Wall clock time and date at job start Sun Mar 29 2020 22:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47104 * 119.99518 * 2 1 3 5 5 C 1.53004 * 109.47173 * 175.00097 * 4 2 1 6 6 C 1.50700 * 109.47190 * 179.97438 * 5 4 2 7 7 N 1.30271 * 126.28485 * 89.97509 * 6 5 4 8 8 N 1.28667 * 109.38447 * 179.97438 * 7 6 5 9 9 C 1.30269 * 109.37908 * 0.02562 * 8 7 6 10 10 C 1.50703 * 126.28137 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46912 * 90.02583 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00420 * 16 14 12 19 19 H 1.48498 * 109.46942 * 240.00334 * 16 14 12 20 20 O 1.34365 * 126.28030 * 270.26284 * 6 5 4 21 21 H 1.08997 * 109.47198 * 299.99956 * 1 2 3 22 22 H 1.08996 * 109.47285 * 60.00625 * 1 2 3 23 23 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47085 * 239.99502 * 2 1 3 25 25 H 1.09002 * 109.47362 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46935 * 299.99684 * 3 2 1 27 27 H 1.08996 * 109.47608 * 59.99822 * 3 2 1 28 28 H 1.08996 * 109.47241 * 55.00307 * 4 2 1 29 29 H 1.09006 * 109.47335 * 295.00054 * 4 2 1 30 30 H 1.08996 * 109.46866 * 59.99980 * 5 4 2 31 31 H 1.08993 * 109.47275 * 300.00159 * 5 4 2 32 32 H 1.09002 * 109.47152 * 330.02355 * 10 9 8 33 33 H 1.09001 * 109.46980 * 210.02455 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99742 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99914 * 11 10 9 36 36 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8309 1.1880 6 6 4.0673 -1.5407 2.4189 7 7 4.2376 -2.8253 2.5525 8 7 4.6794 -3.0768 3.7345 9 6 4.8054 -1.9612 4.3953 10 6 5.2921 -1.8153 5.8141 11 6 6.8114 -1.6352 5.8161 12 6 7.2980 -1.4886 7.2349 13 1 6.5940 -1.5211 8.0533 14 6 8.6420 -1.3140 7.4882 15 7 9.4993 -1.2749 6.4917 16 14 9.2450 -1.1316 9.2468 17 1 8.0899 -1.2096 10.1768 18 1 10.2041 -2.2221 9.5568 19 1 9.9204 0.1814 9.4048 20 8 4.4166 -0.9651 3.5817 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6055 -1.7197 1.2953 29 1 1.7517 -0.1581 2.1370 30 1 3.9994 0.1676 1.1421 31 1 3.8533 -1.3939 0.3004 32 1 5.0313 -2.7088 6.3814 33 1 4.8223 -0.9445 6.2716 34 1 7.2812 -2.5059 5.3587 35 1 7.0722 -0.7418 5.2489 36 1 10.4449 -1.1525 6.6699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258302336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:39 Heat of formation + Delta-G solvation = -4.388384 kcal Electronic energy + Delta-G solvation = -16275.650023 eV Core-core repulsion = 13567.549949 eV Total energy + Delta-G solvation = -2708.100074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.75384 -37.34577 -35.68183 -34.44460 -32.78709 -31.46816 -28.71382 -27.44259 -25.80793 -24.52057 -22.68055 -21.75309 -20.78656 -20.26570 -16.99706 -16.75971 -16.26367 -15.60086 -15.16747 -14.55038 -14.37503 -14.08314 -13.61591 -13.29153 -12.90158 -12.54559 -12.39930 -12.17336 -11.95439 -11.67111 -11.48300 -11.39809 -11.16429 -11.05543 -10.96952 -10.86749 -10.72335 -10.51936 -10.11763 -9.93822 -9.30271 -8.84729 -8.46446 -6.10257 -4.15143 1.60727 2.69202 2.83952 3.27198 3.34758 3.38436 4.12896 4.38690 4.56168 4.56874 4.67595 4.80875 5.04337 5.17005 5.26222 5.30316 5.36504 5.40312 5.46759 5.59139 5.67195 5.75890 5.83857 5.87995 5.91392 5.96713 6.10952 6.12555 6.20767 6.23860 6.62620 7.48118 7.56389 7.85414 8.20829 8.77266 8.90364 9.49818 11.01099 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.003860 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.221702 B = 7251.563767 C = 7423.352193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.113 4.113 5 C -0.019 4.019 6 C 0.137 3.863 7 N -0.289 5.289 8 N -0.305 5.305 9 C 0.197 3.803 10 C -0.025 4.025 11 C 0.027 3.973 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 O -0.226 6.226 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 4.709 -11.687 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.211 4.211 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.075 4.075 7 N -0.136 5.136 8 N -0.151 5.151 9 C -0.013 4.013 10 C -0.064 4.064 11 C -0.011 4.011 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 O -0.106 6.106 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.050 3.453 -11.997 19.553 hybrid contribution 0.533 1.309 1.152 1.824 sum -14.517 4.762 -10.844 18.736 Atomic orbital electron populations 1.21833 0.94959 1.01881 1.01827 1.21101 0.95970 0.96411 0.97870 1.21946 1.01402 0.95805 1.01932 1.21698 0.92926 1.01737 0.98811 1.20167 0.96285 1.00358 0.88992 1.27755 1.00956 0.89932 0.88841 1.74263 1.15081 1.12577 1.11673 1.74394 1.17521 1.24010 0.99171 1.28921 0.94476 0.80449 0.97457 1.20722 1.01084 1.04039 0.80526 1.19168 0.85369 0.98183 0.98383 1.21114 0.92753 1.50755 0.91756 0.91991 1.25025 0.96849 0.94985 0.97444 1.69979 1.02657 1.49401 1.30933 0.86441 0.78891 0.77726 0.84393 1.19551 1.20871 1.20930 1.84797 1.63202 1.40267 1.22326 0.92622 0.92589 0.92573 0.90724 0.92223 0.92639 0.92473 0.90895 0.91272 0.88604 0.87561 0.88057 0.89621 0.95419 0.96046 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.69 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -1.08 8.95 37.16 0.33 -0.74 16 4 C -0.11 -1.06 4.66 -26.73 -0.12 -1.18 16 5 C -0.02 -0.21 5.60 -27.88 -0.16 -0.37 16 6 C 0.14 2.27 7.73 -12.94 -0.10 2.17 16 7 N -0.29 -5.63 12.22 32.55 0.40 -5.23 16 8 N -0.31 -6.56 12.22 32.55 0.40 -6.16 16 9 C 0.20 4.03 7.73 -12.94 -0.10 3.93 16 10 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 11 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 12 C -0.53 -14.38 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 O -0.23 -4.25 10.87 5.37 0.06 -4.20 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.91 6.57 -51.93 -0.34 0.57 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -31.58 306.58 -5.31 -36.89 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.72 Total: -5.21 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.78 Total: -11.06 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 1.53 Total: -37.17 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.06 Total: -4.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.58 -5.31 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258302336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.502 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds