Wall clock time and date at job start Sun Mar 29 2020 22:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47019 * 2 1 4 4 C 1.52997 * 109.46929 * 240.00322 * 2 1 3 5 5 C 1.52995 * 109.47467 * 120.00094 * 2 1 3 6 6 C 1.50698 * 109.47256 * 60.00007 * 5 2 1 7 7 N 1.30276 * 126.28250 * 90.02168 * 6 5 2 8 8 N 1.28674 * 109.37873 * 179.97438 * 7 6 5 9 9 C 1.30272 * 109.38187 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.28028 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47333 * 90.02341 * 10 9 8 12 12 C 1.50701 * 109.47333 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99570 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99986 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99616 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47007 * 60.00529 * 16 14 12 18 18 H 1.48503 * 109.46795 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47463 * 299.99805 * 16 14 12 20 20 O 1.34364 * 107.43764 * 359.97438 * 9 8 7 21 21 H 1.09005 * 109.47405 * 299.99736 * 1 2 3 22 22 H 1.08998 * 109.47583 * 59.99438 * 1 2 3 23 23 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46514 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47266 * 300.00137 * 3 2 1 26 26 H 1.09002 * 109.46734 * 60.00656 * 3 2 1 27 27 H 1.08998 * 109.47106 * 299.99677 * 4 2 1 28 28 H 1.08997 * 109.47298 * 59.99898 * 4 2 1 29 29 H 1.09009 * 109.46941 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47602 * 300.00151 * 5 2 1 31 31 H 1.09002 * 109.47598 * 180.02562 * 5 2 1 32 32 H 1.08995 * 109.47102 * 210.02300 * 10 9 8 33 33 H 1.09003 * 109.47108 * 330.02056 * 10 9 8 34 34 H 1.09004 * 109.46778 * 299.99900 * 11 10 9 35 35 H 1.08998 * 109.46817 * 59.99962 * 11 10 9 36 36 H 0.97003 * 119.99684 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5378 -2.1420 1.2492 7 7 2.1384 -3.1721 0.7244 8 7 1.4228 -4.2249 0.9119 9 6 0.3411 -3.9022 1.5621 10 6 -0.7605 -4.8410 1.9820 11 6 -0.4537 -5.3972 3.3739 12 6 -1.5556 -6.3355 3.7941 13 1 -2.3910 -6.5173 3.1340 14 6 -1.4968 -6.9626 5.0205 15 7 -0.4788 -6.7423 5.8235 16 14 -2.8630 -8.1251 5.5415 17 1 -2.9576 -9.2445 4.5704 18 1 -2.5652 -8.6650 6.8925 19 1 -4.1525 -7.3895 5.5762 20 8 0.3883 -2.5790 1.7907 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6766 -1.7488 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7208 1.2494 32 1 -1.7075 -4.3020 2.0067 33 1 -0.8288 -5.6629 1.2692 34 1 0.4933 -5.9363 3.3491 35 1 -0.3855 -4.5753 4.0866 36 1 -0.4373 -7.1839 6.6863 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257862149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:37 Heat of formation + Delta-G solvation = 1.183459 kcal Electronic energy + Delta-G solvation = -16827.205657 eV Core-core repulsion = 14119.347196 eV Total energy + Delta-G solvation = -2707.858461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.76417 -37.93593 -35.66116 -34.35017 -32.25092 -30.40794 -27.58481 -27.47907 -27.35681 -25.40718 -22.65721 -22.28761 -20.76448 -19.17814 -17.05742 -16.70956 -16.23903 -15.20822 -14.80068 -14.71411 -14.50380 -13.92123 -13.52794 -13.08885 -12.81329 -12.40926 -12.32672 -12.08293 -11.87641 -11.70386 -11.48949 -11.40544 -11.15368 -11.05051 -10.97500 -10.92580 -10.76443 -10.52526 -10.10288 -9.92178 -9.32638 -8.81471 -8.45170 -6.09507 -4.14576 1.63397 2.71420 2.86193 3.29785 3.34432 3.36476 4.16331 4.39244 4.48520 4.53723 4.76172 4.93976 5.17949 5.22291 5.26796 5.39335 5.47595 5.51181 5.60120 5.69196 5.71866 5.81040 5.86092 5.93771 5.95857 6.04809 6.17130 6.21474 6.23105 6.24906 6.63480 7.48332 7.57031 7.85766 8.21463 8.79984 8.90448 9.50270 11.01758 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053776 B = 0.004409 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.556288 B = 6348.447447 C = 6413.995656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.012 4.012 6 C 0.143 3.857 7 N -0.287 5.287 8 N -0.305 5.305 9 C 0.195 3.805 10 C -0.025 4.025 11 C 0.028 3.972 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.225 6.225 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 15.308 -10.399 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.201 4.201 5 C -0.051 4.051 6 C -0.068 4.068 7 N -0.134 5.134 8 N -0.151 5.151 9 C -0.015 4.015 10 C -0.064 4.064 11 C -0.010 4.010 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.105 6.105 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.768 14.535 -10.842 18.521 hybrid contribution -1.499 -0.029 1.073 1.843 sum 2.270 14.506 -9.769 17.635 Atomic orbital electron populations 1.21938 0.94030 1.02197 1.02088 1.20585 0.96252 0.95560 0.94381 1.21837 1.01239 0.94263 1.02241 1.21919 1.01433 1.00643 0.96085 1.20262 1.01660 0.83248 0.99925 1.27600 0.83366 0.99514 0.96327 1.74284 1.25015 0.94909 1.19211 1.74398 1.02765 1.20490 1.17462 1.28887 0.98798 0.79555 0.94259 1.20705 0.90261 0.93076 1.02314 1.19155 0.98316 0.96252 0.87300 1.21040 1.06746 1.26505 1.02259 0.92112 1.25013 0.95984 0.96747 0.96460 1.69962 1.29973 1.43134 1.09914 0.86556 0.82033 0.81077 0.77764 1.20025 1.21209 1.20109 1.84813 1.38777 1.25085 1.61800 0.92137 0.92248 0.92770 0.92186 0.92091 0.92267 0.92220 0.92605 0.92073 0.88749 0.87533 0.89691 0.88126 0.95446 0.96074 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.22 37.16 0.31 -1.19 16 2 C -0.07 -0.64 0.80 -154.51 -0.12 -0.77 16 3 C -0.14 -0.98 8.47 37.16 0.31 -0.67 16 4 C -0.14 -1.50 8.20 37.16 0.30 -1.20 16 5 C -0.01 -0.14 4.91 -27.89 -0.14 -0.27 16 6 C 0.14 2.35 5.73 -12.94 -0.07 2.27 16 7 N -0.29 -5.47 11.46 32.55 0.37 -5.10 16 8 N -0.31 -6.47 12.22 32.55 0.40 -6.07 16 9 C 0.19 3.95 7.73 -12.94 -0.10 3.85 16 10 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 11 C 0.03 0.71 4.95 -27.88 -0.14 0.57 16 12 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 O -0.23 -4.17 10.25 5.37 0.06 -4.11 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.69 6.74 -51.93 -0.35 0.34 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.79 6.67 -51.93 -0.35 0.45 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -31.25 302.74 -4.85 -36.10 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.73 Total: -4.49 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.22 Total: -11.23 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 1.51 Total: -36.96 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: 0.06 Total: -4.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.25 -4.85 -36.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257862149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.280 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds