Wall clock time and date at job start Sun Mar 29 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47123 * 240.00166 * 2 1 3 5 5 C 1.50701 * 109.47358 * 120.00054 * 2 1 3 6 6 N 1.30274 * 126.28238 * 60.02404 * 5 2 1 7 7 N 1.28669 * 109.37957 * 179.97438 * 6 5 2 8 8 C 1.30274 * 109.38134 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.27888 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47009 * 89.97830 * 9 8 7 11 11 C 1.53000 * 109.47361 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47067 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00658 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99391 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00723 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99569 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47147 * 59.99999 * 16 14 12 18 18 H 1.48502 * 109.46927 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47008 * 299.99624 * 16 14 12 20 20 O 1.34355 * 107.43791 * 0.02562 * 8 7 6 21 21 H 1.08997 * 109.46946 * 299.99831 * 1 2 3 22 22 H 1.09001 * 109.47133 * 60.00168 * 1 2 3 23 23 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47266 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46959 * 299.99939 * 3 2 1 26 26 H 1.08997 * 109.47051 * 60.00234 * 3 2 1 27 27 H 1.08998 * 109.47198 * 299.99716 * 4 2 1 28 28 H 1.09001 * 109.47389 * 59.99822 * 4 2 1 29 29 H 1.08999 * 109.47119 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46777 * 209.97327 * 9 8 7 31 31 H 1.09001 * 109.47251 * 329.97979 * 9 8 7 32 32 H 1.09002 * 109.47268 * 300.00093 * 10 9 8 33 33 H 1.09006 * 109.47427 * 59.99830 * 10 9 8 34 34 H 1.09005 * 109.46727 * 300.00219 * 11 10 9 35 35 H 1.09001 * 109.46866 * 60.00170 * 11 10 9 36 36 H 0.96991 * 120.00506 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7947 -1.9491 1.5565 7 7 2.3818 -2.2178 2.6695 8 6 3.0144 -1.1598 3.0910 9 6 3.8279 -1.0519 4.3550 10 6 5.2804 -1.4321 4.0606 11 6 6.1066 -1.3218 5.3436 12 6 7.5373 -1.6957 5.0535 13 1 7.8283 -1.9836 4.0541 14 6 8.4747 -1.6713 6.0643 15 7 8.1204 -1.3212 7.2815 16 14 10.2481 -2.1354 5.7048 17 1 10.8024 -1.2157 4.6792 18 1 11.0500 -2.0283 6.9502 19 1 10.3019 -3.5307 5.1994 20 8 2.8084 -0.1828 2.1921 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1393 29 1 3.1300 -0.7208 -1.2495 30 1 3.7885 -0.0277 4.7260 31 1 3.4211 -1.7270 5.1078 32 1 5.3199 -2.4562 3.6895 33 1 5.6874 -0.7569 3.3077 34 1 6.0670 -0.2975 5.7143 35 1 5.6998 -1.9968 6.0967 36 1 8.7799 -1.3036 7.9925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261575030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:00 Heat of formation + Delta-G solvation = -21.751465 kcal Electronic energy + Delta-G solvation = -16575.675371 eV Core-core repulsion = 13866.822377 eV Total energy + Delta-G solvation = -2708.852994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.31992 -38.21717 -37.25114 -36.70049 -34.55138 -31.85040 -29.22432 -28.29920 -28.28857 -26.01939 -24.93437 -23.42197 -22.08568 -21.10999 -18.59771 -18.38539 -17.95454 -16.65664 -16.58708 -15.85442 -15.73103 -15.10993 -14.86677 -14.36327 -13.99495 -13.57228 -13.45179 -13.23450 -13.20830 -13.04945 -12.85089 -12.73939 -12.69270 -12.62558 -12.50330 -12.16042 -12.13112 -11.83276 -11.62643 -11.50002 -11.30327 -10.54908 -10.46640 -8.20664 -6.31169 0.10747 1.20463 1.28282 1.40722 1.42938 1.50992 2.40943 2.71939 3.13058 3.31147 3.63849 3.79392 3.92426 4.07608 4.15090 4.21931 4.28167 4.47273 4.67517 4.67966 4.69760 4.76827 4.87637 4.87867 4.89172 4.94283 4.96795 5.11510 5.17610 5.26993 5.31279 5.48475 5.69278 5.82674 6.22935 6.83963 7.22929 7.37718 8.90707 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.004176 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.404189 B = 6702.772875 C = 6899.232483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.139 4.139 5 C 0.168 3.832 6 N -0.316 5.316 7 N -0.322 5.322 8 C 0.177 3.823 9 C -0.018 4.018 10 C -0.091 4.091 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.055 0.945 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.270 1.270 20 O -0.226 6.226 21 H 0.056 0.944 22 H 0.109 0.891 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.007 0.993 35 H 0.003 0.997 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 6.546 -15.900 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.044 4.044 6 N -0.160 5.160 7 N -0.168 5.168 8 C -0.034 4.034 9 C -0.057 4.057 10 C -0.129 4.129 11 C -0.011 4.011 12 C -0.586 4.586 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.195 1.195 20 O -0.105 6.105 21 H 0.075 0.925 22 H 0.127 0.873 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.609 5.337 -15.769 22.148 hybrid contribution 1.524 0.626 0.521 1.728 sum -13.085 5.963 -15.248 20.959 Atomic orbital electron populations 1.21936 0.89819 1.03328 1.04283 1.19617 0.97692 0.95319 0.84619 1.21965 1.01529 0.92319 1.04508 1.21955 1.01164 1.00952 0.95563 1.28972 0.91423 0.90546 0.93428 1.74212 1.20595 1.13495 1.07742 1.74355 1.11462 1.24564 1.06443 1.28472 0.98168 0.81885 0.94861 1.20419 0.92520 1.06132 0.86594 1.21434 0.91558 1.00427 0.99514 1.18984 0.93581 0.96083 0.92405 1.21620 0.95405 1.45973 0.95617 0.92626 1.25892 1.03595 0.95073 0.94823 1.70055 1.36068 1.49045 1.01725 0.85561 0.79103 0.79077 0.77692 1.19236 1.20612 1.19494 1.84809 1.54761 1.41791 1.29140 0.92528 0.87280 0.92203 0.92689 0.87546 0.92157 0.92198 0.87185 0.93039 0.86960 0.86591 0.93222 0.92790 0.97505 0.97831 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.46 71.98 0.61 -1.29 16 2 C 0.03 0.53 0.99 -52.93 -0.05 0.48 16 3 C -0.15 -2.10 8.06 71.98 0.58 -1.52 16 4 C -0.14 -2.13 8.46 71.98 0.61 -1.52 16 5 C 0.17 4.79 6.57 88.34 0.58 5.37 16 6 N -0.32 -10.81 12.22 -165.49 -2.02 -12.83 16 7 N -0.32 -12.15 12.22 -165.51 -2.02 -14.17 16 8 C 0.18 6.13 7.73 88.34 0.68 6.82 16 9 C -0.02 -0.61 5.84 29.85 0.17 -0.44 16 10 C -0.09 -3.72 5.13 30.59 0.16 -3.56 16 11 C 0.03 1.36 4.97 29.85 0.15 1.51 16 12 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 13 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 14 C 0.00 0.25 5.46 84.65 0.46 0.72 16 15 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 O -0.23 -7.14 10.32 -3.63 -0.04 -7.18 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.26 14.92 8.31 -92.72 -0.77 14.15 16 Total: -1.00 -68.44 307.88 3.45 -64.99 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.04 Total: 2.67 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.18 Total: -24.27 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.76 Total: -82.35 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.04 Total: -7.18 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.44 3.45 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261575030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.242 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds