Wall clock time and date at job start Sun Mar 29 2020 22:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 119.99892 * 2 1 4 4 C 1.53010 * 109.46923 * 125.00379 * 3 2 1 5 5 C 1.50695 * 109.46923 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00620 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99862 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00192 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88788 * 328.88433 * 8 7 5 10 10 C 1.55155 * 111.00351 * 204.99691 * 8 7 5 11 11 C 1.54325 * 102.94415 * 206.42168 * 10 8 7 12 12 N 1.47026 * 107.26985 * 22.19811 * 11 10 8 13 13 C 1.36936 * 125.65021 * 181.02200 * 12 11 10 14 14 H 1.07994 * 119.99672 * 185.18209 * 13 12 11 15 15 C 1.38811 * 119.99637 * 4.90142 * 13 12 11 16 16 N 1.31613 * 120.00320 * 353.26787 * 15 13 12 17 17 Si 1.86804 * 119.99642 * 173.26875 * 15 13 12 18 18 H 1.48498 * 109.46825 * 94.98907 * 17 15 13 19 19 H 1.48493 * 109.47062 * 214.98403 * 17 15 13 20 20 H 1.48499 * 109.47097 * 334.98688 * 17 15 13 21 21 C 1.47432 * 108.70028 * 1.28278 * 12 11 10 22 22 H 1.07994 * 120.00300 * 359.97438 * 1 2 3 23 23 H 1.08006 * 119.99873 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99804 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47239 * 5.01139 * 3 2 1 26 26 H 1.08999 * 109.47452 * 245.00020 * 3 2 1 27 27 H 1.09001 * 109.46925 * 59.99954 * 4 3 2 28 28 H 1.08999 * 109.46763 * 300.00062 * 4 3 2 29 29 H 0.97001 * 120.00069 * 0.02562 * 7 5 4 30 30 H 1.09002 * 110.71660 * 88.06573 * 10 8 7 31 31 H 1.08999 * 110.72483 * 324.79266 * 10 8 7 32 32 H 1.08995 * 109.88716 * 262.78150 * 11 10 8 33 33 H 1.08993 * 109.88097 * 141.61136 * 11 10 8 34 34 H 0.96996 * 120.00254 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36186 * 94.48413 * 21 12 11 36 36 H 1.08994 * 110.36468 * 216.80132 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7881 2.6383 1.1820 6 8 3.5690 3.4651 0.3223 7 7 4.7052 2.8870 2.1379 8 6 5.4368 4.1562 2.1386 9 1 5.5706 4.5282 1.1229 10 6 6.8017 4.0108 2.8621 11 6 7.0818 5.4435 3.3628 12 7 5.7898 6.1417 3.4331 13 6 5.6062 7.4442 3.8139 14 1 4.6071 7.8419 3.9134 15 6 6.7042 8.2514 4.0778 16 7 7.9139 7.7332 4.0917 17 14 6.4647 10.0734 4.4132 18 1 6.3910 10.3014 5.8787 19 1 7.6088 10.8348 3.8508 20 1 5.2039 10.5324 3.7768 21 6 4.7241 5.2054 3.0316 22 1 -0.5400 0.9352 0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0898 26 1 2.6212 1.4026 -0.9313 27 1 3.7400 0.5064 1.0920 28 1 2.4773 1.2354 2.1130 29 1 4.8808 2.2256 2.8254 30 1 7.5751 3.6878 2.1652 31 1 6.7223 3.3181 3.6999 32 1 7.7433 5.9572 2.6653 33 1 7.5382 5.4078 4.3519 34 1 8.6811 8.2972 4.2765 35 1 4.2889 4.7273 3.9092 36 1 3.9550 5.7276 2.4626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316974011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:01 Heat of formation + Delta-G solvation = -24.598019 kcal Electronic energy + Delta-G solvation = -16640.668297 eV Core-core repulsion = 13931.691867 eV Total energy + Delta-G solvation = -2708.976430 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92097 -38.96577 -36.27518 -35.56857 -33.78412 -31.73414 -30.87690 -28.82662 -26.62351 -25.07537 -22.19643 -21.85606 -21.24327 -20.61329 -19.01641 -17.94957 -17.24576 -16.75010 -16.67085 -15.95299 -15.65497 -15.34110 -14.79817 -14.20743 -14.18744 -13.99546 -13.69156 -13.44240 -13.04198 -12.97485 -12.76503 -12.37644 -12.13792 -12.05542 -11.95869 -11.86580 -11.84358 -11.58395 -10.86561 -10.71166 -10.18857 -10.04872 -8.93911 -7.89720 -5.24727 1.42963 1.44261 1.46457 1.56060 1.69699 2.22483 2.49651 3.29269 3.66104 3.70232 3.92238 4.01936 4.05176 4.20550 4.24152 4.44628 4.50861 4.59025 4.72058 4.75555 4.85924 4.97255 4.98720 5.10289 5.13311 5.26842 5.40370 5.56710 5.63180 5.71616 5.79177 5.95709 6.16585 6.65050 7.06955 7.34913 7.72573 8.36354 9.20864 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050458 B = 0.004335 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.778927 B = 6457.233424 C = 6826.888107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.122 4.122 5 C 0.504 3.496 6 O -0.593 6.593 7 N -0.704 5.704 8 C 0.144 3.856 9 H 0.071 0.929 10 C -0.127 4.127 11 C 0.182 3.818 12 N -0.627 5.627 13 C -0.251 4.251 14 H 0.077 0.923 15 C -0.061 4.061 16 N -0.947 5.947 17 Si 0.979 3.021 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.272 1.272 21 C 0.128 3.872 22 H 0.089 0.911 23 H 0.113 0.887 24 H 0.130 0.870 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.418 0.582 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.249 0.751 35 H 0.033 0.967 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 -18.423 -4.044 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.172 4.172 3 C -0.119 4.119 4 C -0.161 4.161 5 C 0.293 3.707 6 O -0.473 6.473 7 N -0.356 5.356 8 C 0.037 3.963 9 H 0.089 0.911 10 C -0.166 4.166 11 C 0.057 3.943 12 N -0.354 5.354 13 C -0.380 4.380 14 H 0.095 0.905 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.807 3.193 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.197 1.197 21 C 0.001 3.999 22 H 0.107 0.893 23 H 0.131 0.869 24 H 0.148 0.852 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.256 0.744 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.857 -17.677 -4.594 20.299 hybrid contribution 0.234 1.245 0.514 1.367 sum -8.623 -16.433 -4.080 19.001 Atomic orbital electron populations 1.24045 0.96180 1.02377 1.00871 1.22998 0.96105 0.98044 1.00093 1.20470 0.97691 0.95823 0.97926 1.21642 0.99065 0.93662 1.01781 1.21600 0.79173 0.89880 0.80070 1.90703 1.66744 1.50338 1.39547 1.45830 1.40203 1.18617 1.30949 1.21805 0.91813 0.84102 0.98565 0.91054 1.22985 0.95662 0.97478 1.00435 1.20960 0.87080 0.88729 0.97525 1.44698 1.03118 1.08885 1.78729 1.19422 0.93117 0.86419 1.38993 0.90501 1.25663 0.95057 1.02570 1.02177 1.70162 0.98064 1.35126 1.56161 0.85065 0.77072 0.79556 0.77652 1.20943 1.21683 1.19706 1.21989 0.91274 0.91138 0.95487 0.89304 0.86867 0.85220 0.92866 0.91579 0.85516 0.86597 0.74383 0.89375 0.88836 0.96792 0.96618 0.94144 0.94924 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 14.32 67.78 0.97 -1.78 16 2 C -0.15 -2.17 9.52 25.64 0.24 -1.93 16 3 C -0.08 -1.54 4.95 29.85 0.15 -1.40 16 4 C -0.12 -1.97 5.68 29.85 0.17 -1.80 16 5 C 0.50 13.64 7.83 87.66 0.69 14.33 16 6 O -0.59 -22.50 15.62 -3.03 -0.05 -22.55 16 7 N -0.70 -18.03 5.19 -435.62 -2.26 -20.29 16 8 C 0.14 5.15 3.44 46.46 0.16 5.31 16 9 H 0.07 2.96 7.54 -2.39 -0.02 2.94 16 10 C -0.13 -4.36 6.59 31.78 0.21 -4.15 16 11 C 0.18 9.00 5.38 86.73 0.47 9.46 16 12 N -0.63 -33.61 3.39 -691.55 -2.35 -35.96 16 13 C -0.25 -14.69 10.27 84.03 0.86 -13.83 16 14 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 15 C -0.06 -3.58 5.48 84.86 0.46 -3.11 16 16 N -0.95 -57.52 10.36 21.65 0.22 -57.29 16 17 Si 0.98 46.81 29.56 68.60 2.03 48.84 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.13 5.60 6.93 86.93 0.60 6.21 16 22 H 0.09 1.36 7.84 -2.91 -0.02 1.34 16 23 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 24 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 25 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 26 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 27 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.42 7.29 8.57 -92.71 -0.79 6.50 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.09 2.64 8.00 -2.39 -0.02 2.62 16 32 H 0.01 0.77 7.30 -2.39 -0.02 0.76 16 33 H 0.02 0.85 7.60 -2.39 -0.02 0.83 16 34 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -74.27 301.51 2.84 -71.44 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.26 Total: 8.51 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.98 Total: 7.30 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.39 Total: -113.54 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.27 2.84 -71.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316974011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.839 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds