Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99788 * 2 1 4 4 C 1.53004 * 109.46957 * 124.99662 * 3 2 1 5 5 C 1.50705 * 109.46731 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00490 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99677 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46605 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47103 * 119.99755 * 16 14 12 19 19 H 1.48496 * 109.47077 * 240.00020 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08002 * 120.00108 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00055 * 179.97438 * 1 2 3 23 23 H 1.08002 * 120.00108 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47456 * 4.99924 * 3 2 1 25 25 H 1.08998 * 109.47280 * 244.99196 * 3 2 1 26 26 H 1.09002 * 109.47260 * 60.00093 * 4 3 2 27 27 H 1.08997 * 109.47266 * 299.99800 * 4 3 2 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5703 3.4644 0.3210 7 7 4.7052 2.8871 2.1377 8 6 5.4377 4.1559 2.1377 9 6 6.4092 4.1839 3.3193 10 6 7.7723 3.5354 3.0165 11 7 8.2069 4.8855 2.6008 12 6 9.1737 5.3646 1.7575 13 1 9.2909 6.4294 1.6200 14 6 10.0030 4.4817 1.0796 15 7 9.8598 3.1841 1.2470 16 14 11.3223 5.1352 -0.0701 17 1 11.2764 6.6194 -0.0832 18 1 12.6566 4.6848 0.4008 19 1 11.0820 4.6209 -1.4423 20 6 7.1796 5.5096 3.4571 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1317 0.0895 25 1 2.6213 1.4026 -0.9313 26 1 3.7399 0.5066 1.0922 27 1 2.4771 1.2357 2.1131 28 1 4.8797 2.2264 2.8261 29 1 4.7328 4.9825 2.2268 30 1 5.9959 4.2532 1.2065 31 1 5.9568 3.8405 4.2496 32 1 8.2870 3.1612 3.9015 33 1 7.7431 2.8117 2.2020 34 1 10.4395 2.5671 0.7735 35 1 6.6782 6.3593 2.9936 36 1 7.5199 5.7165 4.4717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318108529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = 24.280279 kcal Electronic energy + Delta-G solvation = -16528.135314 eV Core-core repulsion = 13821.278407 eV Total energy + Delta-G solvation = -2706.856908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54431 -38.02351 -35.48426 -34.13747 -32.14400 -30.87319 -28.49429 -26.13522 -24.80364 -23.93800 -22.17084 -20.15934 -19.90533 -18.61261 -16.78541 -16.60436 -15.86217 -15.78491 -14.98842 -14.77632 -14.30740 -13.91251 -13.62555 -13.10577 -12.84952 -12.53352 -12.36577 -12.05085 -11.45171 -11.18080 -11.13118 -11.05397 -10.99327 -10.69937 -10.46820 -9.91871 -9.74236 -9.65906 -9.46493 -9.35392 -8.78296 -8.63973 -6.85607 -5.74618 -3.06348 2.10555 2.92141 3.41145 3.46586 3.48949 3.50810 4.48352 4.71905 4.84641 5.03918 5.18426 5.20507 5.27333 5.36781 5.40201 5.54986 5.65206 5.69219 5.88125 6.00439 6.09305 6.17391 6.34552 6.46768 6.53509 6.61937 6.64964 6.70857 6.84502 7.20345 7.32701 7.58332 7.82563 8.00578 8.52410 9.07188 9.73632 10.62099 11.42639 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031219 B = 0.004695 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.688697 B = 5962.295341 C = 6433.825729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.081 4.081 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.547 6.547 7 N -0.723 5.723 8 C 0.148 3.852 9 C -0.155 4.155 10 C 0.165 3.835 11 N -0.611 5.611 12 C -0.221 4.221 13 H 0.080 0.920 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.910 3.090 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.127 3.873 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.398 0.602 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.045 0.955 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.907 -6.128 3.228 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.118 4.118 4 C -0.176 4.176 5 C 0.294 3.706 6 O -0.425 6.425 7 N -0.374 5.374 8 C 0.025 3.975 9 C -0.175 4.175 10 C 0.040 3.960 11 N -0.338 5.338 12 C -0.349 4.349 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.000 4.000 21 H 0.114 0.886 22 H 0.114 0.886 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.232 0.768 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.782 -5.520 2.375 15.957 hybrid contribution 1.066 -0.101 -0.092 1.075 sum -13.716 -5.621 2.283 14.998 Atomic orbital electron populations 1.23854 0.95991 1.01746 1.01911 1.23024 0.96075 0.98531 0.99233 1.20510 0.97821 0.95124 0.98357 1.21612 0.99002 0.96134 1.00821 1.20628 0.79941 0.88832 0.81235 1.90695 1.66188 1.48387 1.37184 1.46057 1.40408 1.20662 1.30259 1.21059 0.92690 0.84040 0.99755 1.23450 0.96931 1.00769 0.96351 1.22352 0.86291 0.90115 0.97231 1.46055 1.38265 1.02168 1.47318 1.19082 1.07945 0.91887 1.15991 0.90249 1.24759 0.99719 0.95383 1.00614 1.69816 1.40924 1.00464 1.45711 0.86065 0.81434 0.77931 0.80475 1.20462 1.21813 1.21707 1.22523 0.89092 0.94052 0.94332 0.88582 0.88648 0.87318 0.90804 0.90080 0.88767 0.89075 0.76810 0.92413 0.90077 0.91604 0.95607 0.90694 0.93799 0.93663 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.02 0.42 -1.25 16 2 C -0.15 -1.37 9.52 -36.02 -0.34 -1.71 16 3 C -0.08 -0.89 4.95 -27.88 -0.14 -1.03 16 4 C -0.14 -1.45 5.68 -27.88 -0.16 -1.61 16 5 C 0.51 7.77 7.83 -10.98 -0.09 7.69 16 6 O -0.55 -10.74 15.98 5.56 0.09 -10.65 16 7 N -0.72 -10.71 5.56 -60.29 -0.33 -11.04 16 8 C 0.15 2.65 5.42 -4.04 -0.02 2.63 16 9 C -0.16 -2.77 3.99 -89.69 -0.36 -3.13 16 10 C 0.17 3.78 7.03 -2.84 -0.02 3.76 16 11 N -0.61 -15.63 3.59 -177.69 -0.64 -16.27 16 12 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 13 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 15 N -0.92 -27.47 11.39 55.49 0.63 -26.83 16 16 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 C 0.13 2.55 8.51 -2.96 -0.03 2.52 16 21 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 22 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 23 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 24 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 25 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.40 4.71 8.47 -40.82 -0.35 4.37 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.82 7.98 -51.93 -0.41 1.41 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.90 7.12 -51.93 -0.37 1.53 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -33.17 307.30 -7.35 -40.52 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.71 Total: 1.04 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.99 Total: 1.09 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.34 Total: -54.14 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.17 -7.35 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318108529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.796 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds