Wall clock time and date at job start Sun Mar 29 2020 22:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 112.85053 * 2 1 4 4 C 1.53773 * 113.61817 * 228.80370 * 2 1 3 5 5 C 1.53784 * 87.08410 * 270.88598 * 4 2 1 6 6 H 1.08993 * 113.61651 * 89.18989 * 5 4 2 7 7 N 1.46893 * 113.61429 * 220.02194 * 5 4 2 8 8 C 1.46905 * 110.99997 * 204.99354 * 7 5 4 9 9 C 1.53002 * 109.47366 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47078 * 55.00164 * 9 8 7 11 11 C 1.47199 * 109.46895 * 294.99799 * 9 8 7 12 12 N 6.79047 * 120.11075 * 199.25070 * 2 1 3 13 13 C 1.52998 * 109.46763 * 175.00267 * 9 8 7 14 14 C 1.50710 * 109.46835 * 184.99882 * 13 9 8 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 9 16 16 C 1.37871 * 119.99889 * 179.97438 * 14 13 9 17 17 N 1.31521 * 119.99864 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00249 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47272 * 90.00066 * 18 16 14 20 20 H 1.48500 * 109.47433 * 209.99702 * 18 16 14 21 21 H 1.48499 * 109.47071 * 329.99842 * 18 16 14 22 22 C 1.53781 * 113.61623 * 131.30231 * 2 1 3 23 23 H 1.09002 * 109.47153 * 191.19594 * 1 2 3 24 24 H 1.09001 * 109.46832 * 71.19785 * 1 2 3 25 25 H 1.09004 * 109.47261 * 311.19767 * 1 2 3 26 26 H 0.96699 * 113.99621 * 50.32935 * 3 2 1 27 27 H 1.09003 * 113.61658 * 25.43333 * 4 2 1 28 28 H 1.09000 * 113.61693 * 156.25081 * 4 2 1 29 29 H 1.00900 * 111.00649 * 81.04191 * 7 5 4 30 30 H 1.08998 * 109.47108 * 300.00118 * 8 7 5 31 31 H 1.09006 * 109.46677 * 60.00015 * 8 7 5 32 32 H 1.09001 * 109.47659 * 304.99464 * 13 9 8 33 33 H 1.09001 * 109.47696 * 65.00430 * 13 9 8 34 34 H 0.97004 * 119.99859 * 179.97438 * 17 16 14 35 35 H 1.09002 * 113.61952 * 203.66464 * 22 2 1 36 36 H 1.09002 * 113.61550 * 334.57258 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 2.0929 -2.0426 -0.0019 6 1 1.1574 -2.6018 -0.0034 7 7 3.2772 -2.9116 -0.0027 8 6 2.9590 -4.2356 0.5484 9 6 4.2140 -5.1106 0.5306 10 1 5.0193 -4.6016 1.0602 11 6 4.6211 -5.3563 -0.8625 12 7 4.9366 -5.5457 -1.9367 13 6 3.9153 -6.4447 1.2174 14 6 5.1814 -7.2569 1.3094 15 1 6.1066 -6.8609 0.9176 16 6 5.1588 -8.5050 1.8947 17 7 6.2639 -9.2136 1.9755 18 14 3.5586 -9.1897 2.5730 19 1 2.8547 -9.9495 1.5088 20 1 3.8512 -10.0930 3.7149 21 1 2.6979 -8.0712 3.0346 22 6 2.1460 -0.9300 1.0585 23 1 -0.3633 -1.0081 0.1995 24 1 -0.3633 0.3312 -0.9729 25 1 -0.3634 0.6769 0.7733 26 1 1.7179 1.8983 0.6800 27 1 1.4946 -1.1068 -1.9156 28 1 3.1586 -0.6476 -1.3505 29 1 4.0399 -2.4841 0.5010 30 1 2.6058 -4.1271 1.5738 31 1 2.1818 -4.7034 -0.0560 32 1 3.5292 -6.2591 2.2197 33 1 3.1730 -6.9936 0.6379 34 1 6.2480 -10.0916 2.3876 35 1 3.1591 -0.6511 1.3484 36 1 1.4945 -1.1104 1.9136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262572061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:34 Heat of formation + Delta-G solvation = -40.219769 kcal Electronic energy + Delta-G solvation = -16484.471600 eV Core-core repulsion = 13774.817760 eV Total energy + Delta-G solvation = -2709.653840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83697 -38.57830 -36.66196 -35.61897 -34.61113 -32.80235 -29.71804 -28.20366 -26.67334 -24.38711 -23.36496 -22.96444 -20.04201 -18.89443 -18.39195 -17.80685 -16.62040 -16.40519 -16.09567 -15.48822 -15.22712 -15.14157 -14.60390 -14.38456 -14.03578 -13.79294 -13.64906 -13.39034 -13.22361 -13.08467 -12.85653 -12.60515 -12.47796 -12.26227 -11.90693 -11.83813 -11.70104 -11.61212 -11.35982 -11.19621 -10.72896 -10.62008 -9.21373 -8.23752 -6.29657 1.44331 1.45613 1.56583 2.06734 2.13863 2.42100 3.05885 3.13022 3.32134 3.50745 3.63116 3.72054 3.91915 3.95825 4.20515 4.34999 4.47721 4.62776 4.72021 4.80583 4.81900 4.90203 4.92519 4.94097 5.10093 5.13495 5.26336 5.32454 5.38661 5.46446 5.65015 6.15851 6.27960 6.51743 6.78212 6.91868 6.94862 7.34912 8.93329 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038222 B = 0.004606 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.390336 B = 6077.474967 C = 6450.734092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.102 3.898 3 O -0.574 6.574 4 C -0.124 4.124 5 C 0.074 3.926 6 H 0.112 0.888 7 N -0.695 5.695 8 C 0.076 3.924 9 C 0.023 3.977 10 H 0.115 0.885 11 C 0.262 3.738 12 N -0.518 5.518 13 C -0.003 4.003 14 C -0.532 4.532 15 H 0.027 0.973 16 C 0.002 3.998 17 N -0.956 5.956 18 Si 0.949 3.051 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.221 1.221 22 C -0.181 4.181 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.390 0.610 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.350 0.650 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 19.419 3.095 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 O -0.382 6.382 4 C -0.163 4.163 5 C -0.036 4.036 6 H 0.130 0.870 7 N -0.326 5.326 8 C -0.054 4.054 9 C 0.001 3.999 10 H 0.133 0.867 11 C -0.054 4.054 12 N -0.196 5.196 13 C -0.042 4.042 14 C -0.570 4.570 15 H 0.045 0.955 16 C -0.195 4.195 17 N -0.596 5.596 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.143 1.143 22 C -0.220 4.220 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.240 0.760 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.170 0.830 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.613 18.545 0.383 24.245 hybrid contribution -0.105 -0.381 1.696 1.741 sum -15.718 18.164 2.079 24.111 Atomic orbital electron populations 1.22142 0.92187 1.03946 1.03168 1.22544 0.93331 0.81412 0.96615 1.86542 1.67496 1.23833 1.60354 1.23254 1.01271 0.94407 0.97337 1.22808 0.93983 0.91204 0.95619 0.86974 1.60317 1.08700 1.03451 1.60181 1.22001 0.94781 0.88098 1.00470 1.19107 0.99764 0.98525 0.82499 0.86735 1.29471 0.91090 0.89967 0.94874 1.80975 1.11277 1.12035 1.15310 1.19594 0.95637 0.91217 0.97710 1.21430 0.95455 1.01969 1.38172 0.95463 1.26069 1.00268 0.97175 0.95978 1.70101 1.30241 1.12851 1.46448 0.85679 0.79544 0.79628 0.77923 1.20303 1.21627 1.14281 1.24325 1.02389 0.97082 0.98219 0.90277 0.91842 0.90395 0.76020 0.90993 0.91040 0.83038 0.90223 0.90255 0.91537 0.95583 0.92686 0.89720 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.33 71.98 0.67 -1.01 16 2 C 0.10 1.58 1.93 -10.27 -0.02 1.56 16 3 O -0.57 -9.98 13.49 -148.98 -2.01 -11.99 16 4 C -0.12 -2.47 7.30 31.12 0.23 -2.24 16 5 C 0.07 1.31 3.83 45.45 0.17 1.49 16 6 H 0.11 1.72 7.38 -2.39 -0.02 1.70 16 7 N -0.70 -15.51 6.32 -488.83 -3.09 -18.60 16 8 C 0.08 1.78 4.89 86.30 0.42 2.20 16 9 C 0.02 0.75 2.35 -12.60 -0.03 0.73 16 10 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 11 C 0.26 10.82 13.67 89.45 1.22 12.04 16 12 N -0.52 -24.18 18.53 20.00 0.37 -23.81 16 13 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 14 C -0.53 -28.70 9.15 25.60 0.23 -28.47 16 15 H 0.03 1.67 7.84 -2.91 -0.02 1.65 16 16 C 0.00 0.09 5.47 84.65 0.46 0.55 16 17 N -0.96 -59.34 13.96 21.45 0.30 -59.04 16 18 Si 0.95 41.09 27.47 68.60 1.88 42.97 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.22 -7.98 6.54 99.48 0.65 -7.33 16 22 C -0.18 -2.64 7.09 31.12 0.22 -2.42 16 23 H 0.08 0.74 7.34 -2.39 -0.02 0.72 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.39 3.38 9.06 -74.06 -0.67 2.71 16 27 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.35 7.28 8.19 -89.69 -0.73 6.55 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.85 8.13 -2.38 -0.02 1.83 16 32 H 0.07 2.31 7.20 -2.39 -0.02 2.29 16 33 H 0.03 1.02 7.57 -2.39 -0.02 1.00 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.08 1.39 7.82 -2.39 -0.02 1.37 16 36 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 Total: -1.00 -72.62 304.79 0.77 -71.85 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.38 Total: 14.20 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.69 Total: -15.58 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -2.42 Total: -101.45 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -2.01 Total: -11.99 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Total: -72.62 0.77 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262572061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.632 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds