Wall clock time and date at job start Sun Mar 29 2020 22:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 119.99926 * 2 1 4 4 C 1.32998 * 120.00304 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99749 * 359.97438 * 4 2 1 6 6 O 1.21619 * 119.99753 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00048 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99900 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.84773 * 23.80580 * 8 7 5 10 10 C 1.53781 * 113.60741 * 155.00019 * 8 7 5 11 11 C 1.53788 * 87.08169 * 89.11900 * 10 8 7 12 12 H 1.08996 * 113.61005 * 270.79727 * 11 10 8 13 13 N 1.46500 * 113.61507 * 139.97339 * 11 10 8 14 14 C 1.36935 * 119.99795 * 154.99729 * 13 11 10 15 15 H 1.08006 * 119.99956 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99934 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99927 * 18 16 14 22 22 C 1.53781 * 113.61506 * 252.49679 * 8 7 5 23 23 H 1.08993 * 109.46889 * 240.00018 * 1 2 3 24 24 H 1.08999 * 109.47111 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46886 * 120.00246 * 1 2 3 26 26 H 1.09009 * 109.47253 * 269.99880 * 3 2 1 27 27 H 1.08997 * 109.47625 * 30.00281 * 3 2 1 28 28 H 1.09003 * 109.47225 * 150.00635 * 3 2 1 29 29 H 1.07993 * 120.00271 * 180.02562 * 4 2 1 30 30 H 0.96997 * 119.99814 * 0.02562 * 7 5 4 31 31 H 1.08997 * 113.62329 * 334.56835 * 10 8 7 32 32 H 1.09008 * 113.68550 * 203.67386 * 10 8 7 33 33 H 0.96997 * 120.00022 * 335.00203 * 13 11 10 34 34 H 0.97004 * 120.00335 * 0.02562 * 17 16 14 35 35 H 1.08998 * 113.61202 * 156.33752 * 22 8 7 36 36 H 1.09000 * 113.61477 * 25.43787 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0005 8 6 1.3779 -4.8616 0.0001 9 1 0.3702 -4.7687 -0.4050 10 6 2.1757 -6.0337 -0.5955 11 6 2.7159 -6.2837 0.8225 12 1 3.6274 -5.7296 1.0464 13 7 2.8125 -7.7032 1.1718 14 6 3.7062 -8.1145 2.1243 15 1 4.3396 -7.3925 2.6182 16 6 3.7982 -9.4595 2.4549 17 7 3.0268 -10.3395 1.8527 18 14 5.0169 -10.0206 3.7547 19 1 5.7605 -8.8456 4.2761 20 1 5.9735 -10.9842 3.1533 21 1 4.2860 -10.6781 4.8677 22 6 1.4374 -5.6067 1.3440 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 2.4422 1.6198 -1.0277 27 1 1.6715 2.0648 0.5138 28 1 3.2129 1.1748 0.5137 29 1 3.2519 -1.1518 -0.0001 30 1 3.0804 -3.5928 -0.0001 31 1 2.9418 -5.7240 -1.3063 32 1 1.5498 -6.8423 -0.9732 33 1 2.2435 -8.3516 0.7284 34 1 2.3942 -10.0483 1.1774 35 1 0.6086 -6.2979 1.4970 36 1 1.6074 -4.9523 2.1989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266574820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:53 Heat of formation + Delta-G solvation = 3.137215 kcal Electronic energy + Delta-G solvation = -16482.845544 eV Core-core repulsion = 13775.071804 eV Total energy + Delta-G solvation = -2707.773740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03678 -38.24745 -35.51583 -34.22503 -32.71781 -29.73206 -28.16804 -27.76127 -25.18238 -24.25360 -22.60566 -21.40068 -19.17666 -18.56173 -17.40467 -16.98705 -15.63028 -15.24444 -14.89408 -14.50271 -14.22240 -13.86964 -13.77733 -13.51536 -13.03564 -12.61183 -12.58390 -12.10158 -11.96081 -11.92210 -11.73957 -11.46897 -10.80247 -10.52125 -10.29048 -10.11006 -9.95145 -9.53667 -9.34048 -9.15712 -8.90539 -8.68224 -7.05352 -6.13405 -3.13399 1.28164 3.31167 3.34994 3.50435 3.57118 3.66416 4.58686 4.65123 4.65906 4.97951 5.06516 5.17592 5.20857 5.25668 5.39312 5.48764 5.50188 5.56686 5.74883 5.81655 5.82826 5.95879 6.05668 6.17086 6.24480 6.33012 6.38809 6.50996 6.60020 6.64064 7.03459 7.68600 7.79205 8.36945 8.72744 9.19436 10.05771 10.20770 11.34976 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047938 B = 0.004101 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.952408 B = 6826.077221 C = 7141.094067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.126 4.126 4 C -0.234 4.234 5 C 0.544 3.456 6 O -0.546 6.546 7 N -0.705 5.705 8 C 0.118 3.882 9 H 0.095 0.905 10 C -0.161 4.161 11 C 0.172 3.828 12 H 0.075 0.925 13 N -0.725 5.725 14 C -0.336 4.336 15 H 0.066 0.934 16 C -0.045 4.045 17 N -0.944 5.944 18 Si 1.086 2.914 19 H -0.295 1.295 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.176 4.176 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.369 0.631 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 20.629 -5.206 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.183 4.183 4 C -0.255 4.255 5 C 0.334 3.666 6 O -0.427 6.427 7 N -0.354 5.354 8 C 0.012 3.988 9 H 0.113 0.887 10 C -0.201 4.201 11 C 0.060 3.940 12 H 0.093 0.907 13 N -0.364 5.364 14 C -0.467 4.467 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.589 5.589 18 Si 0.917 3.083 19 H -0.221 1.221 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.218 4.218 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.077 19.391 -4.255 19.882 hybrid contribution -0.178 1.102 -0.911 1.441 sum -1.255 20.494 -5.166 21.172 Atomic orbital electron populations 1.21039 0.90808 1.00848 1.04498 1.22559 0.96945 0.94421 0.90023 1.21015 1.00099 0.94352 1.02801 1.22409 1.00059 0.92068 1.10933 1.18541 0.87443 0.84282 0.76331 1.90759 1.13758 1.87715 1.50426 1.45610 1.10001 1.05223 1.74605 1.21757 0.96247 0.81967 0.98788 0.88669 1.23867 0.99769 0.97069 0.99410 1.21562 0.94581 0.86595 0.91259 0.90737 1.42423 1.45661 1.01817 1.46493 1.20163 1.15877 0.94718 1.15987 0.91615 1.25804 1.03069 0.91737 1.03632 1.70818 1.24756 1.35276 1.28026 0.83145 0.74996 0.74945 0.75226 1.22108 1.21979 1.21957 1.24282 1.02380 0.99196 0.95936 0.89852 0.93140 0.89982 0.90411 0.91023 0.91131 0.85738 0.76585 0.91714 0.89296 0.79778 0.93280 0.89837 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.33 36.00 0.30 -0.94 16 2 C -0.04 -0.37 6.11 -101.17 -0.62 -0.99 16 3 C -0.13 -0.83 9.98 36.01 0.36 -0.47 16 4 C -0.23 -2.55 9.63 -37.81 -0.36 -2.91 16 5 C 0.54 7.74 7.73 -12.67 -0.10 7.65 16 6 O -0.55 -9.35 12.67 5.26 0.07 -9.28 16 7 N -0.70 -9.63 5.26 -54.20 -0.29 -9.92 16 8 C 0.12 1.86 4.33 -67.12 -0.29 1.57 16 9 H 0.10 1.57 7.46 -51.93 -0.39 1.18 16 10 C -0.16 -2.62 7.58 -25.92 -0.20 -2.82 16 11 C 0.17 3.40 4.36 -67.11 -0.29 3.11 16 12 H 0.07 1.46 8.10 -51.93 -0.42 1.03 16 13 N -0.72 -18.18 5.40 -52.63 -0.28 -18.47 16 14 C -0.34 -9.48 9.97 -15.06 -0.15 -9.63 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 16 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 17 N -0.94 -29.27 13.70 55.49 0.76 -28.51 16 18 Si 1.09 26.04 29.92 -169.99 -5.09 20.95 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 23 H 0.08 1.04 7.22 -51.93 -0.37 0.67 16 24 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 25 H 0.08 0.99 7.22 -51.93 -0.37 0.62 16 26 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.40 8.05 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.40 4.60 8.68 -40.82 -0.35 4.25 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.47 8.12 -51.92 -0.42 1.04 16 33 H 0.37 9.51 6.76 -40.82 -0.28 9.23 16 34 H 0.26 7.80 6.78 -40.82 -0.28 7.53 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -32.89 302.29 -7.37 -40.27 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.46 Total: 10.64 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.65 Total: -10.24 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.19 Total: -56.89 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.89 -7.37 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266574820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.404 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds