Wall clock time and date at job start Sun Mar 29 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47123 * 240.00166 * 2 1 3 5 5 C 1.50701 * 109.47358 * 120.00054 * 2 1 3 6 6 N 1.30274 * 126.28238 * 60.02404 * 5 2 1 7 7 N 1.28669 * 109.37957 * 179.97438 * 6 5 2 8 8 C 1.30274 * 109.38134 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.27888 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47009 * 89.97830 * 9 8 7 11 11 C 1.53000 * 109.47361 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47067 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00658 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99391 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00723 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99569 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47147 * 59.99999 * 16 14 12 18 18 H 1.48502 * 109.46927 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47008 * 299.99624 * 16 14 12 20 20 O 1.34355 * 107.43791 * 0.02562 * 8 7 6 21 21 H 1.08997 * 109.46946 * 299.99831 * 1 2 3 22 22 H 1.09001 * 109.47133 * 60.00168 * 1 2 3 23 23 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47266 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46959 * 299.99939 * 3 2 1 26 26 H 1.08997 * 109.47051 * 60.00234 * 3 2 1 27 27 H 1.08998 * 109.47198 * 299.99716 * 4 2 1 28 28 H 1.09001 * 109.47389 * 59.99822 * 4 2 1 29 29 H 1.08999 * 109.47119 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46777 * 209.97327 * 9 8 7 31 31 H 1.09001 * 109.47251 * 329.97979 * 9 8 7 32 32 H 1.09002 * 109.47268 * 300.00093 * 10 9 8 33 33 H 1.09006 * 109.47427 * 59.99830 * 10 9 8 34 34 H 1.09005 * 109.46727 * 300.00219 * 11 10 9 35 35 H 1.09001 * 109.46866 * 60.00170 * 11 10 9 36 36 H 0.96991 * 120.00506 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7947 -1.9491 1.5565 7 7 2.3818 -2.2178 2.6695 8 6 3.0144 -1.1598 3.0910 9 6 3.8279 -1.0519 4.3550 10 6 5.2804 -1.4321 4.0606 11 6 6.1066 -1.3218 5.3436 12 6 7.5373 -1.6957 5.0535 13 1 7.8283 -1.9836 4.0541 14 6 8.4747 -1.6713 6.0643 15 7 8.1204 -1.3212 7.2815 16 14 10.2481 -2.1354 5.7048 17 1 10.8024 -1.2157 4.6792 18 1 11.0500 -2.0283 6.9502 19 1 10.3019 -3.5307 5.1994 20 8 2.8084 -0.1828 2.1921 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1393 29 1 3.1300 -0.7208 -1.2495 30 1 3.7885 -0.0277 4.7260 31 1 3.4211 -1.7270 5.1078 32 1 5.3199 -2.4562 3.6895 33 1 5.6874 -0.7569 3.3077 34 1 6.0670 -0.2975 5.7143 35 1 5.6998 -1.9968 6.0967 36 1 8.7799 -1.3036 7.9925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261575030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:00 Heat of formation + Delta-G solvation = 0.585725 kcal Electronic energy + Delta-G solvation = -16574.706758 eV Core-core repulsion = 13866.822377 eV Total energy + Delta-G solvation = -2707.884381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.03903 -37.39074 -35.94877 -35.00144 -32.59855 -30.28083 -27.82478 -27.63474 -27.32500 -24.27521 -23.68441 -21.89722 -20.36018 -20.16376 -17.09896 -16.94233 -16.29555 -15.63967 -14.74296 -14.40172 -14.36395 -14.22937 -13.90707 -12.72566 -12.61333 -12.47734 -12.23511 -12.18111 -12.06703 -12.00540 -11.71921 -11.50353 -11.41716 -11.31933 -10.89615 -10.87444 -10.70391 -10.56515 -9.83565 -9.64198 -9.27602 -9.02206 -8.38332 -6.03613 -4.06333 1.36000 2.39555 2.58866 3.32459 3.36700 3.39515 3.82426 4.33812 4.44187 4.51365 4.60185 4.79120 5.18155 5.28255 5.32472 5.35892 5.42741 5.44073 5.52137 5.53412 5.58511 5.66632 5.69986 5.75745 5.86808 5.93401 5.99583 6.11381 6.49841 6.63940 6.94575 7.59580 7.71613 7.94605 8.36322 8.52576 8.99541 9.58023 11.07679 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.004176 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.404189 B = 6702.772875 C = 6899.232483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 C -0.148 4.148 4 C -0.141 4.141 5 C 0.153 3.847 6 N -0.286 5.286 7 N -0.298 5.298 8 C 0.185 3.815 9 C -0.029 4.029 10 C -0.106 4.106 11 C 0.023 3.977 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.222 6.222 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 5.616 -14.095 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 C -0.206 4.206 4 C -0.199 4.199 5 C -0.059 4.059 6 N -0.132 5.132 7 N -0.144 5.144 8 C -0.026 4.026 9 C -0.068 4.068 10 C -0.145 4.145 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.101 6.101 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.352 4.418 -13.948 20.495 hybrid contribution 1.510 0.887 0.018 1.752 sum -12.842 5.306 -13.930 19.675 Atomic orbital electron populations 1.21914 0.91516 1.03557 1.02745 1.19143 0.96461 0.94709 0.86409 1.21941 1.02227 0.93365 1.03051 1.21925 1.01807 1.01220 0.94913 1.27820 0.93653 0.91065 0.93344 1.74261 1.19273 1.12007 1.07679 1.74420 1.10794 1.23661 1.05524 1.28605 0.97689 0.81715 0.94541 1.20606 0.94911 1.04839 0.86405 1.21741 0.89814 1.00892 1.02057 1.19102 0.93891 0.97612 0.90783 1.21161 0.93702 1.45867 0.95418 0.92691 1.25004 0.98987 0.95255 0.95061 1.69940 1.34506 1.48152 1.00807 0.86639 0.84601 0.79128 0.77548 1.20243 1.21224 1.20173 1.84794 1.54407 1.41978 1.28939 0.92144 0.90732 0.91073 0.91563 0.90846 0.91723 0.91057 0.90727 0.91983 0.88835 0.87321 0.92271 0.92840 0.96188 0.96013 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.46 37.16 0.31 -0.84 16 2 C 0.03 0.35 0.99 -155.66 -0.15 0.19 16 3 C -0.15 -1.27 8.06 37.16 0.30 -0.97 16 4 C -0.14 -1.24 8.46 37.16 0.31 -0.92 16 5 C 0.15 2.24 6.57 -12.94 -0.09 2.15 16 6 N -0.29 -4.91 12.22 32.55 0.40 -4.51 16 7 N -0.30 -5.58 12.22 32.55 0.40 -5.18 16 8 C 0.18 3.21 7.73 -12.94 -0.10 3.11 16 9 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16 10 C -0.11 -2.17 5.13 -26.73 -0.14 -2.30 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 O -0.22 -3.58 10.32 5.39 0.06 -3.53 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -31.65 307.88 -4.94 -36.59 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -5.88 Total: -5.52 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.26 Total: -13.23 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 1.53 Total: -35.51 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.06 Total: -3.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.65 -4.94 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261575030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.175 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds