Wall clock time and date at job start Sun Mar 29 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47041 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47041 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47041 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47058 * 179.97438 * 6 5 4 8 8 N 1.30271 * 126.28485 * 90.02420 * 7 6 5 9 9 N 1.28667 * 109.38447 * 179.97438 * 8 7 6 10 10 C 1.30269 * 109.37908 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.28137 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47064 * 90.02262 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 O 1.34365 * 126.28030 * 270.31194 * 7 6 5 21 21 H 1.08994 * 109.47424 * 299.99866 * 1 2 3 22 22 H 1.09004 * 109.47164 * 60.00003 * 1 2 3 23 23 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46981 * 240.00216 * 2 1 3 25 25 H 1.08995 * 109.46996 * 120.00058 * 2 1 3 26 26 H 1.08994 * 109.46902 * 59.99814 * 3 2 1 27 27 H 1.09004 * 109.47139 * 300.00012 * 3 2 1 28 28 H 1.09006 * 109.46981 * 60.00216 * 4 3 2 29 29 H 1.08995 * 109.46996 * 300.00058 * 4 3 2 30 30 H 1.08994 * 109.46902 * 59.99814 * 5 4 3 31 31 H 1.09004 * 109.47139 * 300.00012 * 5 4 3 32 32 H 1.09006 * 109.46981 * 60.00216 * 6 5 4 33 33 H 1.08995 * 109.46996 * 300.00058 * 6 5 4 34 34 H 1.09002 * 109.47152 * 330.02355 * 11 10 9 35 35 H 1.09001 * 109.46980 * 210.02455 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1123 4.3058 0.0000 8 7 6.3688 5.0338 1.0495 9 7 6.7798 6.1939 0.6744 10 6 6.7990 6.2457 -0.6271 11 6 7.2168 7.4255 -1.4666 12 6 8.6954 7.3448 -1.7460 13 1 9.2747 6.5213 -1.3552 14 6 9.3086 8.3217 -2.5015 15 7 8.6031 9.3242 -2.9778 16 14 11.1413 8.2213 -2.8484 17 1 11.4386 6.9632 -3.5793 18 1 11.5530 9.3839 -3.6755 19 1 11.8896 8.2372 -1.5657 20 8 6.3727 5.0561 -1.0838 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8892 29 1 3.9329 0.9288 0.8908 30 1 3.7162 3.3993 0.8895 31 1 3.7170 3.3983 -0.8905 32 1 5.9741 2.3705 -0.8881 33 1 5.9725 2.3718 0.8919 34 1 6.9982 8.3488 -0.9300 35 1 6.6679 7.4139 -2.4083 36 1 9.0346 10.0117 -3.5090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256312902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:57 Heat of formation + Delta-G solvation = -31.363101 kcal Electronic energy + Delta-G solvation = -15995.367069 eV Core-core repulsion = 13286.097284 eV Total energy + Delta-G solvation = -2709.269786 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.12753 -37.65353 -37.08188 -35.86492 -34.98109 -32.98117 -30.90847 -28.89255 -26.18851 -25.56456 -23.42103 -23.07282 -22.05704 -21.79762 -18.98676 -17.98406 -17.91170 -16.92368 -16.67758 -16.11190 -15.52072 -15.05625 -14.81673 -14.43924 -14.03308 -13.75441 -13.66823 -13.51173 -13.37841 -13.02892 -12.81274 -12.70000 -12.43922 -12.39083 -12.18738 -11.89875 -11.85636 -11.78360 -11.60855 -11.47077 -11.31094 -10.72167 -10.31707 -8.35286 -6.50221 0.28544 1.36503 1.42621 1.43285 1.46006 1.52875 2.35593 2.98404 3.01694 3.59487 3.78711 3.92189 4.07337 4.13746 4.30263 4.36133 4.37451 4.57682 4.63230 4.65146 4.80260 4.86860 4.90931 4.99257 5.01334 5.11228 5.11640 5.15011 5.22380 5.27534 5.39495 5.50617 5.53009 5.56133 5.82587 6.53819 7.18778 7.38636 8.75376 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.003522 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.637911 B = 7947.889747 C = 7998.878188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.015 4.015 7 C 0.147 3.853 8 N -0.321 5.321 9 N -0.339 5.339 10 C 0.205 3.795 11 C 0.113 3.887 12 C -0.549 4.549 13 H 0.052 0.948 14 C 0.020 3.980 15 N -0.917 5.917 16 Si 0.974 3.026 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.271 1.271 20 O -0.235 6.235 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 -18.191 2.796 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.053 4.053 7 C -0.065 4.065 8 N -0.166 5.166 9 N -0.185 5.185 10 C -0.006 4.006 11 C 0.075 3.925 12 C -0.587 4.587 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.196 1.196 20 O -0.115 6.115 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.380 -17.654 3.950 21.372 hybrid contribution 0.690 0.259 -1.316 1.509 sum -10.690 -17.394 2.634 20.586 Atomic orbital electron populations 1.21802 0.95953 1.01872 1.01685 1.21526 0.95869 0.96311 1.02408 1.21624 0.95192 0.97319 1.01878 1.21538 0.95512 0.94084 1.03596 1.21594 0.91635 0.99408 1.02455 1.20519 0.97046 0.80431 1.07331 1.28961 0.99178 0.99240 0.79132 1.74149 1.16439 0.98775 1.27223 1.74316 1.20036 1.13840 1.10306 1.28978 0.93067 0.87049 0.91477 1.17843 0.96945 0.84925 0.92779 1.21010 0.92385 1.10351 1.34957 0.93005 1.25814 1.03843 0.94082 0.94357 1.70004 1.38401 1.12216 1.34822 0.85367 0.78037 0.78350 0.78548 1.19029 1.19652 1.19601 1.84810 1.63991 1.23748 1.38950 0.92925 0.92995 0.92224 0.91644 0.91559 0.92355 0.92443 0.90486 0.90340 0.92035 0.92248 0.86565 0.85506 0.92847 0.93581 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.68 5.21 30.59 0.16 -1.52 16 4 C -0.11 -1.47 5.21 30.59 0.16 -1.31 16 5 C -0.11 -2.15 5.20 30.59 0.16 -1.99 16 6 C -0.02 -0.33 5.84 29.85 0.17 -0.15 16 7 C 0.15 5.32 7.73 88.34 0.68 6.01 16 8 N -0.32 -13.79 12.22 -165.50 -2.02 -15.81 16 9 N -0.34 -16.81 12.22 -165.50 -2.02 -18.83 16 10 C 0.20 10.07 7.67 88.34 0.68 10.75 16 11 C 0.11 6.04 5.60 29.10 0.16 6.21 16 12 C -0.55 -31.09 9.09 25.60 0.23 -30.86 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 14 C 0.02 1.10 5.46 84.66 0.46 1.56 16 15 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 16 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 O -0.23 -10.13 10.87 -3.71 -0.04 -10.17 16 21 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -65.46 310.51 3.03 -62.43 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.04 Total: 3.15 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.77 Total: -13.67 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -3.76 Total: -86.72 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.04 Total: -10.17 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -65.46 3.03 -62.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256312902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -65.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds