Wall clock time and date at job start Sun Mar 29 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47104 * 119.99518 * 2 1 3 5 5 C 1.53004 * 109.47173 * 175.00097 * 4 2 1 6 6 C 1.50700 * 109.47190 * 179.97438 * 5 4 2 7 7 N 1.30271 * 126.28485 * 89.97509 * 6 5 4 8 8 N 1.28667 * 109.38447 * 179.97438 * 7 6 5 9 9 C 1.30269 * 109.37908 * 0.02562 * 8 7 6 10 10 C 1.50703 * 126.28137 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46912 * 90.02583 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00420 * 16 14 12 19 19 H 1.48498 * 109.46942 * 240.00334 * 16 14 12 20 20 O 1.34365 * 126.28030 * 270.26284 * 6 5 4 21 21 H 1.08997 * 109.47198 * 299.99956 * 1 2 3 22 22 H 1.08996 * 109.47285 * 60.00625 * 1 2 3 23 23 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47085 * 239.99502 * 2 1 3 25 25 H 1.09002 * 109.47362 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46935 * 299.99684 * 3 2 1 27 27 H 1.08996 * 109.47608 * 59.99822 * 3 2 1 28 28 H 1.08996 * 109.47241 * 55.00307 * 4 2 1 29 29 H 1.09006 * 109.47335 * 295.00054 * 4 2 1 30 30 H 1.08996 * 109.46866 * 59.99980 * 5 4 2 31 31 H 1.08993 * 109.47275 * 300.00159 * 5 4 2 32 32 H 1.09002 * 109.47152 * 330.02355 * 10 9 8 33 33 H 1.09001 * 109.46980 * 210.02455 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99742 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99914 * 11 10 9 36 36 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8309 1.1880 6 6 4.0673 -1.5407 2.4189 7 7 4.2376 -2.8253 2.5525 8 7 4.6794 -3.0768 3.7345 9 6 4.8054 -1.9612 4.3953 10 6 5.2921 -1.8153 5.8141 11 6 6.8114 -1.6352 5.8161 12 6 7.2980 -1.4886 7.2349 13 1 6.5940 -1.5211 8.0533 14 6 8.6420 -1.3140 7.4882 15 7 9.4993 -1.2749 6.4917 16 14 9.2450 -1.1316 9.2468 17 1 8.0899 -1.2096 10.1768 18 1 10.2041 -2.2221 9.5568 19 1 9.9204 0.1814 9.4048 20 8 4.4166 -0.9651 3.5817 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6055 -1.7197 1.2953 29 1 1.7517 -0.1581 2.1370 30 1 3.9994 0.1676 1.1421 31 1 3.8533 -1.3939 0.3004 32 1 5.0313 -2.7088 6.3814 33 1 4.8223 -0.9445 6.2716 34 1 7.2812 -2.5059 5.3587 35 1 7.0722 -0.7418 5.2489 36 1 10.4449 -1.1525 6.6699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258302336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:38 Heat of formation + Delta-G solvation = -26.564873 kcal Electronic energy + Delta-G solvation = -16276.611667 eV Core-core repulsion = 13567.549949 eV Total energy + Delta-G solvation = -2709.061719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.25565 -38.06294 -37.20471 -36.28635 -34.35132 -32.94386 -30.18316 -27.98271 -27.58548 -25.64244 -24.47875 -23.01124 -22.55570 -20.89778 -18.80510 -18.28341 -17.95767 -16.52828 -16.41592 -16.23472 -15.67960 -15.07684 -14.84871 -14.55279 -14.30931 -13.76465 -13.52426 -13.44910 -13.11641 -12.97867 -12.90164 -12.76256 -12.58118 -12.37211 -12.20461 -11.97218 -11.89569 -11.70469 -11.52453 -11.46927 -11.35300 -10.61530 -10.39675 -8.23851 -6.36806 0.14570 1.27321 1.32662 1.43803 1.44540 1.57954 2.40681 2.86211 3.11173 3.41926 3.78069 3.86159 3.97745 4.06331 4.29191 4.33111 4.44828 4.47135 4.52017 4.56428 4.70322 4.83361 4.85383 4.89180 4.94266 5.05102 5.10598 5.14307 5.33547 5.36906 5.46930 5.48782 5.53478 5.73213 6.08633 6.78650 7.25846 7.33689 8.89010 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.003860 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.221702 B = 7251.563767 C = 7423.352193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.107 4.107 5 C -0.020 4.020 6 C 0.159 3.841 7 N -0.320 5.320 8 N -0.328 5.328 9 C 0.183 3.817 10 C -0.011 4.011 11 C 0.034 3.966 12 C -0.541 4.541 13 H 0.078 0.922 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.279 1.279 20 O -0.231 6.231 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.109 0.891 34 H -0.008 1.008 35 H -0.005 1.005 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 5.628 -11.561 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.052 4.052 7 N -0.166 5.166 8 N -0.174 5.174 9 C -0.028 4.028 10 C -0.049 4.049 11 C -0.004 4.004 12 C -0.578 4.578 13 H 0.096 0.904 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.178 1.178 18 H -0.207 1.207 19 H -0.205 1.205 20 O -0.111 6.111 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.217 4.361 -11.881 20.571 hybrid contribution 0.840 1.047 0.977 1.660 sum -15.377 5.407 -10.904 19.611 Atomic orbital electron populations 1.21838 0.94510 1.01969 1.02228 1.21075 0.96290 0.96445 0.96974 1.21965 1.01489 0.95518 1.02255 1.21669 0.91446 1.01619 0.99841 1.20617 0.97364 1.01031 0.86852 1.28928 0.97769 0.89464 0.89071 1.74212 1.17031 1.14153 1.11193 1.74322 1.17938 1.24935 1.00174 1.28744 0.95651 0.80735 0.97676 1.20463 0.97491 1.05686 0.81275 1.18950 0.88894 0.95284 0.97254 1.21587 0.93380 1.50070 0.92789 0.90403 1.26050 0.97189 0.94526 1.02163 1.70124 1.03092 1.50683 1.33609 0.85269 0.78594 0.77602 0.78794 1.17785 1.20729 1.20465 1.84808 1.63333 1.40045 1.22956 0.92932 0.91522 0.92674 0.89683 0.92093 0.91635 0.92917 0.91606 0.91867 0.86676 0.85608 0.86872 0.87295 0.98963 0.98676 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.10 2.92 -10.79 -0.03 -1.13 16 3 C -0.16 -1.80 8.95 71.98 0.64 -1.15 16 4 C -0.11 -1.81 4.66 30.59 0.14 -1.66 16 5 C -0.02 -0.41 5.60 29.85 0.17 -0.24 16 6 C 0.16 5.15 7.73 88.34 0.68 5.83 16 7 N -0.32 -12.45 12.22 -165.50 -2.02 -14.47 16 8 N -0.33 -14.26 12.22 -165.50 -2.02 -16.28 16 9 C 0.18 7.53 7.73 88.34 0.68 8.22 16 10 C -0.01 -0.44 5.78 29.85 0.17 -0.26 16 11 C 0.03 1.80 4.96 29.85 0.15 1.95 16 12 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 13 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 14 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 15 N -0.94 -56.70 13.29 21.45 0.28 -56.41 16 16 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 17 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 O -0.23 -8.59 10.87 -3.71 -0.04 -8.64 16 21 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.12 1.90 6.57 -2.39 -0.02 1.88 16 31 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 33 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.65 306.58 3.23 -65.41 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.04 Total: 3.72 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.97 Total: -18.43 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.76 Total: -87.16 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.04 Total: -8.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.65 3.23 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258302336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.847 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds