Wall clock time and date at job start Sun Mar 29 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 119.99926 * 2 1 4 4 C 1.32998 * 120.00304 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99749 * 359.97438 * 4 2 1 6 6 O 1.21619 * 119.99753 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00048 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99900 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.84773 * 23.80580 * 8 7 5 10 10 C 1.53781 * 113.60741 * 155.00019 * 8 7 5 11 11 C 1.53788 * 87.08169 * 89.11900 * 10 8 7 12 12 H 1.08996 * 113.61005 * 270.79727 * 11 10 8 13 13 N 1.46500 * 113.61507 * 139.97339 * 11 10 8 14 14 C 1.36935 * 119.99795 * 154.99729 * 13 11 10 15 15 H 1.08006 * 119.99956 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99934 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99927 * 18 16 14 22 22 C 1.53781 * 113.61506 * 252.49679 * 8 7 5 23 23 H 1.08993 * 109.46889 * 240.00018 * 1 2 3 24 24 H 1.08999 * 109.47111 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46886 * 120.00246 * 1 2 3 26 26 H 1.09009 * 109.47253 * 269.99880 * 3 2 1 27 27 H 1.08997 * 109.47625 * 30.00281 * 3 2 1 28 28 H 1.09003 * 109.47225 * 150.00635 * 3 2 1 29 29 H 1.07993 * 120.00271 * 180.02562 * 4 2 1 30 30 H 0.96997 * 119.99814 * 0.02562 * 7 5 4 31 31 H 1.08997 * 113.62329 * 334.56835 * 10 8 7 32 32 H 1.09008 * 113.68550 * 203.67386 * 10 8 7 33 33 H 0.96997 * 120.00022 * 335.00203 * 13 11 10 34 34 H 0.97004 * 120.00335 * 0.02562 * 17 16 14 35 35 H 1.08998 * 113.61202 * 156.33752 * 22 8 7 36 36 H 1.09000 * 113.61477 * 25.43787 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0005 8 6 1.3779 -4.8616 0.0001 9 1 0.3702 -4.7687 -0.4050 10 6 2.1757 -6.0337 -0.5955 11 6 2.7159 -6.2837 0.8225 12 1 3.6274 -5.7296 1.0464 13 7 2.8125 -7.7032 1.1718 14 6 3.7062 -8.1145 2.1243 15 1 4.3396 -7.3925 2.6182 16 6 3.7982 -9.4595 2.4549 17 7 3.0268 -10.3395 1.8527 18 14 5.0169 -10.0206 3.7547 19 1 5.7605 -8.8456 4.2761 20 1 5.9735 -10.9842 3.1533 21 1 4.2860 -10.6781 4.8677 22 6 1.4374 -5.6067 1.3440 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 2.4422 1.6198 -1.0277 27 1 1.6715 2.0648 0.5138 28 1 3.2129 1.1748 0.5137 29 1 3.2519 -1.1518 -0.0001 30 1 3.0804 -3.5928 -0.0001 31 1 2.9418 -5.7240 -1.3063 32 1 1.5498 -6.8423 -0.9732 33 1 2.2435 -8.3516 0.7284 34 1 2.3942 -10.0483 1.1774 35 1 0.6086 -6.2979 1.4970 36 1 1.6074 -4.9523 2.1989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266574820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:52 Heat of formation + Delta-G solvation = -19.235482 kcal Electronic energy + Delta-G solvation = -16483.815697 eV Core-core repulsion = 13775.071804 eV Total energy + Delta-G solvation = -2708.743893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25884 -39.59555 -36.48849 -35.95376 -34.18232 -31.63457 -28.93809 -28.59624 -26.65323 -26.12823 -24.26483 -22.56998 -20.49839 -19.75809 -19.28719 -18.09543 -16.97201 -16.80693 -16.09980 -15.97835 -15.45420 -15.31076 -15.02442 -14.57778 -14.44239 -13.70146 -13.45713 -13.39848 -13.21446 -13.19624 -12.68099 -12.66558 -12.44352 -12.35940 -11.86743 -11.84820 -11.63895 -11.10492 -10.87571 -10.64265 -10.27697 -9.82448 -9.11677 -8.40848 -5.35016 0.41471 1.58413 1.69892 1.81418 2.22024 2.29743 2.70986 3.36623 3.59750 3.73875 3.78003 3.81174 3.93722 4.16795 4.21473 4.28152 4.57566 4.62981 4.70291 4.78375 4.78890 4.85728 4.91617 5.01865 5.04401 5.11329 5.15267 5.23181 5.53497 5.58419 5.61644 5.68776 6.48101 6.62547 7.07577 7.28814 7.97859 8.09838 9.11119 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047938 B = 0.004101 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.952408 B = 6826.077221 C = 7141.094067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 C -0.123 4.123 4 C -0.249 4.249 5 C 0.537 3.463 6 O -0.583 6.583 7 N -0.699 5.699 8 C 0.137 3.863 9 H 0.089 0.911 10 C -0.143 4.143 11 C 0.158 3.842 12 H 0.081 0.919 13 N -0.740 5.740 14 C -0.334 4.334 15 H 0.069 0.931 16 C -0.106 4.106 17 N -0.977 5.977 18 Si 1.133 2.867 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.293 1.293 22 C -0.172 4.172 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.361 0.639 34 H 0.245 0.755 35 H 0.068 0.932 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 22.963 -5.336 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.179 4.179 4 C -0.270 4.270 5 C 0.329 3.671 6 O -0.465 6.465 7 N -0.349 5.349 8 C 0.030 3.970 9 H 0.108 0.892 10 C -0.183 4.183 11 C 0.048 3.952 12 H 0.099 0.901 13 N -0.380 5.380 14 C -0.466 4.466 15 H 0.087 0.913 16 C -0.297 4.297 17 N -0.625 5.625 18 Si 0.958 3.042 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.220 1.220 22 C -0.214 4.214 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.171 0.829 30 H 0.249 0.751 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.193 0.807 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.397 21.797 -4.404 22.241 hybrid contribution -0.708 0.510 -0.893 1.248 sum -0.311 22.307 -5.297 22.929 Atomic orbital electron populations 1.20998 0.91935 1.01862 1.02525 1.22909 0.96493 0.95815 0.87738 1.21086 1.00302 0.92454 1.04099 1.22476 1.01259 0.90468 1.12780 1.19192 0.87251 0.85332 0.75346 1.90750 1.15456 1.88242 1.52094 1.45530 1.10583 1.04356 1.74458 1.21427 0.96306 0.82738 0.96498 0.89250 1.23676 0.99923 0.97000 0.97657 1.21892 0.95363 0.84070 0.93859 0.90149 1.42627 1.45263 1.03810 1.46285 1.20515 1.15475 0.94829 1.15765 0.91312 1.27228 1.04526 0.92425 1.05514 1.70933 1.26233 1.36002 1.29329 0.82551 0.73284 0.75438 0.72966 1.19480 1.21672 1.22005 1.24139 1.00942 0.99092 0.97271 0.92123 0.90553 0.91819 0.88837 0.89825 0.89895 0.82938 0.75086 0.89511 0.89540 0.80684 0.94483 0.91360 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.33 71.23 0.59 -1.79 16 2 C -0.03 -0.48 6.11 -17.62 -0.11 -0.59 16 3 C -0.12 -1.16 9.98 71.24 0.71 -0.45 16 4 C -0.25 -4.87 9.63 23.43 0.23 -4.65 16 5 C 0.54 14.71 7.73 86.57 0.67 15.38 16 6 O -0.58 -19.99 12.67 -4.09 -0.05 -20.04 16 7 N -0.70 -18.03 5.26 -443.63 -2.33 -20.36 16 8 C 0.14 4.20 4.33 45.52 0.20 4.39 16 9 H 0.09 2.92 7.46 -2.39 -0.02 2.90 16 10 C -0.14 -4.47 7.58 31.12 0.24 -4.24 16 11 C 0.16 6.14 4.36 45.52 0.20 6.34 16 12 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 13 N -0.74 -37.39 5.40 -320.43 -1.73 -39.12 16 14 C -0.33 -18.81 9.97 84.03 0.84 -17.98 16 15 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 16 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 17 N -0.98 -61.61 13.70 21.65 0.30 -61.32 16 18 Si 1.13 52.15 29.92 68.60 2.05 54.20 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 C -0.17 -6.29 7.68 31.12 0.24 -6.06 16 23 H 0.06 1.52 7.22 -2.39 -0.02 1.51 16 24 H 0.08 1.11 7.94 -2.39 -0.02 1.09 16 25 H 0.06 1.54 7.22 -2.39 -0.02 1.52 16 26 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.08 0.62 8.05 -2.39 -0.02 0.61 16 28 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 29 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.41 8.54 8.68 -92.71 -0.81 7.73 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.79 8.12 -2.38 -0.02 2.77 16 33 H 0.36 19.06 6.76 -92.71 -0.63 18.44 16 34 H 0.24 15.37 6.78 -92.70 -0.63 14.74 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.56 302.29 2.29 -69.27 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.21 Total: 32.71 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.27 Total: -15.33 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -3.77 Total: -120.80 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -71.56 2.29 -69.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266574820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.031 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds