Wall clock time and date at job start Sun Mar 29 2020 22:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 115.54582 * 2 1 4 4 O 1.21280 * 119.99674 * 214.41948 * 3 2 1 5 5 N 1.34776 * 120.00384 * 34.41982 * 3 2 1 6 6 C 1.46497 * 120.00106 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46721 * 180.02562 * 6 5 3 8 8 C 1.31001 * 119.99832 * 127.05010 * 7 6 5 9 9 C 1.50703 * 120.00136 * 7.83573 * 8 7 6 10 10 N 1.46496 * 109.47279 * 127.09459 * 9 8 7 11 11 C 1.36938 * 120.00067 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00267 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00001 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46981 * 120.00548 * 15 13 11 18 18 H 1.48503 * 109.47305 * 239.99917 * 15 13 11 19 19 C 1.52992 * 117.50219 * 145.67307 * 2 1 3 20 20 C 1.52998 * 117.49653 * 214.33483 * 2 1 3 21 21 H 1.08995 * 109.47443 * 85.58389 * 1 2 3 22 22 H 1.09001 * 109.46848 * 205.58220 * 1 2 3 23 23 H 1.08998 * 109.46973 * 325.57729 * 1 2 3 24 24 H 0.97001 * 119.99286 * 0.02562 * 5 3 2 25 25 H 1.08996 * 109.47321 * 60.00240 * 6 5 3 26 26 H 1.08997 * 109.46893 * 299.99891 * 6 5 3 27 27 H 1.07998 * 120.00210 * 307.04371 * 7 6 5 28 28 H 1.08000 * 120.00093 * 187.56083 * 8 7 6 29 29 H 1.09001 * 109.47141 * 247.09990 * 9 8 7 30 30 H 1.09000 * 109.46995 * 7.09463 * 9 8 7 31 31 H 0.97003 * 120.00146 * 0.02562 * 10 9 8 32 32 H 0.97000 * 120.00693 * 179.97438 * 14 13 11 33 33 H 1.08996 * 117.49890 * 214.99619 * 19 2 1 34 34 H 1.09007 * 117.49754 * 0.02562 * 19 2 1 35 35 H 1.08996 * 117.50031 * 359.97159 * 20 2 1 36 36 H 1.09002 * 117.49785 * 144.99175 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6019 2.3830 0.6597 6 6 2.2340 3.7046 0.6602 7 6 1.3934 4.6631 1.4637 8 6 1.9374 5.3589 2.4311 9 6 3.4314 5.3363 2.6277 10 7 3.9404 6.7095 2.6612 11 6 5.2795 6.9394 2.8318 12 1 5.9605 6.1082 2.9413 13 6 5.7620 8.2406 2.8630 14 7 4.9322 9.2535 2.7291 15 14 7.5888 8.5541 3.0951 16 1 8.3016 7.2574 3.2200 17 1 8.1163 9.2975 1.9228 18 1 7.8009 9.3568 4.3264 19 6 2.2365 -1.1207 0.7652 20 6 2.2364 -1.1207 -0.7655 21 1 -0.3634 0.0791 -1.0245 22 1 -0.3633 -0.9269 0.4438 23 1 -0.3633 0.8477 0.5809 24 1 0.7677 2.2441 1.1349 25 1 2.3196 4.0667 -0.3643 26 1 3.2268 3.6323 1.1042 27 1 0.3425 4.7764 1.2420 28 1 1.3157 5.9524 3.0851 29 1 3.6666 4.8385 3.5684 30 1 3.8980 4.7958 1.8041 31 1 3.3288 7.4561 2.5632 32 1 5.2692 10.1628 2.7513 33 1 3.1714 -0.8746 1.2686 34 1 1.6113 -1.8583 1.2684 35 1 1.6112 -1.8582 -1.2686 36 1 3.1713 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274047729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:11 Heat of formation + Delta-G solvation = -5.791935 kcal Electronic energy + Delta-G solvation = -16204.225448 eV Core-core repulsion = 13496.064512 eV Total energy + Delta-G solvation = -2708.160937 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20886 -38.31854 -37.47140 -36.14473 -34.45601 -32.38879 -29.71579 -28.12289 -26.64300 -24.43777 -23.87980 -23.38496 -20.92245 -19.87308 -18.86965 -17.85996 -17.59624 -16.79020 -16.47213 -16.00473 -15.44689 -15.22467 -15.11289 -14.97304 -14.23407 -13.98978 -13.84639 -13.48797 -13.27189 -13.19730 -12.95868 -12.75581 -12.39194 -12.15836 -11.93729 -11.69247 -11.52142 -11.06203 -10.99102 -10.89548 -10.36104 -9.95701 -9.02142 -7.99978 -5.29783 1.01649 1.44558 1.45434 1.46549 1.56993 2.27227 2.54345 2.84794 3.33564 3.65347 3.72086 3.82757 3.90963 4.01620 4.10150 4.14803 4.31594 4.56167 4.70771 4.76119 4.83249 4.87401 4.89279 4.94816 4.97298 5.05312 5.22033 5.30489 5.34700 5.43676 5.55082 5.83133 6.22938 6.52410 7.20715 7.28882 8.01943 8.27227 9.23628 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.003992 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.944252 B = 7012.475882 C = 7480.939293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.174 4.174 3 C 0.536 3.464 4 O -0.593 6.593 5 N -0.704 5.704 6 C 0.139 3.861 7 C -0.159 4.159 8 C -0.133 4.133 9 C 0.160 3.840 10 N -0.741 5.741 11 C -0.252 4.252 12 H 0.073 0.927 13 C -0.072 4.072 14 N -0.967 5.967 15 Si 0.976 3.024 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.288 1.288 19 C -0.140 4.140 20 C -0.150 4.150 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.417 0.583 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.127 0.873 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 -21.055 -3.554 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.324 3.676 4 O -0.474 6.474 5 N -0.356 5.356 6 C 0.016 3.984 7 C -0.178 4.178 8 C -0.152 4.152 9 C 0.035 3.965 10 N -0.384 5.384 11 C -0.384 4.384 12 H 0.091 0.909 13 C -0.265 4.265 14 N -0.618 5.618 15 Si 0.804 3.196 16 H -0.193 1.193 17 H -0.218 1.218 18 H -0.215 1.215 19 C -0.177 4.177 20 C -0.187 4.187 21 H 0.087 0.913 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.255 0.745 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.170 0.830 28 H 0.145 0.855 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.026 -20.976 -3.935 25.003 hybrid contribution 0.748 1.042 0.242 1.306 sum -12.278 -19.934 -3.692 23.701 Atomic orbital electron populations 1.21397 0.87694 1.04262 1.03249 1.21569 0.97670 0.87315 1.11145 1.20293 0.83773 0.86338 0.77234 1.90693 1.25717 1.84881 1.46122 1.45807 1.27743 1.08800 1.53257 1.20379 0.96220 0.81965 0.99820 1.22783 1.01183 0.98235 0.95598 1.23051 0.95318 0.99228 0.97640 1.20080 0.91665 0.86719 0.98082 1.42476 1.05338 1.02626 1.87974 1.19674 0.85605 0.92270 1.40853 0.90931 1.25598 1.02371 0.95304 1.03222 1.69818 1.35146 0.98163 1.58632 0.85046 0.79715 0.77836 0.76984 1.19285 1.21785 1.21458 1.23223 1.01724 0.97991 0.94782 1.23101 1.02073 0.98523 0.94992 0.91340 0.89130 0.90992 0.74472 0.92123 0.92178 0.83004 0.85514 0.95734 0.95217 0.79171 0.93770 0.90069 0.84527 0.85163 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.79 71.98 0.70 -0.38 16 2 C -0.17 -3.06 2.61 -52.93 -0.14 -3.20 16 3 C 0.54 14.45 7.39 87.66 0.65 15.10 16 4 O -0.59 -22.24 16.26 -3.03 -0.05 -22.29 16 5 N -0.70 -16.20 5.45 -466.80 -2.54 -18.74 16 6 C 0.14 4.05 5.76 85.63 0.49 4.54 16 7 C -0.16 -4.04 9.63 25.65 0.25 -3.80 16 8 C -0.13 -4.22 9.63 25.65 0.25 -3.98 16 9 C 0.16 6.73 6.34 85.63 0.54 7.28 16 10 N -0.74 -39.43 5.59 -347.18 -1.94 -41.37 16 11 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 12 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 13 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 14 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 15 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 C -0.14 -2.10 9.88 30.62 0.30 -1.80 16 20 C -0.15 -2.51 9.77 30.62 0.30 -2.21 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.09 0.52 7.90 -2.39 -0.02 0.50 16 23 H 0.07 0.58 6.39 -2.39 -0.02 0.57 16 24 H 0.42 6.47 6.77 -92.71 -0.63 5.85 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 2.12 5.31 -2.39 -0.01 2.11 16 27 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.03 1.31 5.31 -2.39 -0.01 1.29 16 31 H 0.38 20.91 7.66 -92.71 -0.71 20.20 16 32 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.14 1.16 8.05 -2.38 -0.02 1.14 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 Total: -1.00 -74.57 305.52 2.18 -72.39 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.25 Total: 26.81 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.65 Total: -6.18 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -4.20 Total: -120.12 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -74.57 2.18 -72.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274047729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.600 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds