Wall clock time and date at job start Sun Mar 29 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47041 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47041 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47041 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47058 * 179.97438 * 6 5 4 8 8 N 1.30271 * 126.28485 * 90.02420 * 7 6 5 9 9 N 1.28667 * 109.38447 * 179.97438 * 8 7 6 10 10 C 1.30269 * 109.37908 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.28137 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47064 * 90.02262 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 O 1.34365 * 126.28030 * 270.31194 * 7 6 5 21 21 H 1.08994 * 109.47424 * 299.99866 * 1 2 3 22 22 H 1.09004 * 109.47164 * 60.00003 * 1 2 3 23 23 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46981 * 240.00216 * 2 1 3 25 25 H 1.08995 * 109.46996 * 120.00058 * 2 1 3 26 26 H 1.08994 * 109.46902 * 59.99814 * 3 2 1 27 27 H 1.09004 * 109.47139 * 300.00012 * 3 2 1 28 28 H 1.09006 * 109.46981 * 60.00216 * 4 3 2 29 29 H 1.08995 * 109.46996 * 300.00058 * 4 3 2 30 30 H 1.08994 * 109.46902 * 59.99814 * 5 4 3 31 31 H 1.09004 * 109.47139 * 300.00012 * 5 4 3 32 32 H 1.09006 * 109.46981 * 60.00216 * 6 5 4 33 33 H 1.08995 * 109.46996 * 300.00058 * 6 5 4 34 34 H 1.09002 * 109.47152 * 330.02355 * 11 10 9 35 35 H 1.09001 * 109.46980 * 210.02455 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1123 4.3058 0.0000 8 7 6.3688 5.0338 1.0495 9 7 6.7798 6.1939 0.6744 10 6 6.7990 6.2457 -0.6271 11 6 7.2168 7.4255 -1.4666 12 6 8.6954 7.3448 -1.7460 13 1 9.2747 6.5213 -1.3552 14 6 9.3086 8.3217 -2.5015 15 7 8.6031 9.3242 -2.9778 16 14 11.1413 8.2213 -2.8484 17 1 11.4386 6.9632 -3.5793 18 1 11.5530 9.3839 -3.6755 19 1 11.8896 8.2372 -1.5657 20 8 6.3727 5.0561 -1.0838 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8892 29 1 3.9329 0.9288 0.8908 30 1 3.7162 3.3993 0.8895 31 1 3.7170 3.3983 -0.8905 32 1 5.9741 2.3705 -0.8881 33 1 5.9725 2.3718 0.8919 34 1 6.9982 8.3488 -0.9300 35 1 6.6679 7.4139 -2.4083 36 1 9.0346 10.0117 -3.5090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256312902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:57 Heat of formation + Delta-G solvation = -10.701919 kcal Electronic energy + Delta-G solvation = -15994.471133 eV Core-core repulsion = 13286.097284 eV Total energy + Delta-G solvation = -2708.373850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.39490 -36.90312 -35.33104 -34.37778 -33.51923 -31.38333 -29.61483 -27.39838 -24.92914 -23.80259 -22.12735 -21.31902 -21.22275 -20.98959 -17.00940 -16.36006 -16.11668 -16.02369 -14.94848 -14.82856 -14.53382 -14.12844 -13.40300 -13.17446 -12.87687 -12.76661 -12.37086 -11.84548 -11.70088 -11.65680 -11.60676 -11.21521 -11.16447 -10.99239 -10.93810 -10.89386 -10.78886 -10.67938 -10.30707 -10.00676 -9.80946 -8.62160 -8.56748 -6.25276 -4.31285 1.96062 3.04555 3.18412 3.25314 3.29014 3.34126 4.29349 4.38081 4.60912 4.66470 4.78784 4.89036 5.06912 5.10493 5.13765 5.19807 5.43647 5.44332 5.49904 5.56323 5.62105 5.71309 5.75380 5.84640 5.86569 6.03211 6.06036 6.17183 6.19259 6.29102 6.55342 7.11415 7.20302 7.67857 7.92143 8.68668 9.13059 9.33427 10.85013 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.003522 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.637911 B = 7947.889747 C = 7998.878188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.014 4.014 7 C 0.119 3.881 8 N -0.291 5.291 9 N -0.320 5.320 10 C 0.223 3.777 11 C 0.104 3.896 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.907 3.093 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.273 1.273 20 O -0.229 6.229 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 -16.183 3.003 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.053 4.053 7 C -0.093 4.093 8 N -0.139 5.139 9 N -0.166 5.166 10 C 0.014 3.986 11 C 0.066 3.934 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.734 3.266 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.198 1.198 20 O -0.109 6.109 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.724 -15.633 4.137 19.974 hybrid contribution 0.905 -0.275 -1.415 1.702 sum -10.819 -15.908 2.722 19.430 Atomic orbital electron populations 1.21786 0.96041 1.01446 1.01855 1.21539 0.95757 0.97021 1.01963 1.21627 0.95292 0.96686 1.02322 1.21584 0.95517 0.96031 1.02402 1.21629 0.93100 0.97590 1.03325 1.20002 0.96020 0.84331 1.04915 1.27606 1.02979 0.98060 0.80698 1.74199 1.14327 0.99071 1.26264 1.74388 1.19793 1.12256 1.10161 1.29503 0.91151 0.86368 0.91618 1.18177 0.97612 0.84502 0.93125 1.20784 0.91336 1.10083 1.34188 0.92170 1.24941 0.99131 0.94730 0.94960 1.69916 1.36435 1.11684 1.34581 0.86398 0.83911 0.77728 0.78570 1.19973 1.20869 1.19830 1.84811 1.63923 1.24208 1.37961 0.92766 0.92762 0.92925 0.92063 0.92065 0.91887 0.91898 0.91655 0.91587 0.91023 0.91351 0.89092 0.87920 0.91162 0.92893 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 4 C -0.12 -0.96 5.21 -26.73 -0.14 -1.10 16 5 C -0.12 -1.26 5.20 -26.73 -0.14 -1.40 16 6 C -0.01 -0.17 5.84 -27.88 -0.16 -0.34 16 7 C 0.12 2.22 7.73 -12.94 -0.10 2.12 16 8 N -0.29 -6.32 12.22 32.55 0.40 -5.92 16 9 N -0.32 -7.82 12.22 32.55 0.40 -7.42 16 10 C 0.22 5.37 7.67 -12.94 -0.10 5.27 16 11 C 0.10 2.68 5.60 -29.03 -0.16 2.52 16 12 C -0.53 -14.65 9.09 -34.44 -0.31 -14.96 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 16 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 O -0.23 -4.97 10.87 5.37 0.06 -4.91 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -30.44 310.51 -5.78 -36.22 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.88 Total: -5.36 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.14 Total: -8.93 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.53 Total: -37.83 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.06 Total: -4.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.44 -5.78 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256312902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.518 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds