Wall clock time and date at job start Sun Mar 29 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 119.99892 * 2 1 4 4 C 1.53010 * 109.46923 * 125.00379 * 3 2 1 5 5 C 1.50695 * 109.46923 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00620 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99862 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00192 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88788 * 328.88433 * 8 7 5 10 10 C 1.55155 * 111.00351 * 204.99691 * 8 7 5 11 11 C 1.54325 * 102.94415 * 206.42168 * 10 8 7 12 12 N 1.47026 * 107.26985 * 22.19811 * 11 10 8 13 13 C 1.36936 * 125.65021 * 181.02200 * 12 11 10 14 14 H 1.07994 * 119.99672 * 185.18209 * 13 12 11 15 15 C 1.38811 * 119.99637 * 4.90142 * 13 12 11 16 16 N 1.31613 * 120.00320 * 353.26787 * 15 13 12 17 17 Si 1.86804 * 119.99642 * 173.26875 * 15 13 12 18 18 H 1.48498 * 109.46825 * 94.98907 * 17 15 13 19 19 H 1.48493 * 109.47062 * 214.98403 * 17 15 13 20 20 H 1.48499 * 109.47097 * 334.98688 * 17 15 13 21 21 C 1.47432 * 108.70028 * 1.28278 * 12 11 10 22 22 H 1.07994 * 120.00300 * 359.97438 * 1 2 3 23 23 H 1.08006 * 119.99873 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99804 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47239 * 5.01139 * 3 2 1 26 26 H 1.08999 * 109.47452 * 245.00020 * 3 2 1 27 27 H 1.09001 * 109.46925 * 59.99954 * 4 3 2 28 28 H 1.08999 * 109.46763 * 300.00062 * 4 3 2 29 29 H 0.97001 * 120.00069 * 0.02562 * 7 5 4 30 30 H 1.09002 * 110.71660 * 88.06573 * 10 8 7 31 31 H 1.08999 * 110.72483 * 324.79266 * 10 8 7 32 32 H 1.08995 * 109.88716 * 262.78150 * 11 10 8 33 33 H 1.08993 * 109.88097 * 141.61136 * 11 10 8 34 34 H 0.96996 * 120.00254 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36186 * 94.48413 * 21 12 11 36 36 H 1.08994 * 110.36468 * 216.80132 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7881 2.6383 1.1820 6 8 3.5690 3.4651 0.3223 7 7 4.7052 2.8870 2.1379 8 6 5.4368 4.1562 2.1386 9 1 5.5706 4.5282 1.1229 10 6 6.8017 4.0108 2.8621 11 6 7.0818 5.4435 3.3628 12 7 5.7898 6.1417 3.4331 13 6 5.6062 7.4442 3.8139 14 1 4.6071 7.8419 3.9134 15 6 6.7042 8.2514 4.0778 16 7 7.9139 7.7332 4.0917 17 14 6.4647 10.0734 4.4132 18 1 6.3910 10.3014 5.8787 19 1 7.6088 10.8348 3.8508 20 1 5.2039 10.5324 3.7768 21 6 4.7241 5.2054 3.0316 22 1 -0.5400 0.9352 0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0898 26 1 2.6212 1.4026 -0.9313 27 1 3.7400 0.5064 1.0920 28 1 2.4773 1.2354 2.1130 29 1 4.8808 2.2256 2.8254 30 1 7.5751 3.6878 2.1652 31 1 6.7223 3.3181 3.6999 32 1 7.7433 5.9572 2.6653 33 1 7.5382 5.4078 4.3519 34 1 8.6811 8.2972 4.2765 35 1 4.2889 4.7273 3.9092 36 1 3.9550 5.7276 2.4626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316974011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:02 Heat of formation + Delta-G solvation = -2.280535 kcal Electronic energy + Delta-G solvation = -16639.700538 eV Core-core repulsion = 13931.691867 eV Total energy + Delta-G solvation = -2708.008671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65251 -37.31262 -35.46665 -33.96984 -31.96352 -30.74725 -29.11415 -27.14644 -24.88879 -23.84627 -20.53037 -20.32252 -19.94693 -19.81235 -17.13641 -16.66472 -15.87554 -15.75774 -14.81064 -14.61514 -14.25609 -13.95464 -13.51396 -12.84167 -12.69093 -12.42231 -12.32665 -12.08277 -11.78222 -11.20813 -11.18075 -10.96788 -10.92378 -10.73002 -10.34261 -10.09522 -9.89073 -9.76409 -9.67748 -9.42497 -8.69773 -8.55899 -6.82912 -5.71714 -3.03977 2.05958 2.83659 3.39581 3.43383 3.47811 3.50546 4.51973 4.66552 4.77127 4.98569 5.12017 5.17801 5.33261 5.44138 5.47139 5.63027 5.65831 5.76595 5.79946 5.84264 6.03633 6.20983 6.34526 6.42165 6.42877 6.57260 6.61945 6.71595 7.00240 7.52844 7.60301 7.74291 7.83312 8.25542 8.46026 9.22448 9.82715 10.48143 11.40604 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050458 B = 0.004335 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.778927 B = 6457.233424 C = 6826.888107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.542 6.542 7 N -0.719 5.719 8 C 0.126 3.874 9 H 0.096 0.904 10 C -0.149 4.149 11 C 0.178 3.822 12 N -0.604 5.604 13 C -0.228 4.228 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.911 3.089 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.129 3.871 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.397 0.603 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -16.215 -4.462 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.118 4.118 4 C -0.176 4.176 5 C 0.294 3.706 6 O -0.419 6.419 7 N -0.369 5.369 8 C 0.021 3.979 9 H 0.114 0.886 10 C -0.188 4.188 11 C 0.053 3.947 12 N -0.331 5.331 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.002 3.998 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.126 0.874 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.115 -15.410 -5.032 18.128 hybrid contribution 0.071 0.561 0.660 0.869 sum -8.043 -14.849 -4.372 17.445 Atomic orbital electron populations 1.23882 0.96023 1.01847 1.01480 1.22997 0.96088 0.98408 0.99629 1.20510 0.97896 0.95270 0.98129 1.21619 0.98989 0.95874 1.01077 1.20678 0.79804 0.88810 0.81316 1.90712 1.65350 1.48286 1.37576 1.46059 1.40728 1.19937 1.30170 1.22349 0.91732 0.83054 1.00796 0.88570 1.23175 0.95458 1.01102 0.99096 1.21154 0.88302 0.85441 0.99788 1.44403 1.01301 1.08720 1.78707 1.19071 0.92936 0.84759 1.38868 0.90380 1.24817 0.95268 0.98330 1.01954 1.69956 0.97558 1.33964 1.55449 0.86105 0.77108 0.84938 0.77685 1.21689 1.21594 1.20566 1.21866 0.92299 0.90927 0.94723 0.88477 0.88625 0.87413 0.90642 0.90196 0.89000 0.88931 0.76928 0.91669 0.92084 0.93109 0.93795 0.93737 0.96374 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.15 -1.28 9.52 -36.03 -0.34 -1.63 16 3 C -0.08 -0.83 4.95 -27.88 -0.14 -0.96 16 4 C -0.14 -1.32 5.68 -27.88 -0.16 -1.48 16 5 C 0.51 7.33 7.83 -10.99 -0.09 7.25 16 6 O -0.54 -10.26 15.62 5.56 0.09 -10.18 16 7 N -0.72 -10.14 5.19 -51.62 -0.27 -10.40 16 8 C 0.13 2.31 3.44 -65.67 -0.23 2.09 16 9 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 10 C -0.15 -2.70 6.59 -24.90 -0.16 -2.86 16 11 C 0.18 4.32 5.38 -3.06 -0.02 4.31 16 12 N -0.60 -15.87 3.39 -169.93 -0.58 -16.44 16 13 C -0.23 -6.54 10.27 -15.06 -0.15 -6.69 16 14 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 15 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 16 N -0.92 -27.28 10.36 55.49 0.57 -26.71 16 17 Si 0.91 22.44 29.56 -169.99 -5.02 17.42 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.13 2.83 6.93 -2.41 -0.02 2.81 16 22 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 23 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 24 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 25 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 26 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.40 4.30 8.57 -40.82 -0.35 3.95 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 32 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 33 H 0.04 1.16 7.60 -51.93 -0.39 0.77 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -32.74 301.51 -7.32 -40.06 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.67 Total: 0.35 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.98 Total: 1.36 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.27 Total: -53.56 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.74 -7.32 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316974011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.783 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds