 -3.93 16 21 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 33 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 34 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 35 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -31.70 306.91 -5.40 -37.10 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -5.85 Total: -5.85 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.14 Total: -11.88 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 1.57 Total: -36.98 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.06 Total: -3.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.70 -5.40 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256097489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.235 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds