Wall clock time and date at job start Sun Mar 29 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32994 * 120.00207 * 2 1 4 4 C 1.50694 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.47099 * 119.99892 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00519 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99647 * 180.02562 * 5 3 2 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 3 9 9 H 1.08995 * 112.85546 * 23.80497 * 8 7 5 10 10 C 1.53782 * 113.61176 * 155.00482 * 8 7 5 11 11 C 1.53784 * 87.08486 * 139.97919 * 10 8 7 12 12 H 1.08999 * 113.61535 * 89.11075 * 11 10 8 13 13 N 1.46500 * 113.61668 * 219.93216 * 11 10 8 14 14 C 1.36933 * 120.00068 * 204.99652 * 13 11 10 15 15 H 1.07997 * 120.00030 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99523 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00718 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99560 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 60.00291 * 18 16 14 20 20 H 1.48503 * 109.46888 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47189 * 299.99959 * 18 16 14 22 22 C 1.53783 * 87.07811 * 334.56860 * 11 10 8 23 23 H 1.08992 * 109.47012 * 59.99800 * 1 2 3 24 24 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46878 * 299.99551 * 1 2 3 26 26 H 1.07999 * 119.99988 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47280 * 269.99860 * 4 3 2 28 28 H 1.09005 * 109.47415 * 30.00149 * 4 3 2 29 29 H 1.09002 * 109.46945 * 149.99418 * 4 3 2 30 30 H 0.96995 * 120.00015 * 359.72716 * 7 5 3 31 31 H 1.09001 * 113.61047 * 254.52498 * 10 8 7 32 32 H 1.08999 * 113.61839 * 25.42459 * 10 8 7 33 33 H 0.97003 * 119.99358 * 25.00129 * 13 11 10 34 34 H 0.96995 * 120.00763 * 179.97438 * 17 16 14 35 35 H 1.09002 * 113.60736 * 270.88373 * 22 11 10 36 36 H 1.08997 * 113.61928 * 139.98604 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3188 0.0011 9 1 6.2051 1.4001 -0.4047 10 6 6.3979 3.5962 -0.5937 11 6 7.4443 3.5210 0.5307 12 1 8.3230 2.9308 0.2707 13 7 7.7845 4.8256 1.1040 14 6 8.9990 5.0122 1.7082 15 1 9.7063 4.1978 1.7617 16 6 9.3215 6.2485 2.2509 17 7 8.4597 7.2411 2.1852 18 14 10.9787 6.5033 3.0745 19 1 12.0636 6.2483 2.0931 20 1 11.0761 7.9002 3.5690 21 1 11.1135 5.5639 4.2167 22 6 6.3979 2.7420 1.3451 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0470 -0.9353 0.0004 27 1 1.2365 2.7717 -1.0269 28 1 0.4663 2.3264 0.5148 29 1 2.0078 3.2163 0.5145 30 1 3.8320 3.1589 -0.0029 31 1 6.8169 3.4557 -1.5901 32 1 5.7464 4.4675 -0.5265 33 1 7.1492 5.5570 1.0556 34 1 8.6849 8.1049 2.5648 35 1 5.7464 3.3798 1.9425 36 1 6.8169 1.9120 1.9140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266676339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:57 Heat of formation + Delta-G solvation = -22.067566 kcal Electronic energy + Delta-G solvation = -16445.236041 eV Core-core repulsion = 13736.369340 eV Total energy + Delta-G solvation = -2708.866701 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18154 -39.46495 -36.43974 -35.80730 -34.27275 -31.88469 -30.04965 -27.16038 -26.57312 -26.32867 -24.27874 -22.13329 -21.03950 -19.51953 -18.99623 -17.93398 -17.63246 -16.51178 -16.21347 -15.95464 -15.70847 -14.98440 -14.64464 -14.43283 -14.27400 -13.65085 -13.36246 -13.35550 -13.30188 -13.16366 -12.82718 -12.79409 -12.28042 -12.19951 -12.15155 -12.05883 -11.76428 -11.52652 -10.91583 -10.82684 -10.14537 -9.83558 -8.99843 -7.95715 -5.24090 0.40176 1.47927 1.50443 1.56456 2.25182 2.25530 2.57215 3.35606 3.65782 3.77259 3.83991 3.94847 4.01754 4.23539 4.29455 4.31585 4.47895 4.68106 4.76058 4.85829 4.86160 4.88759 4.92274 5.07478 5.12050 5.13111 5.17568 5.36395 5.49384 5.51778 5.61157 5.72856 6.26532 6.59397 7.23078 7.33162 8.08123 8.32289 9.27222 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054960 B = 0.004028 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.339761 B = 6950.506463 C = 7156.865922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.115 4.115 5 C 0.543 3.457 6 O -0.596 6.596 7 N -0.701 5.701 8 C 0.132 3.868 9 H 0.104 0.896 10 C -0.138 4.138 11 C 0.151 3.849 12 H 0.079 0.921 13 N -0.723 5.723 14 C -0.249 4.249 15 H 0.076 0.924 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.972 3.028 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.280 1.280 22 C -0.170 4.170 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.071 0.929 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.972 -10.459 -6.246 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.171 4.171 5 C 0.334 3.666 6 O -0.479 6.479 7 N -0.351 5.351 8 C 0.027 3.973 9 H 0.122 0.878 10 C -0.178 4.178 11 C 0.040 3.960 12 H 0.097 0.903 13 N -0.361 5.361 14 C -0.381 4.381 15 H 0.093 0.907 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.206 1.206 22 C -0.212 4.212 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.250 0.750 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.208 0.792 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.339 -11.168 -6.183 20.735 hybrid contribution 0.802 0.861 0.664 1.351 sum -15.537 -10.307 -5.520 19.445 Atomic orbital electron populations 1.21042 0.89259 1.04153 1.03746 1.23793 0.98204 0.96844 0.90255 1.21538 0.90862 0.98755 1.09850 1.20873 1.00412 0.92236 1.03592 1.19089 0.89294 0.83300 0.74966 1.90730 1.71385 1.32804 1.53010 1.45889 1.06770 1.08914 1.73562 1.22163 0.79331 0.98834 0.97006 0.87808 1.23663 0.98056 0.96694 0.99385 1.21658 0.94446 0.86920 0.92973 0.90279 1.42481 1.17078 1.09262 1.67239 1.19672 0.94016 0.96104 1.28269 0.90650 1.25541 1.01839 0.96030 1.03127 1.69787 1.37065 1.02653 1.52345 0.85239 0.79863 0.76330 0.78492 1.20318 1.22084 1.20622 1.24166 0.99856 0.99903 0.97262 0.89279 0.90447 0.89362 0.87596 0.89632 0.89075 0.91703 0.74983 0.89843 0.89333 0.79160 0.93931 0.91076 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.91 71.24 0.63 -0.63 16 2 C -0.07 -1.31 9.84 24.52 0.24 -1.07 16 3 C -0.21 -4.32 6.00 -18.71 -0.11 -4.43 16 4 C -0.11 -1.55 9.14 71.23 0.65 -0.90 16 5 C 0.54 15.78 7.75 86.57 0.67 16.45 16 6 O -0.60 -22.20 15.82 -4.06 -0.06 -22.27 16 7 N -0.70 -18.64 5.30 -443.64 -2.35 -21.00 16 8 C 0.13 4.05 4.24 45.52 0.19 4.25 16 9 H 0.10 3.36 7.46 -2.39 -0.02 3.35 16 10 C -0.14 -4.27 7.58 31.12 0.24 -4.04 16 11 C 0.15 5.91 4.48 45.52 0.20 6.12 16 12 H 0.08 3.10 8.10 -2.39 -0.02 3.08 16 13 N -0.72 -36.12 5.40 -320.45 -1.73 -37.85 16 14 C -0.25 -13.83 9.97 84.03 0.84 -12.99 16 15 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 17 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 18 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 C -0.17 -6.11 7.68 31.12 0.24 -5.87 16 23 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 0.71 7.40 -2.39 -0.02 0.70 16 26 H 0.11 2.35 7.49 -2.91 -0.02 2.33 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.89 6.49 -2.38 -0.02 0.88 16 29 H 0.06 0.89 6.71 -2.39 -0.02 0.88 16 30 H 0.41 8.86 6.83 -92.71 -0.63 8.23 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 33 H 0.38 19.84 7.92 -92.71 -0.73 19.11 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.48 302.98 2.14 -67.34 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.28 Total: 30.89 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.26 Total: -6.82 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -3.80 Total: -117.24 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.48 2.14 -67.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266676339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds