Wall clock time and date at job start Sun Mar 29 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32994 * 120.00207 * 2 1 4 4 C 1.50694 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.47099 * 119.99892 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00519 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99647 * 180.02562 * 5 3 2 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 3 9 9 H 1.08995 * 112.85546 * 23.80497 * 8 7 5 10 10 C 1.53782 * 113.61176 * 155.00482 * 8 7 5 11 11 C 1.53784 * 87.08486 * 139.97919 * 10 8 7 12 12 H 1.08999 * 113.61535 * 89.11075 * 11 10 8 13 13 N 1.46500 * 113.61668 * 219.93216 * 11 10 8 14 14 C 1.36933 * 120.00068 * 204.99652 * 13 11 10 15 15 H 1.07997 * 120.00030 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99523 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00718 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99560 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 60.00291 * 18 16 14 20 20 H 1.48503 * 109.46888 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47189 * 299.99959 * 18 16 14 22 22 C 1.53783 * 87.07811 * 334.56860 * 11 10 8 23 23 H 1.08992 * 109.47012 * 59.99800 * 1 2 3 24 24 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46878 * 299.99551 * 1 2 3 26 26 H 1.07999 * 119.99988 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47280 * 269.99860 * 4 3 2 28 28 H 1.09005 * 109.47415 * 30.00149 * 4 3 2 29 29 H 1.09002 * 109.46945 * 149.99418 * 4 3 2 30 30 H 0.96995 * 120.00015 * 359.72716 * 7 5 3 31 31 H 1.09001 * 113.61047 * 254.52498 * 10 8 7 32 32 H 1.08999 * 113.61839 * 25.42459 * 10 8 7 33 33 H 0.97003 * 119.99358 * 25.00129 * 13 11 10 34 34 H 0.96995 * 120.00763 * 179.97438 * 17 16 14 35 35 H 1.09002 * 113.60736 * 270.88373 * 22 11 10 36 36 H 1.08997 * 113.61928 * 139.98604 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3188 0.0011 9 1 6.2051 1.4001 -0.4047 10 6 6.3979 3.5962 -0.5937 11 6 7.4443 3.5210 0.5307 12 1 8.3230 2.9308 0.2707 13 7 7.7845 4.8256 1.1040 14 6 8.9990 5.0122 1.7082 15 1 9.7063 4.1978 1.7617 16 6 9.3215 6.2485 2.2509 17 7 8.4597 7.2411 2.1852 18 14 10.9787 6.5033 3.0745 19 1 12.0636 6.2483 2.0931 20 1 11.0761 7.9002 3.5690 21 1 11.1135 5.5639 4.2167 22 6 6.3979 2.7420 1.3451 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0470 -0.9353 0.0004 27 1 1.2365 2.7717 -1.0269 28 1 0.4663 2.3264 0.5148 29 1 2.0078 3.2163 0.5145 30 1 3.8320 3.1589 -0.0029 31 1 6.8169 3.4557 -1.5901 32 1 5.7464 4.4675 -0.5265 33 1 7.1492 5.5570 1.0556 34 1 8.6849 8.1049 2.5648 35 1 5.7464 3.3798 1.9425 36 1 6.8169 1.9120 1.9140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266676339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:57 Heat of formation + Delta-G solvation = -0.201603 kcal Electronic energy + Delta-G solvation = -16444.287862 eV Core-core repulsion = 13736.369340 eV Total energy + Delta-G solvation = -2707.918522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95167 -38.07432 -35.57852 -34.09360 -32.70733 -30.07984 -29.22985 -26.38399 -25.10552 -24.57086 -22.79141 -20.87145 -19.60934 -18.29878 -17.20689 -16.92114 -16.25273 -15.01685 -14.88981 -14.56193 -14.17647 -13.77441 -13.60371 -13.04701 -12.99117 -12.78802 -12.52340 -12.26485 -12.07746 -11.90211 -11.46360 -11.24686 -10.90981 -10.61375 -10.50381 -10.30607 -10.07070 -9.74286 -9.56109 -9.22060 -8.89993 -8.68005 -6.98576 -5.80141 -3.08991 1.29620 3.32871 3.37191 3.43459 3.47829 3.48928 4.57852 4.65864 4.74047 4.96912 5.03928 5.07821 5.24853 5.25372 5.36749 5.43685 5.48387 5.52073 5.60419 5.74847 5.87670 5.96631 6.13468 6.26353 6.26467 6.31886 6.38387 6.56373 6.63150 6.77690 7.08720 7.68484 7.70465 8.35992 8.38514 9.49683 10.06406 10.41144 11.42274 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054960 B = 0.004028 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.339761 B = 6950.506463 C = 7156.865922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.120 4.120 5 C 0.550 3.450 6 O -0.552 6.552 7 N -0.709 5.709 8 C 0.116 3.884 9 H 0.109 0.891 10 C -0.159 4.159 11 C 0.169 3.831 12 H 0.080 0.920 13 N -0.710 5.710 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.176 4.176 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.624 -10.067 -5.751 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.101 4.101 3 C -0.191 4.191 4 C -0.176 4.176 5 C 0.338 3.662 6 O -0.431 6.431 7 N -0.359 5.359 8 C 0.012 3.988 9 H 0.127 0.873 10 C -0.198 4.198 11 C 0.056 3.944 12 H 0.098 0.902 13 N -0.348 5.348 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.582 5.582 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.218 4.218 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.966 -10.749 -5.668 19.278 hybrid contribution 0.432 0.871 0.529 1.107 sum -14.534 -9.878 -5.139 18.309 Atomic orbital electron populations 1.20973 0.92263 1.02883 1.02499 1.23536 0.96113 0.97993 0.92504 1.21514 0.93042 0.96753 1.07807 1.20840 1.00113 0.94183 1.02485 1.18418 0.87618 0.84015 0.76145 1.90757 1.70154 1.31363 1.50855 1.46009 1.07646 1.08228 1.73999 1.22502 0.78017 0.99267 0.99063 0.87324 1.23862 0.99607 0.96410 0.99968 1.21355 0.93280 0.88712 0.91073 0.90207 1.42346 1.17971 1.07771 1.66715 1.19282 0.93074 0.96093 1.29157 0.91019 1.24761 0.98384 0.96035 1.01660 1.69641 1.35286 1.02448 1.50807 0.86250 0.83648 0.76822 0.79368 1.21183 1.21682 1.21193 1.24327 1.00396 1.00645 0.96427 0.90866 0.91538 0.90727 0.85691 0.90926 0.90972 0.91523 0.76509 0.91490 0.90011 0.78101 0.93395 0.90249 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.91 36.01 0.32 -0.53 16 2 C -0.08 -0.82 9.84 -36.13 -0.36 -1.17 16 3 C -0.19 -2.11 6.00 -102.85 -0.62 -2.73 16 4 C -0.12 -0.97 9.14 36.00 0.33 -0.64 16 5 C 0.55 8.16 7.75 -12.66 -0.10 8.06 16 6 O -0.55 -10.19 15.82 5.27 0.08 -10.10 16 7 N -0.71 -9.82 5.30 -54.20 -0.29 -10.11 16 8 C 0.12 1.83 4.24 -67.12 -0.28 1.54 16 9 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 10 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 11 C 0.17 3.34 4.48 -67.12 -0.30 3.04 16 12 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 13 N -0.71 -17.67 5.40 -52.64 -0.28 -17.95 16 14 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.18 -3.17 7.68 -25.92 -0.20 -3.37 16 23 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.44 7.40 -51.93 -0.38 0.05 16 26 H 0.13 1.40 7.49 -52.49 -0.39 1.01 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.48 6.49 -51.93 -0.34 0.15 16 29 H 0.07 0.54 6.71 -51.93 -0.35 0.19 16 30 H 0.40 4.63 6.83 -40.82 -0.28 4.35 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.38 10.05 7.92 -40.82 -0.32 9.73 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -32.18 302.98 -7.24 -39.42 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.37 Total: 10.07 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.65 Total: -5.95 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.15 Total: -55.31 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.18 -7.24 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266676339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.220 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds