Wall clock time and date at job start Sun Mar 29 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50702 * 119.99830 * 2 1 4 4 C 1.53002 * 109.46654 * 94.19202 * 3 2 1 5 5 C 1.47101 * 119.99963 * 180.02562 * 2 1 3 6 6 O 1.21617 * 119.99525 * 255.88359 * 5 2 1 7 7 N 1.34772 * 120.00068 * 75.89124 * 5 2 1 8 8 C 1.46971 * 120.59077 * 185.16358 * 7 5 2 9 9 C 1.53372 * 108.63146 * 235.24588 * 8 7 5 10 10 N 1.46968 * 108.63644 * 310.57509 * 9 8 7 11 11 C 1.36931 * 120.59407 * 235.20299 * 10 9 8 12 12 H 1.08007 * 119.99947 * 148.08290 * 11 10 9 13 13 C 1.38814 * 120.00132 * 327.80209 * 11 10 9 14 14 N 1.31618 * 119.99862 * 349.47127 * 13 11 10 15 15 Si 1.86802 * 119.99999 * 169.46693 * 13 11 10 16 16 H 1.48507 * 109.47032 * 59.99903 * 15 13 11 17 17 H 1.48500 * 109.47086 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47127 * 300.00339 * 15 13 11 19 19 C 1.46963 * 118.81075 * 55.48361 * 10 9 8 20 20 C 1.46968 * 120.59676 * 5.18290 * 7 5 2 21 21 H 1.07997 * 119.99894 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.99641 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47255 * 214.19122 * 3 2 1 24 24 H 1.09006 * 109.47377 * 334.19704 * 3 2 1 25 25 H 1.08999 * 109.47224 * 299.99938 * 4 3 2 26 26 H 1.08997 * 109.47029 * 60.00242 * 4 3 2 27 27 H 1.09002 * 109.47185 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.60623 * 115.50619 * 8 7 5 29 29 H 1.08991 * 109.75395 * 355.07153 * 8 7 5 30 30 H 1.09001 * 109.60947 * 190.83494 * 9 8 7 31 31 H 1.08998 * 109.75439 * 70.40506 * 9 8 7 32 32 H 0.97004 * 119.99682 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.61263 * 64.25944 * 19 10 9 34 34 H 1.09004 * 109.61258 * 184.77592 * 19 10 9 35 35 H 1.08994 * 109.60761 * 244.49748 * 20 7 5 36 36 H 1.09000 * 109.60549 * 4.84184 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4297 1.6940 1.4387 5 6 2.0655 -1.2739 -0.0006 6 8 2.5920 -1.6725 1.0207 7 7 2.1560 -1.9993 -1.1328 8 6 2.7892 -3.3255 -1.1228 9 6 3.9107 -3.3410 -2.1690 10 7 3.3784 -2.8197 -3.4358 11 6 3.4713 -3.5564 -4.5864 12 1 2.7044 -3.4756 -5.3427 13 6 4.5539 -4.4025 -4.7834 14 7 5.5890 -4.3466 -3.9722 15 14 4.5419 -5.6205 -6.1996 16 1 4.4230 -4.8849 -7.4842 17 1 5.8046 -6.4021 -6.1911 18 1 3.3881 -6.5432 -6.0491 19 6 2.7503 -1.4912 -3.4469 20 6 1.6237 -1.4780 -2.3997 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9354 -0.0004 23 1 3.0013 1.1948 -0.5775 24 1 1.4639 2.0825 -0.4473 25 1 1.5119 1.8043 2.0162 26 1 3.0493 0.9168 1.8860 27 1 2.9751 2.6378 1.4388 28 1 2.0486 -4.0863 -1.3693 29 1 3.2065 -3.5271 -0.1363 30 1 4.2627 -4.3625 -2.3129 31 1 4.7363 -2.7135 -1.8333 32 1 6.3454 -4.9381 -4.1097 33 1 3.4931 -0.7332 -3.1985 34 1 2.3357 -1.2907 -4.4349 35 1 0.8002 -2.1074 -2.7369 36 1 1.2690 -0.4576 -2.2551 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263737816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:17 Heat of formation + Delta-G solvation = -14.269119 kcal Electronic energy + Delta-G solvation = -17538.545038 eV Core-core repulsion = 14830.016503 eV Total energy + Delta-G solvation = -2708.528535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18151 -38.50533 -36.38263 -35.57654 -33.07902 -32.14367 -31.03194 -28.71176 -25.87731 -24.85166 -24.43547 -23.29286 -21.39024 -19.69187 -18.40785 -17.49297 -17.09228 -16.73975 -16.37175 -15.54181 -15.40762 -15.37050 -15.02792 -14.83248 -14.24463 -14.03780 -13.65417 -13.38920 -13.17064 -13.03121 -12.66349 -12.51741 -12.37112 -12.26930 -12.03562 -11.92825 -11.84062 -11.68840 -10.82528 -10.61394 -10.18155 -9.86308 -8.63325 -7.88778 -5.44601 0.89934 1.48485 1.50394 1.56590 1.57736 2.12307 2.50266 3.27423 3.53845 3.58999 3.93397 4.21745 4.25464 4.30636 4.38487 4.47917 4.51567 4.61940 4.70049 4.75773 4.83792 4.88450 5.02003 5.05095 5.06599 5.21957 5.36373 5.41611 5.46851 5.57994 5.61017 5.67024 6.36460 6.46985 7.08482 7.11065 7.76250 8.31975 9.16108 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046415 B = 0.006007 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.105435 B = 4660.110039 C = 4793.711182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.172 4.172 3 C -0.074 4.074 4 C -0.144 4.144 5 C 0.541 3.459 6 O -0.595 6.595 7 N -0.597 5.597 8 C 0.099 3.901 9 C 0.173 3.827 10 N -0.609 5.609 11 C -0.266 4.266 12 H 0.076 0.924 13 C -0.049 4.049 14 N -0.940 5.940 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.298 1.298 18 H -0.275 1.275 19 C 0.126 3.874 20 C 0.103 3.897 21 H 0.152 0.848 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H -0.011 1.011 32 H 0.251 0.749 33 H 0.013 0.987 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 10.640 4.502 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.174 4.174 3 C -0.111 4.111 4 C -0.201 4.201 5 C 0.331 3.669 6 O -0.477 6.477 7 N -0.328 5.328 8 C -0.025 4.025 9 C 0.046 3.954 10 N -0.333 5.333 11 C -0.396 4.396 12 H 0.093 0.907 13 C -0.244 4.244 14 N -0.586 5.586 15 Si 0.802 3.198 16 H -0.198 1.198 17 H -0.224 1.224 18 H -0.201 1.201 19 C 0.000 4.000 20 C -0.021 4.021 21 H 0.169 0.831 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.007 0.993 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.446 10.331 4.979 16.203 hybrid contribution 0.866 -1.130 -0.564 1.531 sum -10.580 9.201 4.415 14.700 Atomic orbital electron populations 1.24578 0.92807 1.04389 0.93924 1.21554 0.96455 0.93115 1.06312 1.20534 0.99807 0.92492 0.98307 1.21718 1.01960 1.00919 0.95544 1.19453 0.79572 0.85437 0.82404 1.90725 1.49732 1.73056 1.34171 1.48207 1.57276 1.18137 1.09180 1.22140 0.96561 0.83886 0.99938 1.20844 0.91132 0.99100 0.84342 1.44212 1.69040 1.15239 1.04760 1.19542 1.03014 1.19886 0.97142 0.90663 1.26026 0.94455 1.03202 1.00746 1.70138 1.06958 1.40506 1.40963 0.85250 0.76519 0.78724 0.79353 1.19775 1.22389 1.20065 1.21575 0.93556 0.86500 0.98334 1.22441 0.96473 1.00688 0.82468 0.83067 0.88134 0.92885 0.86929 0.91385 0.95299 0.90760 0.91352 0.91021 0.91118 0.99305 0.93995 0.96936 0.89929 0.90602 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 13.52 66.65 0.90 -1.25 16 2 C -0.17 -4.33 3.20 -18.70 -0.06 -4.39 16 3 C -0.07 -1.56 6.09 29.85 0.18 -1.38 16 4 C -0.14 -3.05 9.89 71.98 0.71 -2.34 16 5 C 0.54 19.58 7.08 86.57 0.61 20.19 16 6 O -0.59 -26.39 16.52 -4.09 -0.07 -26.46 16 7 N -0.60 -22.07 2.95 -821.41 -2.42 -24.49 16 8 C 0.10 4.20 6.59 86.41 0.57 4.77 16 9 C 0.17 8.72 5.45 86.41 0.47 9.20 16 10 N -0.61 -30.24 2.95 -697.33 -2.06 -32.29 16 11 C -0.27 -14.16 9.57 84.03 0.80 -13.36 16 12 H 0.08 3.79 7.85 -2.91 -0.02 3.76 16 13 C -0.05 -2.69 5.05 84.86 0.43 -2.26 16 14 N -0.94 -55.79 11.07 21.65 0.24 -55.55 16 15 Si 0.97 43.90 29.57 68.60 2.03 45.92 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.13 4.95 6.70 86.57 0.58 5.53 16 20 C 0.10 3.20 6.40 86.57 0.55 3.75 16 21 H 0.15 1.57 8.03 -2.91 -0.02 1.55 16 22 H 0.10 1.87 8.05 -2.91 -0.02 1.85 16 23 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 24 H 0.11 1.55 8.02 -2.38 -0.02 1.53 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 3.13 7.00 -2.39 -0.02 3.11 16 30 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 2.95 7.93 -2.39 -0.02 2.93 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.11 2.67 6.09 -2.39 -0.01 2.66 16 Total: -1.00 -69.75 296.41 4.52 -65.23 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.04 Total: 9.19 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.76 Total: 18.46 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -4.24 Total: -112.34 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.07 Total: -26.46 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.75 4.52 -65.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263737816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.958 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds