Wall clock time and date at job start Sun Mar 29 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50702 * 119.99830 * 2 1 4 4 C 1.53002 * 109.46654 * 94.19202 * 3 2 1 5 5 C 1.47101 * 119.99963 * 180.02562 * 2 1 3 6 6 O 1.21617 * 119.99525 * 255.88359 * 5 2 1 7 7 N 1.34772 * 120.00068 * 75.89124 * 5 2 1 8 8 C 1.46971 * 120.59077 * 185.16358 * 7 5 2 9 9 C 1.53372 * 108.63146 * 235.24588 * 8 7 5 10 10 N 1.46968 * 108.63644 * 310.57509 * 9 8 7 11 11 C 1.36931 * 120.59407 * 235.20299 * 10 9 8 12 12 H 1.08007 * 119.99947 * 148.08290 * 11 10 9 13 13 C 1.38814 * 120.00132 * 327.80209 * 11 10 9 14 14 N 1.31618 * 119.99862 * 349.47127 * 13 11 10 15 15 Si 1.86802 * 119.99999 * 169.46693 * 13 11 10 16 16 H 1.48507 * 109.47032 * 59.99903 * 15 13 11 17 17 H 1.48500 * 109.47086 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47127 * 300.00339 * 15 13 11 19 19 C 1.46963 * 118.81075 * 55.48361 * 10 9 8 20 20 C 1.46968 * 120.59676 * 5.18290 * 7 5 2 21 21 H 1.07997 * 119.99894 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.99641 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47255 * 214.19122 * 3 2 1 24 24 H 1.09006 * 109.47377 * 334.19704 * 3 2 1 25 25 H 1.08999 * 109.47224 * 299.99938 * 4 3 2 26 26 H 1.08997 * 109.47029 * 60.00242 * 4 3 2 27 27 H 1.09002 * 109.47185 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.60623 * 115.50619 * 8 7 5 29 29 H 1.08991 * 109.75395 * 355.07153 * 8 7 5 30 30 H 1.09001 * 109.60947 * 190.83494 * 9 8 7 31 31 H 1.08998 * 109.75439 * 70.40506 * 9 8 7 32 32 H 0.97004 * 119.99682 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.61263 * 64.25944 * 19 10 9 34 34 H 1.09004 * 109.61258 * 184.77592 * 19 10 9 35 35 H 1.08994 * 109.60761 * 244.49748 * 20 7 5 36 36 H 1.09000 * 109.60549 * 4.84184 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4297 1.6940 1.4387 5 6 2.0655 -1.2739 -0.0006 6 8 2.5920 -1.6725 1.0207 7 7 2.1560 -1.9993 -1.1328 8 6 2.7892 -3.3255 -1.1228 9 6 3.9107 -3.3410 -2.1690 10 7 3.3784 -2.8197 -3.4358 11 6 3.4713 -3.5564 -4.5864 12 1 2.7044 -3.4756 -5.3427 13 6 4.5539 -4.4025 -4.7834 14 7 5.5890 -4.3466 -3.9722 15 14 4.5419 -5.6205 -6.1996 16 1 4.4230 -4.8849 -7.4842 17 1 5.8046 -6.4021 -6.1911 18 1 3.3881 -6.5432 -6.0491 19 6 2.7503 -1.4912 -3.4469 20 6 1.6237 -1.4780 -2.3997 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9354 -0.0004 23 1 3.0013 1.1948 -0.5775 24 1 1.4639 2.0825 -0.4473 25 1 1.5119 1.8043 2.0162 26 1 3.0493 0.9168 1.8860 27 1 2.9751 2.6378 1.4388 28 1 2.0486 -4.0863 -1.3693 29 1 3.2065 -3.5271 -0.1363 30 1 4.2627 -4.3625 -2.3129 31 1 4.7363 -2.7135 -1.8333 32 1 6.3454 -4.9381 -4.1097 33 1 3.4931 -0.7332 -3.1985 34 1 2.3357 -1.2907 -4.4349 35 1 0.8002 -2.1074 -2.7369 36 1 1.2690 -0.4576 -2.2551 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263737816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:17 Heat of formation + Delta-G solvation = 5.078383 kcal Electronic energy + Delta-G solvation = -17537.706067 eV Core-core repulsion = 14830.016503 eV Total energy + Delta-G solvation = -2707.689564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.72395 -36.83335 -35.26589 -33.81726 -31.19719 -30.67305 -29.81167 -26.94351 -24.28266 -23.56828 -22.92576 -21.83516 -19.77682 -18.15342 -16.76159 -15.99729 -15.69714 -15.04294 -14.81359 -14.18251 -13.96216 -13.64539 -13.29311 -13.27589 -13.15611 -12.85019 -12.25639 -12.13494 -11.74162 -11.31362 -11.18145 -10.94569 -10.84832 -10.71758 -10.57476 -10.23148 -10.01053 -9.86106 -9.47635 -9.12332 -8.58026 -8.23442 -6.65767 -5.84360 -3.36012 1.88835 2.97033 3.34481 3.40126 3.40694 3.54453 4.42882 4.72652 4.86506 5.20662 5.29798 5.33960 5.36443 5.56454 5.65467 5.76292 5.79313 5.87944 5.93015 5.95151 6.13488 6.26385 6.29166 6.38723 6.42428 6.50998 6.56859 6.71911 6.89897 7.27916 7.58245 7.71275 7.91723 8.39350 8.55431 9.13138 9.73685 10.32659 11.22614 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046415 B = 0.006007 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.105435 B = 4660.110039 C = 4793.711182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C -0.078 4.078 4 C -0.146 4.146 5 C 0.545 3.455 6 O -0.552 6.552 7 N -0.590 5.590 8 C 0.085 3.915 9 C 0.160 3.840 10 N -0.591 5.591 11 C -0.259 4.259 12 H 0.066 0.934 13 C 0.007 3.993 14 N -0.903 5.903 15 Si 0.907 3.093 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.131 3.869 20 C 0.091 3.909 21 H 0.111 0.889 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.023 0.977 32 H 0.257 0.743 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 8.979 5.220 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.116 4.116 4 C -0.203 4.203 5 C 0.333 3.667 6 O -0.431 6.431 7 N -0.322 5.322 8 C -0.038 4.038 9 C 0.034 3.966 10 N -0.314 5.314 11 C -0.389 4.389 12 H 0.083 0.917 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.737 3.263 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.209 1.209 19 C 0.004 3.996 20 C -0.034 4.034 21 H 0.129 0.871 22 H 0.119 0.881 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.533 8.634 5.711 13.416 hybrid contribution 0.023 -0.663 -0.818 1.053 sum -8.510 7.971 4.893 12.645 Atomic orbital electron populations 1.24211 0.94064 1.02483 0.98759 1.21674 0.95667 0.94923 1.01956 1.20498 1.00148 0.92578 0.98375 1.21723 1.01720 1.01337 0.95541 1.18595 0.80252 0.84370 0.83506 1.90754 1.47885 1.71826 1.32671 1.48096 1.57328 1.18857 1.07914 1.22543 0.97503 0.81938 1.01843 1.21183 0.90772 1.01621 0.83055 1.43960 1.68757 1.13403 1.05288 1.19135 1.03097 1.19987 0.96668 0.91682 1.25225 0.94674 1.01155 0.98190 1.69951 1.06265 1.39501 1.38977 0.86307 0.76922 0.81006 0.82089 1.20783 1.21541 1.20881 1.21376 0.92985 0.89089 0.96143 1.22463 0.97971 0.98305 0.84676 0.87117 0.88051 0.90880 0.90659 0.92749 0.91769 0.92519 0.92180 0.90175 0.88192 0.95847 0.93330 0.95894 0.91484 0.91757 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 13.52 28.92 0.39 -1.41 16 2 C -0.14 -1.96 3.20 -102.84 -0.33 -2.29 16 3 C -0.08 -0.94 6.09 -27.88 -0.17 -1.11 16 4 C -0.15 -1.68 9.89 37.16 0.37 -1.31 16 5 C 0.55 10.05 7.08 -12.67 -0.09 9.96 16 6 O -0.55 -12.00 16.52 5.26 0.09 -11.91 16 7 N -0.59 -11.13 2.95 -173.60 -0.51 -11.64 16 8 C 0.09 1.76 6.59 -3.59 -0.02 1.74 16 9 C 0.16 3.87 5.45 -3.59 -0.02 3.85 16 10 N -0.59 -14.55 2.95 -171.76 -0.51 -15.06 16 11 C -0.26 -6.91 9.57 -15.06 -0.14 -7.05 16 12 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 13 C 0.01 0.18 5.05 -17.43 -0.09 0.10 16 14 N -0.90 -25.88 11.07 55.49 0.61 -25.27 16 15 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.13 2.64 6.70 -3.36 -0.02 2.62 16 20 C 0.09 1.52 6.40 -3.36 -0.02 1.50 16 21 H 0.11 0.96 8.03 -52.49 -0.42 0.54 16 22 H 0.10 1.17 8.05 -52.48 -0.42 0.75 16 23 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 24 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.67 7.00 -51.93 -0.36 1.31 16 30 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.04 6.09 -51.93 -0.32 0.72 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -30.87 296.41 -6.62 -37.49 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.60 Total: -0.85 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.15 Total: 6.59 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.40 Total: -51.97 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.87 -6.62 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263737816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.565 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds