Wall clock time and date at job start Sun Mar 29 2020 22:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 112.85053 * 2 1 4 4 C 1.53773 * 113.61817 * 228.80370 * 2 1 3 5 5 C 1.53784 * 87.08410 * 270.88598 * 4 2 1 6 6 H 1.08993 * 113.61651 * 89.18989 * 5 4 2 7 7 N 1.46893 * 113.61429 * 220.02194 * 5 4 2 8 8 C 1.46905 * 110.99997 * 204.99354 * 7 5 4 9 9 C 1.53002 * 109.47366 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47078 * 55.00164 * 9 8 7 11 11 C 1.47199 * 109.46895 * 294.99799 * 9 8 7 12 12 N 6.79047 * 120.11075 * 199.25070 * 2 1 3 13 13 C 1.52998 * 109.46763 * 175.00267 * 9 8 7 14 14 C 1.50710 * 109.46835 * 184.99882 * 13 9 8 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 9 16 16 C 1.37871 * 119.99889 * 179.97438 * 14 13 9 17 17 N 1.31521 * 119.99864 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00249 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47272 * 90.00066 * 18 16 14 20 20 H 1.48500 * 109.47433 * 209.99702 * 18 16 14 21 21 H 1.48499 * 109.47071 * 329.99842 * 18 16 14 22 22 C 1.53781 * 113.61623 * 131.30231 * 2 1 3 23 23 H 1.09002 * 109.47153 * 191.19594 * 1 2 3 24 24 H 1.09001 * 109.46832 * 71.19785 * 1 2 3 25 25 H 1.09004 * 109.47261 * 311.19767 * 1 2 3 26 26 H 0.96699 * 113.99621 * 50.32935 * 3 2 1 27 27 H 1.09003 * 113.61658 * 25.43333 * 4 2 1 28 28 H 1.09000 * 113.61693 * 156.25081 * 4 2 1 29 29 H 1.00900 * 111.00649 * 81.04191 * 7 5 4 30 30 H 1.08998 * 109.47108 * 300.00118 * 8 7 5 31 31 H 1.09006 * 109.46677 * 60.00015 * 8 7 5 32 32 H 1.09001 * 109.47659 * 304.99464 * 13 9 8 33 33 H 1.09001 * 109.47696 * 65.00430 * 13 9 8 34 34 H 0.97004 * 119.99859 * 179.97438 * 17 16 14 35 35 H 1.09002 * 113.61952 * 203.66464 * 22 2 1 36 36 H 1.09002 * 113.61550 * 334.57258 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 2.0929 -2.0426 -0.0019 6 1 1.1574 -2.6018 -0.0034 7 7 3.2772 -2.9116 -0.0027 8 6 2.9590 -4.2356 0.5484 9 6 4.2140 -5.1106 0.5306 10 1 5.0193 -4.6016 1.0602 11 6 4.6211 -5.3563 -0.8625 12 7 4.9366 -5.5457 -1.9367 13 6 3.9153 -6.4447 1.2174 14 6 5.1814 -7.2569 1.3094 15 1 6.1066 -6.8609 0.9176 16 6 5.1588 -8.5050 1.8947 17 7 6.2639 -9.2136 1.9755 18 14 3.5586 -9.1897 2.5730 19 1 2.8547 -9.9495 1.5088 20 1 3.8512 -10.0930 3.7149 21 1 2.6979 -8.0712 3.0346 22 6 2.1460 -0.9300 1.0585 23 1 -0.3633 -1.0081 0.1995 24 1 -0.3633 0.3312 -0.9729 25 1 -0.3634 0.6769 0.7733 26 1 1.7179 1.8983 0.6800 27 1 1.4946 -1.1068 -1.9156 28 1 3.1586 -0.6476 -1.3505 29 1 4.0399 -2.4841 0.5010 30 1 2.6058 -4.1271 1.5738 31 1 2.1818 -4.7034 -0.0560 32 1 3.5292 -6.2591 2.2197 33 1 3.1730 -6.9936 0.6379 34 1 6.2480 -10.0916 2.3876 35 1 3.1591 -0.6511 1.3484 36 1 1.4945 -1.1104 1.9136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262572061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:35 Heat of formation + Delta-G solvation = -15.037467 kcal Electronic energy + Delta-G solvation = -16483.379613 eV Core-core repulsion = 13774.817760 eV Total energy + Delta-G solvation = -2708.561853 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10681 -37.20236 -35.62097 -34.13335 -32.99393 -31.30770 -28.88472 -26.71770 -25.94877 -23.15224 -22.31749 -21.40585 -19.27574 -17.13677 -17.00282 -16.83878 -15.60434 -15.54975 -14.69813 -14.41294 -13.94641 -13.79303 -13.54397 -13.03749 -12.93194 -12.54894 -12.37012 -12.12408 -12.07620 -11.84629 -11.65283 -11.35209 -11.19051 -11.09790 -10.82944 -10.74362 -10.31043 -10.04510 -9.95110 -9.71039 -9.33493 -8.62586 -8.32857 -6.11344 -4.12106 3.25871 3.32910 3.33849 3.70032 3.79084 3.84249 4.22158 4.32729 4.37237 4.43001 4.55564 4.69530 4.82518 5.09381 5.20288 5.23546 5.36533 5.43112 5.52218 5.59343 5.64594 5.67017 5.85649 5.90180 6.00735 6.03914 6.24188 6.28736 6.92817 7.04109 7.10058 7.39536 7.43629 7.62785 8.39992 8.55664 8.92435 9.48372 11.01801 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038222 B = 0.004606 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.390336 B = 6077.474967 C = 6450.734092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 O -0.553 6.553 4 C -0.112 4.112 5 C 0.073 3.927 6 H 0.099 0.901 7 N -0.679 5.679 8 C 0.063 3.937 9 C 0.019 3.981 10 H 0.105 0.895 11 C 0.251 3.749 12 N -0.470 5.470 13 C -0.005 4.005 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.263 1.263 22 C -0.191 4.191 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.373 0.627 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.346 0.654 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.092 0.908 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 18.192 1.464 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 O -0.358 6.358 4 C -0.150 4.150 5 C -0.038 4.038 6 H 0.117 0.883 7 N -0.309 5.309 8 C -0.067 4.067 9 C -0.003 4.003 10 H 0.122 0.878 11 C -0.066 4.066 12 N -0.147 5.147 13 C -0.044 4.044 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.231 4.231 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.220 0.780 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.165 0.835 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.407 17.265 -1.252 21.297 hybrid contribution -1.218 -0.066 2.271 2.578 sum -13.625 17.199 1.019 21.965 Atomic orbital electron populations 1.22156 0.93961 1.03000 1.02676 1.22544 0.92207 0.81828 0.97740 1.86588 1.66749 1.23200 1.59267 1.23209 1.02321 0.92940 0.96518 1.22757 0.94448 0.91365 0.95268 0.88279 1.60391 1.07485 1.03362 1.59702 1.22146 0.97473 0.88478 0.98559 1.18961 0.97174 0.99178 0.84993 0.87760 1.28679 0.92392 0.91262 0.94251 1.80978 1.09578 1.10588 1.13510 1.19639 0.98608 0.90456 0.95682 1.21036 0.94623 1.01334 1.39616 0.90764 1.24994 0.96176 0.96640 0.95306 1.69911 1.27092 1.12157 1.44338 0.86810 0.84252 0.79406 0.79010 1.20230 1.21265 1.18798 1.24435 1.02417 0.98117 0.98090 0.91039 0.91502 0.92090 0.78029 0.90884 0.88765 0.83451 0.93214 0.90472 0.94541 0.96079 0.92559 0.88965 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.33 37.16 0.35 -0.76 16 2 C 0.10 0.87 1.93 -89.81 -0.17 0.69 16 3 O -0.55 -5.28 13.49 -35.23 -0.48 -5.76 16 4 C -0.11 -1.17 7.30 -25.92 -0.19 -1.36 16 5 C 0.07 0.74 3.83 -66.90 -0.26 0.48 16 6 H 0.10 0.95 7.38 -51.93 -0.38 0.56 16 7 N -0.68 -8.35 6.32 -105.86 -0.67 -9.02 16 8 C 0.06 0.85 4.89 -3.82 -0.02 0.83 16 9 C 0.02 0.33 2.35 -93.41 -0.22 0.11 16 10 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 11 C 0.25 5.22 13.67 -20.78 -0.28 4.94 16 12 N -0.47 -10.81 18.53 42.13 0.78 -10.03 16 13 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 14 C -0.53 -14.21 9.15 -34.44 -0.32 -14.52 16 15 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 18 Si 0.88 20.55 27.47 -169.99 -4.67 15.89 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 22 C -0.19 -1.68 7.09 -25.91 -0.18 -1.87 16 23 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.37 2.03 9.06 45.56 0.41 2.44 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.35 3.94 8.19 -39.29 -0.32 3.62 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.04 0.73 7.20 -51.93 -0.37 0.35 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 0.86 7.82 -51.93 -0.41 0.45 16 36 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -32.45 304.79 -5.96 -38.40 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.80 Total: 1.98 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.49 Total: -9.76 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.89 Total: -45.35 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.48 Total: -5.76 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.45 -5.96 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.367 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds