Wall clock time and date at job start Sun Mar 29 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 115.54582 * 2 1 4 4 O 1.21280 * 119.99674 * 214.41948 * 3 2 1 5 5 N 1.34776 * 120.00384 * 34.41982 * 3 2 1 6 6 C 1.46497 * 120.00106 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46721 * 180.02562 * 6 5 3 8 8 C 1.31001 * 119.99832 * 127.05010 * 7 6 5 9 9 C 1.50703 * 120.00136 * 7.83573 * 8 7 6 10 10 N 1.46496 * 109.47279 * 127.09459 * 9 8 7 11 11 C 1.36938 * 120.00067 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00267 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00001 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46981 * 120.00548 * 15 13 11 18 18 H 1.48503 * 109.47305 * 239.99917 * 15 13 11 19 19 C 1.52992 * 117.50219 * 145.67307 * 2 1 3 20 20 C 1.52998 * 117.49653 * 214.33483 * 2 1 3 21 21 H 1.08995 * 109.47443 * 85.58389 * 1 2 3 22 22 H 1.09001 * 109.46848 * 205.58220 * 1 2 3 23 23 H 1.08998 * 109.46973 * 325.57729 * 1 2 3 24 24 H 0.97001 * 119.99286 * 0.02562 * 5 3 2 25 25 H 1.08996 * 109.47321 * 60.00240 * 6 5 3 26 26 H 1.08997 * 109.46893 * 299.99891 * 6 5 3 27 27 H 1.07998 * 120.00210 * 307.04371 * 7 6 5 28 28 H 1.08000 * 120.00093 * 187.56083 * 8 7 6 29 29 H 1.09001 * 109.47141 * 247.09990 * 9 8 7 30 30 H 1.09000 * 109.46995 * 7.09463 * 9 8 7 31 31 H 0.97003 * 120.00146 * 0.02562 * 10 9 8 32 32 H 0.97000 * 120.00693 * 179.97438 * 14 13 11 33 33 H 1.08996 * 117.49890 * 214.99619 * 19 2 1 34 34 H 1.09007 * 117.49754 * 0.02562 * 19 2 1 35 35 H 1.08996 * 117.50031 * 359.97159 * 20 2 1 36 36 H 1.09002 * 117.49785 * 144.99175 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6019 2.3830 0.6597 6 6 2.2340 3.7046 0.6602 7 6 1.3934 4.6631 1.4637 8 6 1.9374 5.3589 2.4311 9 6 3.4314 5.3363 2.6277 10 7 3.9404 6.7095 2.6612 11 6 5.2795 6.9394 2.8318 12 1 5.9605 6.1082 2.9413 13 6 5.7620 8.2406 2.8630 14 7 4.9322 9.2535 2.7291 15 14 7.5888 8.5541 3.0951 16 1 8.3016 7.2574 3.2200 17 1 8.1163 9.2975 1.9228 18 1 7.8009 9.3568 4.3264 19 6 2.2365 -1.1207 0.7652 20 6 2.2364 -1.1207 -0.7655 21 1 -0.3634 0.0791 -1.0245 22 1 -0.3633 -0.9269 0.4438 23 1 -0.3633 0.8477 0.5809 24 1 0.7677 2.2441 1.1349 25 1 2.3196 4.0667 -0.3643 26 1 3.2268 3.6323 1.1042 27 1 0.3425 4.7764 1.2420 28 1 1.3157 5.9524 3.0851 29 1 3.6666 4.8385 3.5684 30 1 3.8980 4.7958 1.8041 31 1 3.3288 7.4561 2.5632 32 1 5.2692 10.1628 2.7513 33 1 3.1714 -0.8746 1.2686 34 1 1.6113 -1.8583 1.2684 35 1 1.6112 -1.8582 -1.2686 36 1 3.1713 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274047729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:12 Heat of formation + Delta-G solvation = 17.829854 kcal Electronic energy + Delta-G solvation = -16203.201131 eV Core-core repulsion = 13496.064512 eV Total energy + Delta-G solvation = -2707.136619 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18553 -37.22038 -36.25578 -34.52824 -32.84496 -30.48545 -29.01258 -26.73274 -25.01920 -22.90644 -22.68702 -22.48161 -19.81180 -18.45764 -17.21958 -16.69534 -16.31471 -15.55628 -15.06055 -14.49836 -14.26371 -14.11812 -13.50818 -13.33040 -13.19851 -12.84426 -12.62589 -12.49448 -12.36348 -11.73794 -11.72157 -10.96121 -10.80875 -10.80360 -10.44060 -10.25710 -10.00136 -9.86208 -9.76712 -9.15330 -9.01940 -8.59430 -6.91634 -5.76578 -3.05808 2.25477 2.46713 3.30422 3.45021 3.50877 3.53256 3.60870 4.36215 4.54743 4.60352 4.62347 4.70840 5.03220 5.29427 5.31495 5.37059 5.39011 5.47920 5.56791 5.64935 5.69991 5.78956 5.90395 5.91944 5.97638 6.25630 6.35478 6.54530 6.59042 6.87512 7.14485 7.51934 7.71376 8.23565 8.41887 9.53363 10.09115 10.44559 11.46312 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.003992 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.944252 B = 7012.475882 C = 7480.939293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.168 4.168 3 C 0.545 3.455 4 O -0.539 6.539 5 N -0.719 5.719 6 C 0.140 3.860 7 C -0.200 4.200 8 C -0.109 4.109 9 C 0.161 3.839 10 N -0.728 5.728 11 C -0.241 4.241 12 H 0.072 0.928 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.909 3.091 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.291 1.291 19 C -0.150 4.150 20 C -0.145 4.145 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.399 0.601 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -19.410 -3.773 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.330 3.670 4 O -0.416 6.416 5 N -0.370 5.370 6 C 0.018 3.982 7 C -0.219 4.219 8 C -0.128 4.128 9 C 0.035 3.965 10 N -0.372 5.372 11 C -0.372 4.372 12 H 0.090 0.910 13 C -0.210 4.210 14 N -0.582 5.582 15 Si 0.740 3.260 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.218 1.218 19 C -0.188 4.188 20 C -0.183 4.183 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.234 0.766 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.270 -19.284 -4.179 22.723 hybrid contribution 0.234 0.631 0.361 0.764 sum -11.036 -18.653 -3.818 22.007 Atomic orbital electron populations 1.21347 0.90543 1.02567 1.02584 1.21507 0.95853 0.89742 1.10039 1.19472 0.84388 0.84739 0.78361 1.90719 1.23212 1.83835 1.43838 1.45987 1.27379 1.10048 1.53613 1.20575 0.96835 0.80258 1.00548 1.22586 0.99781 1.01089 0.98440 1.23299 0.97970 0.96390 0.95156 1.20011 0.88411 0.89507 0.98611 1.42279 1.06171 1.00731 1.88034 1.19303 0.84153 0.92031 1.41678 0.90995 1.24757 0.97932 0.95480 1.02781 1.69676 1.33281 0.97985 1.57231 0.86088 0.84877 0.77763 0.77313 1.20462 1.21776 1.21815 1.23114 1.02184 0.98302 0.95152 1.23035 1.02723 0.98136 0.94385 0.91591 0.91495 0.91868 0.76643 0.91070 0.89336 0.87059 0.86863 0.95417 0.94658 0.78161 0.93517 0.88205 0.87830 0.88031 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.79 37.16 0.36 -0.40 16 2 C -0.17 -1.64 2.61 -155.66 -0.41 -2.04 16 3 C 0.54 7.44 7.39 -10.98 -0.08 7.36 16 4 O -0.54 -9.73 16.26 5.56 0.09 -9.64 16 5 N -0.72 -8.76 5.45 -61.48 -0.33 -9.09 16 6 C 0.14 2.06 5.76 -5.20 -0.03 2.03 16 7 C -0.20 -2.76 9.63 -36.03 -0.35 -3.11 16 8 C -0.11 -1.78 9.63 -36.02 -0.35 -2.13 16 9 C 0.16 3.34 6.34 -5.19 -0.03 3.31 16 10 N -0.73 -19.01 5.59 -61.09 -0.34 -19.35 16 11 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 12 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 15 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 C -0.15 -1.28 9.88 -26.70 -0.26 -1.54 16 20 C -0.15 -1.32 9.77 -26.70 -0.26 -1.58 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.35 7.90 -51.93 -0.41 -0.06 16 23 H 0.06 0.38 6.39 -51.93 -0.33 0.05 16 24 H 0.40 3.67 6.77 -40.82 -0.28 3.39 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.51 5.31 -51.93 -0.28 1.24 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.75 5.31 -51.93 -0.28 0.48 16 31 H 0.38 10.47 7.66 -40.82 -0.31 10.16 16 32 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.64 8.05 -51.92 -0.42 0.22 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.17 7.67 -51.93 -0.40 0.78 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -33.50 305.52 -7.14 -40.64 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.20 Total: 8.67 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.65 Total: -5.68 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.05 Total: -56.40 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.50 -7.14 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274047729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.468 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds