Wall clock time and date at job start Sun Mar 29 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47019 * 2 1 4 4 C 1.52997 * 109.46929 * 240.00322 * 2 1 3 5 5 C 1.52995 * 109.47467 * 120.00094 * 2 1 3 6 6 C 1.50698 * 109.47256 * 60.00007 * 5 2 1 7 7 N 1.30276 * 126.28250 * 90.02168 * 6 5 2 8 8 N 1.28674 * 109.37873 * 179.97438 * 7 6 5 9 9 C 1.30272 * 109.38187 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.28028 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47333 * 90.02341 * 10 9 8 12 12 C 1.50701 * 109.47333 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99570 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99986 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99616 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47007 * 60.00529 * 16 14 12 18 18 H 1.48503 * 109.46795 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47463 * 299.99805 * 16 14 12 20 20 O 1.34364 * 107.43764 * 359.97438 * 9 8 7 21 21 H 1.09005 * 109.47405 * 299.99736 * 1 2 3 22 22 H 1.08998 * 109.47583 * 59.99438 * 1 2 3 23 23 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46514 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47266 * 300.00137 * 3 2 1 26 26 H 1.09002 * 109.46734 * 60.00656 * 3 2 1 27 27 H 1.08998 * 109.47106 * 299.99677 * 4 2 1 28 28 H 1.08997 * 109.47298 * 59.99898 * 4 2 1 29 29 H 1.09009 * 109.46941 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47602 * 300.00151 * 5 2 1 31 31 H 1.09002 * 109.47598 * 180.02562 * 5 2 1 32 32 H 1.08995 * 109.47102 * 210.02300 * 10 9 8 33 33 H 1.09003 * 109.47108 * 330.02056 * 10 9 8 34 34 H 1.09004 * 109.46778 * 299.99900 * 11 10 9 35 35 H 1.08998 * 109.46817 * 59.99962 * 11 10 9 36 36 H 0.97003 * 119.99684 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5378 -2.1420 1.2492 7 7 2.1384 -3.1721 0.7244 8 7 1.4228 -4.2249 0.9119 9 6 0.3411 -3.9022 1.5621 10 6 -0.7605 -4.8410 1.9820 11 6 -0.4537 -5.3972 3.3739 12 6 -1.5556 -6.3355 3.7941 13 1 -2.3910 -6.5173 3.1340 14 6 -1.4968 -6.9626 5.0205 15 7 -0.4788 -6.7423 5.8235 16 14 -2.8630 -8.1251 5.5415 17 1 -2.9576 -9.2445 4.5704 18 1 -2.5652 -8.6650 6.8925 19 1 -4.1525 -7.3895 5.5762 20 8 0.3883 -2.5790 1.7907 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6766 -1.7488 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7208 1.2494 32 1 -1.7075 -4.3020 2.0067 33 1 -0.8288 -5.6629 1.2692 34 1 0.4933 -5.9363 3.3491 35 1 -0.3855 -4.5753 4.0866 36 1 -0.4373 -7.1839 6.6863 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257862149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:36 Heat of formation + Delta-G solvation = -21.101489 kcal Electronic energy + Delta-G solvation = -16828.172005 eV Core-core repulsion = 14119.347196 eV Total energy + Delta-G solvation = -2708.824809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.24286 -38.77619 -37.16491 -36.24526 -34.10299 -31.90045 -28.95103 -28.25297 -28.14537 -27.15009 -24.43307 -23.66151 -22.53416 -20.03182 -18.78452 -18.33318 -17.85280 -16.53016 -16.35649 -15.84326 -15.52916 -15.33645 -15.02761 -14.33824 -14.26942 -13.73097 -13.43087 -13.38911 -12.98331 -12.92654 -12.82205 -12.72000 -12.62962 -12.53346 -12.20662 -12.08979 -11.89775 -11.77577 -11.73839 -11.64371 -11.39871 -10.59683 -10.34724 -8.23563 -6.36877 0.18836 1.30714 1.36910 1.44107 1.47118 1.54957 2.40887 2.89593 3.11229 3.44426 3.67596 3.73944 3.96402 4.04915 4.34894 4.37728 4.46502 4.47472 4.57383 4.60536 4.75809 4.78121 4.84625 4.87664 4.89085 5.01605 5.05424 5.16860 5.28044 5.36230 5.38538 5.46720 5.48139 5.72732 6.08617 6.77987 7.30237 7.33624 8.88863 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053776 B = 0.004409 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.556288 B = 6348.447447 C = 6413.995656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.143 4.143 5 C -0.018 4.018 6 C 0.166 3.834 7 N -0.316 5.316 8 N -0.328 5.328 9 C 0.180 3.820 10 C -0.010 4.010 11 C 0.035 3.965 12 C -0.544 4.544 13 H 0.077 0.923 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.262 1.262 20 O -0.230 6.230 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.111 0.889 34 H -0.008 1.008 35 H -0.006 1.006 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 16.802 -10.960 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.190 4.190 4 C -0.200 4.200 5 C -0.057 4.057 6 C -0.045 4.045 7 N -0.161 5.161 8 N -0.174 5.174 9 C -0.031 4.031 10 C -0.049 4.049 11 C -0.003 4.003 12 C -0.581 4.581 13 H 0.095 0.905 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.186 1.186 20 O -0.110 6.110 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.934 16.040 -11.432 19.914 hybrid contribution -1.156 -0.384 1.206 1.715 sum 1.778 15.655 -10.226 18.783 Atomic orbital electron populations 1.21963 0.94558 1.00489 1.03305 1.20599 0.95766 0.97016 0.92830 1.21801 1.01915 0.91914 1.03328 1.21919 1.01821 0.98877 0.97384 1.20767 1.02794 0.80239 1.01854 1.28721 0.81719 1.00864 0.93193 1.74229 1.25623 0.95221 1.21064 1.74322 1.03235 1.21901 1.17939 1.28673 0.98811 0.80341 0.95293 1.20427 0.91307 0.93776 0.99351 1.18937 0.96492 0.94979 0.89875 1.21531 1.07405 1.26504 1.02704 0.90462 1.26038 0.98565 0.98596 0.96558 1.70117 1.32315 1.44592 1.10443 0.85378 0.78903 0.78802 0.77241 1.18938 1.21212 1.18641 1.84820 1.39749 1.24357 1.62043 0.91270 0.90778 0.95840 0.91135 0.91080 0.91171 0.95617 0.91112 0.91440 0.86634 0.85669 0.87495 0.87056 0.99005 0.98716 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.22 71.98 0.59 -2.14 16 2 C -0.06 -1.03 0.80 -52.18 -0.04 -1.08 16 3 C -0.13 -1.40 8.47 71.98 0.61 -0.79 16 4 C -0.14 -2.78 8.20 71.98 0.59 -2.19 16 5 C -0.02 -0.37 4.91 29.85 0.15 -0.22 16 6 C 0.17 5.39 5.73 88.34 0.51 5.89 16 7 N -0.32 -12.19 11.46 -165.50 -1.90 -14.09 16 8 N -0.33 -14.27 12.22 -165.50 -2.02 -16.30 16 9 C 0.18 7.45 7.73 88.34 0.68 8.13 16 10 C -0.01 -0.42 5.78 29.85 0.17 -0.25 16 11 C 0.04 1.87 4.95 29.85 0.15 2.01 16 12 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 13 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.94 -56.86 13.29 21.45 0.28 -56.58 16 16 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 20 O -0.23 -8.55 10.25 -3.71 -0.04 -8.58 16 21 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.02 0.57 6.74 -2.39 -0.02 0.56 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.02 0.67 6.67 -2.39 -0.02 0.65 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.11 4.31 8.14 -2.39 -0.02 4.30 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.14 302.74 3.50 -65.64 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.04 Total: 4.55 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.10 Total: -19.82 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -3.63 Total: -86.96 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.04 Total: -8.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.14 3.50 -65.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257862149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.541 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds