Wall clock time and date at job start Sun Mar 29 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 3 7 7 N 1.30269 * 126.28137 * 90.02583 * 6 5 4 8 8 N 1.28667 * 109.37908 * 179.97438 * 7 6 5 9 9 C 1.30271 * 109.38447 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.28485 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47190 * 89.97509 * 10 9 8 12 12 C 1.50700 * 109.47190 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99754 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99693 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99569 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00304 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47337 * 89.99810 * 16 14 12 18 18 H 1.48494 * 109.47179 * 209.99912 * 16 14 12 19 19 H 1.48497 * 109.47043 * 330.00178 * 16 14 12 20 20 O 1.34365 * 107.43435 * 359.75587 * 9 8 7 21 21 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 22 22 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 23 23 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 25 25 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 26 26 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 28 28 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 29 29 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 30 30 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 31 31 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 32 32 H 1.08996 * 109.47230 * 209.97303 * 10 9 8 33 33 H 1.08993 * 109.47144 * 329.97267 * 10 9 8 34 34 H 1.08996 * 109.46866 * 300.00017 * 11 10 9 35 35 H 1.09006 * 109.46955 * 59.99807 * 11 10 9 36 36 H 0.97001 * 119.99476 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.5868 2.8852 0.0013 7 7 6.3577 2.8862 -1.0488 8 7 7.5888 2.8865 -0.6748 9 6 7.6452 2.8851 0.6267 10 6 8.8975 2.8844 1.4651 11 6 9.3215 4.3266 1.7499 12 6 10.5734 4.3259 2.5888 13 1 11.0215 3.3903 2.8892 14 6 11.1466 5.5196 2.9727 15 7 12.2389 5.5189 3.7053 16 14 10.3711 7.1378 2.4537 17 1 9.3866 7.5665 3.4795 18 1 11.4278 8.1724 2.3189 19 1 9.6823 6.9609 1.1501 20 8 6.3819 2.8894 1.0845 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6765 1.9563 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.9336 0.9287 -0.8892 29 1 3.9330 0.9289 0.8907 30 1 3.7168 3.3993 -0.8886 31 1 3.7162 3.3987 0.8913 32 1 8.7042 2.3700 2.4064 33 1 9.6944 2.3708 0.9274 34 1 9.5148 4.8410 0.8085 35 1 8.5245 4.8402 2.2876 36 1 12.6424 6.3588 3.9751 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256097489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:34 Heat of formation + Delta-G solvation = -26.275433 kcal Electronic energy + Delta-G solvation = -16082.027732 eV Core-core repulsion = 13372.978564 eV Total energy + Delta-G solvation = -2709.049168 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.27410 -37.46090 -37.21876 -36.29778 -34.53178 -33.58577 -31.10766 -28.54224 -27.18010 -24.32575 -24.15557 -22.52229 -22.40980 -21.88585 -19.17844 -18.33524 -17.99514 -16.72543 -16.39391 -16.24281 -15.67521 -15.16894 -14.83458 -14.71722 -14.42949 -14.23972 -13.64116 -13.49828 -13.06380 -13.03429 -12.95654 -12.80957 -12.44173 -12.22088 -12.03772 -11.91866 -11.84540 -11.76474 -11.68175 -11.49916 -11.36921 -10.81152 -10.44523 -8.33376 -6.38502 0.12560 1.25722 1.30442 1.32300 1.35651 1.45912 2.31829 2.83085 3.01604 3.40067 3.77882 3.85410 4.06921 4.08756 4.27850 4.33500 4.35278 4.39019 4.44722 4.49788 4.70805 4.75970 4.80291 4.84805 4.94675 5.04150 5.08467 5.16072 5.21303 5.29303 5.34299 5.44637 5.52567 5.52826 6.18813 6.68262 7.24542 7.26240 8.82328 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047689 B = 0.003784 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.998523 B = 7397.866399 C = 7458.986690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.019 4.019 6 C 0.161 3.839 7 N -0.321 5.321 8 N -0.325 5.325 9 C 0.182 3.818 10 C -0.006 4.006 11 C -0.002 4.002 12 C -0.531 4.531 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.941 5.941 16 Si 0.941 3.059 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.259 1.259 20 O -0.229 6.229 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.018 0.982 35 H 0.021 0.979 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.045 -7.483 -6.216 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.151 4.151 5 C -0.058 4.058 6 C -0.050 4.050 7 N -0.166 5.166 8 N -0.171 5.171 9 C -0.030 4.030 10 C -0.045 4.045 11 C -0.041 4.041 12 C -0.569 4.569 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.581 5.581 16 Si 0.765 3.235 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.183 1.183 20 O -0.109 6.109 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.538 -7.374 -7.390 25.749 hybrid contribution 0.139 0.717 1.133 1.347 sum -23.399 -6.657 -6.258 25.120 Atomic orbital electron populations 1.21772 0.95182 1.01866 1.02170 1.21544 0.96435 0.96698 1.01940 1.21566 0.92388 0.97471 1.03526 1.21596 0.97387 0.93451 1.02669 1.20572 0.76746 1.00916 1.07537 1.28960 0.98994 0.98103 0.78953 1.74243 0.96146 1.19155 1.27048 1.74345 1.12901 1.19573 1.10266 1.28617 0.85812 0.97049 0.91492 1.20252 0.85861 1.00525 0.97817 1.19472 0.95772 0.92400 0.96414 1.21233 1.09422 0.94007 1.32200 0.93040 1.25826 0.95097 1.02980 0.94471 1.70022 1.21576 1.28306 1.38212 0.85799 0.78708 0.79203 0.79829 1.18800 1.20569 1.18323 1.84816 1.17562 1.69742 1.38805 0.92382 0.92363 0.92685 0.92289 0.92279 0.90537 0.90528 0.91906 0.91879 0.85530 0.86323 0.87461 0.87095 0.96346 0.96023 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.42 5.93 30.60 0.18 -1.24 16 3 C -0.11 -1.16 5.21 30.59 0.16 -1.00 16 4 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 5 C -0.02 -0.33 5.84 29.85 0.17 -0.15 16 6 C 0.16 4.69 7.73 88.34 0.68 5.37 16 7 N -0.32 -11.45 12.22 -165.50 -2.02 -13.47 16 8 N -0.33 -13.04 12.22 -165.50 -2.02 -15.06 16 9 C 0.18 6.83 7.73 88.34 0.68 7.51 16 10 C -0.01 -0.23 5.78 29.85 0.17 -0.06 16 11 C 0.00 -0.10 4.02 29.85 0.12 0.02 16 12 C -0.53 -29.49 9.66 25.60 0.25 -29.24 16 13 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 14 C 0.01 0.83 5.47 84.65 0.46 1.29 16 15 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 16 Si 0.94 44.08 27.47 68.60 1.88 45.96 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 20 O -0.23 -7.69 10.87 -3.70 -0.04 -7.73 16 21 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 34 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 35 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -67.86 306.91 2.84 -65.02 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 0.98 Total: 2.25 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.76 Total: -19.72 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -3.75 Total: -85.79 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.04 Total: -7.73 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -67.86 2.84 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256097489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.746 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds