Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99788 * 2 1 4 4 C 1.53004 * 109.46957 * 124.99662 * 3 2 1 5 5 C 1.50705 * 109.46731 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00490 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99677 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46605 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47103 * 119.99755 * 16 14 12 19 19 H 1.48496 * 109.47077 * 240.00020 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08002 * 120.00108 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00055 * 179.97438 * 1 2 3 23 23 H 1.08002 * 120.00108 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47456 * 4.99924 * 3 2 1 25 25 H 1.08998 * 109.47280 * 244.99196 * 3 2 1 26 26 H 1.09002 * 109.47260 * 60.00093 * 4 3 2 27 27 H 1.08997 * 109.47266 * 299.99800 * 4 3 2 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5703 3.4644 0.3210 7 7 4.7052 2.8871 2.1377 8 6 5.4377 4.1559 2.1377 9 6 6.4092 4.1839 3.3193 10 6 7.7723 3.5354 3.0165 11 7 8.2069 4.8855 2.6008 12 6 9.1737 5.3646 1.7575 13 1 9.2909 6.4294 1.6200 14 6 10.0030 4.4817 1.0796 15 7 9.8598 3.1841 1.2470 16 14 11.3223 5.1352 -0.0701 17 1 11.2764 6.6194 -0.0832 18 1 12.6566 4.6848 0.4008 19 1 11.0820 4.6209 -1.4423 20 6 7.1796 5.5096 3.4571 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1317 0.0895 25 1 2.6213 1.4026 -0.9313 26 1 3.7399 0.5066 1.0922 27 1 2.4771 1.2357 2.1131 28 1 4.8797 2.2264 2.8261 29 1 4.7328 4.9825 2.2268 30 1 5.9959 4.2532 1.2065 31 1 5.9568 3.8405 4.2496 32 1 8.2870 3.1612 3.9015 33 1 7.7431 2.8117 2.2020 34 1 10.4395 2.5671 0.7735 35 1 6.6782 6.3593 2.9936 36 1 7.5199 5.7165 4.4717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318108529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = 1.554789 kcal Electronic energy + Delta-G solvation = -16529.120765 eV Core-core repulsion = 13821.278407 eV Total energy + Delta-G solvation = -2707.842359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86751 -39.66138 -36.32835 -35.58173 -34.16141 -31.82308 -30.21815 -27.76695 -26.52974 -25.13923 -23.88805 -21.43994 -20.62374 -20.20745 -18.74145 -17.80265 -17.21115 -17.00548 -16.76292 -15.96711 -15.70593 -15.55068 -14.93360 -14.52681 -14.33652 -13.95646 -13.44115 -13.37595 -13.00257 -12.92525 -12.84142 -12.50520 -12.23473 -11.97503 -11.86713 -11.82074 -11.48139 -11.29585 -10.93815 -10.80703 -10.18826 -10.00908 -8.88801 -7.90590 -5.21865 1.42701 1.42954 1.44360 1.53928 1.70927 2.31174 2.47064 3.30838 3.45005 3.70075 3.84051 4.00304 4.02361 4.21694 4.42348 4.49773 4.53081 4.63198 4.73745 4.79511 4.90853 4.96640 5.02300 5.11276 5.11761 5.24917 5.26631 5.47986 5.57184 5.65825 5.78821 5.94367 5.97038 6.65356 6.94020 7.34371 7.62205 8.58072 9.26348 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031219 B = 0.004695 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.688697 B = 5962.295341 C = 6433.825729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C -0.080 4.080 4 C -0.124 4.124 5 C 0.501 3.499 6 O -0.597 6.597 7 N -0.714 5.714 8 C 0.158 3.842 9 C -0.119 4.119 10 C 0.162 3.838 11 N -0.645 5.645 12 C -0.232 4.232 13 H 0.079 0.921 14 C -0.068 4.068 15 N -0.951 5.951 16 Si 0.973 3.027 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.295 1.295 20 C 0.124 3.876 21 H 0.093 0.907 22 H 0.113 0.887 23 H 0.124 0.876 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.416 0.584 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.116 0.884 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 -6.699 4.604 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.176 4.176 3 C -0.118 4.118 4 C -0.163 4.163 5 C 0.290 3.710 6 O -0.478 6.478 7 N -0.365 5.365 8 C 0.033 3.967 9 C -0.138 4.138 10 C 0.037 3.963 11 N -0.373 5.373 12 C -0.361 4.361 13 H 0.097 0.903 14 C -0.261 4.261 15 N -0.601 5.601 16 Si 0.802 3.198 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.222 1.222 20 C -0.001 4.001 21 H 0.112 0.888 22 H 0.132 0.868 23 H 0.142 0.858 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.141 0.859 28 H 0.253 0.747 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.133 0.867 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.083 -6.094 3.801 17.614 hybrid contribution 1.395 0.112 -0.500 1.486 sum -14.688 -5.982 3.301 16.199 Atomic orbital electron populations 1.24041 0.95870 1.02553 1.00429 1.22975 0.96281 0.97888 1.00503 1.20455 0.97641 0.96074 0.97594 1.21640 0.98984 0.93561 1.02132 1.21530 0.79545 0.89864 0.80090 1.90675 1.67709 1.50391 1.39037 1.45938 1.39730 1.20036 1.30843 1.20721 0.92579 0.86006 0.97345 1.23143 0.94499 0.98164 0.98013 1.22305 0.89348 0.88863 0.95832 1.46458 1.38484 1.04246 1.48074 1.19443 1.08206 0.92090 1.16317 0.90271 1.25555 1.02169 0.95758 1.02636 1.69987 1.41809 1.01375 1.46902 0.85080 0.78715 0.77958 0.78050 1.19112 1.21704 1.22226 1.22774 0.87754 0.95224 0.94390 0.88816 0.86847 0.85792 0.92086 0.92336 0.86748 0.85860 0.74702 0.91593 0.95390 0.86661 0.95832 0.94041 0.94446 0.92967 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 67.79 0.97 -1.83 16 2 C -0.16 -2.56 9.52 25.65 0.24 -2.32 16 3 C -0.08 -1.70 4.95 29.85 0.15 -1.55 16 4 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16 5 C 0.50 14.98 7.83 87.66 0.69 15.67 16 6 O -0.60 -23.93 15.98 -3.01 -0.05 -23.98 16 7 N -0.71 -20.10 5.56 -463.05 -2.57 -22.67 16 8 C 0.16 5.57 5.42 86.38 0.47 6.04 16 9 C -0.12 -4.00 3.99 -10.13 -0.04 -4.04 16 10 C 0.16 7.37 7.03 86.44 0.61 7.98 16 11 N -0.65 -33.07 3.59 -716.10 -2.57 -35.64 16 12 C -0.23 -13.33 10.70 84.03 0.90 -12.43 16 13 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 14 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 15 N -0.95 -58.16 11.39 21.65 0.25 -57.92 16 16 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 19 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 20 C 0.12 4.76 8.51 86.49 0.74 5.49 16 21 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 22 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16 23 H 0.12 1.63 8.06 -2.91 -0.02 1.60 16 24 H 0.06 1.43 7.75 -2.39 -0.02 1.41 16 25 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 26 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.42 8.70 8.47 -92.71 -0.79 7.91 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.03 1.29 7.98 -2.39 -0.02 1.27 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 2.16 7.12 -2.39 -0.02 2.14 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.65 307.30 2.70 -71.95 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.26 Total: 11.80 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.36 Total: 7.28 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.89 Total: -116.23 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -74.65 2.70 -71.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318108529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.501 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds