Wall clock time and date at job start Sun Mar 29 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 115.54974 * 2 1 4 4 C 1.34768 * 119.99963 * 62.94986 * 3 2 1 5 5 O 1.21583 * 120.00453 * 5.80268 * 4 3 2 6 6 N 1.34780 * 119.99701 * 185.80812 * 4 3 2 7 7 C 1.46509 * 120.00084 * 185.17474 * 6 4 3 8 8 C 1.52994 * 109.47296 * 184.59681 * 7 6 4 9 9 C 1.50704 * 115.55023 * 299.41554 * 8 7 6 10 10 H 1.08001 * 119.99789 * 120.00320 * 9 8 7 11 11 C 1.37874 * 119.99701 * 299.72685 * 9 8 7 12 12 N 1.31518 * 119.99739 * 172.50919 * 11 9 8 13 13 Si 1.86798 * 120.00363 * 352.51178 * 11 9 8 14 14 H 1.48499 * 109.47181 * 94.08983 * 13 11 9 15 15 H 1.48503 * 109.47331 * 214.09319 * 13 11 9 16 16 H 1.48507 * 109.46925 * 334.09098 * 13 11 9 17 17 C 1.52999 * 117.49670 * 85.07958 * 8 7 6 18 18 C 1.53003 * 117.49939 * 153.74090 * 8 7 6 19 19 C 1.53006 * 117.49916 * 145.66581 * 2 1 3 20 20 C 1.52996 * 117.50060 * 214.32582 * 2 1 3 21 21 H 1.08998 * 109.47223 * 65.62108 * 1 2 3 22 22 H 1.08998 * 109.47229 * 185.62651 * 1 2 3 23 23 H 1.09001 * 109.47210 * 305.62265 * 1 2 3 24 24 H 0.97004 * 119.99404 * 242.94759 * 3 2 1 25 25 H 0.97000 * 120.00600 * 5.17380 * 6 4 3 26 26 H 1.09004 * 109.46775 * 64.59694 * 7 6 4 27 27 H 1.08995 * 109.46980 * 304.59878 * 7 6 4 28 28 H 0.97005 * 119.99836 * 180.02562 * 12 11 9 29 29 H 1.09000 * 117.50244 * 214.99865 * 17 8 7 30 30 H 1.08997 * 117.49910 * 0.03128 * 17 8 7 31 31 H 1.09002 * 117.49304 * 359.97438 * 18 8 7 32 32 H 1.09001 * 117.49702 * 144.97503 * 18 8 7 33 33 H 1.09000 * 117.49846 * 215.00332 * 19 2 1 34 34 H 1.08997 * 117.49615 * 0.02727 * 19 2 1 35 35 H 1.08997 * 117.50025 * 359.97438 * 20 2 1 36 36 H 1.09001 * 117.50168 * 145.00036 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.1618 1.3218 0.0000 4 6 1.9735 2.1586 1.0395 5 8 1.3680 1.7796 2.0233 6 7 2.4565 3.4159 0.9884 7 6 2.3520 4.2890 2.1602 8 6 2.8671 5.6848 1.8038 9 6 4.3071 5.7538 1.3647 10 1 4.5548 6.1294 0.3829 11 6 5.3085 5.3425 2.2185 12 7 6.5485 5.2627 1.7874 13 14 4.9042 4.8986 3.9873 14 1 4.6752 3.4350 4.0904 15 1 6.0371 5.2855 4.8662 16 1 3.6789 5.6225 4.4117 17 6 1.8819 6.6557 1.1498 18 6 2.3148 6.8670 2.6029 19 6 2.2364 -1.1207 0.7655 20 6 2.2364 -1.1207 -0.7653 21 1 -0.3633 0.4242 -0.9360 22 1 -0.3633 -1.0227 0.1008 23 1 -0.3634 0.5986 0.8354 24 1 2.7157 1.5945 -0.7482 25 1 2.8733 3.7428 0.1758 26 1 2.9495 3.8780 2.9739 27 1 1.3097 4.3550 2.4723 28 1 7.2530 4.9730 2.3880 29 1 2.2752 7.3444 0.4021 30 1 0.8667 6.3001 0.9740 31 1 1.5841 6.6502 3.3821 32 1 2.9931 7.6944 2.8113 33 1 3.1713 -0.8746 1.2690 34 1 1.6112 -1.8582 1.2687 35 1 1.6112 -1.8584 -1.2684 36 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321572057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:30 Heat of formation + Delta-G solvation = 18.286615 kcal Electronic energy + Delta-G solvation = -17258.551836 eV Core-core repulsion = 14551.435024 eV Total energy + Delta-G solvation = -2707.116812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73931 -37.73297 -36.69555 -33.36554 -32.20715 -32.14714 -28.44900 -26.66647 -25.05026 -22.54539 -21.67131 -21.05663 -19.59945 -19.12006 -17.70109 -16.65109 -16.00803 -15.30421 -14.89502 -14.59906 -14.04610 -13.94066 -13.26322 -12.94268 -12.90000 -12.49937 -12.39989 -12.17436 -12.09586 -11.51758 -11.05741 -10.74516 -10.65764 -10.55710 -10.24179 -10.07439 -9.66018 -9.44720 -9.17530 -8.85607 -8.75171 -8.49213 -8.08929 -6.19728 -4.21174 3.05903 3.29787 3.39169 3.45210 3.63469 3.86864 4.38331 4.58392 4.71598 4.87195 4.96823 5.03747 5.21752 5.55652 5.66597 5.70599 5.73335 5.83416 5.93238 5.97747 6.13099 6.15451 6.28681 6.30558 6.46393 6.51951 6.71716 6.88387 6.94185 7.09179 7.25811 7.47900 7.66979 8.40065 8.62568 8.82527 9.16631 9.44725 10.91116 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.007162 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.022479 B = 3908.641409 C = 4298.995421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.125 3.875 3 N -0.723 5.723 4 C 0.703 3.297 5 O -0.599 6.599 6 N -0.719 5.719 7 C 0.174 3.826 8 C -0.017 4.017 9 C -0.490 4.490 10 H 0.078 0.922 11 C 0.084 3.916 12 N -0.892 5.892 13 Si 0.869 3.131 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.251 1.251 17 C -0.180 4.180 18 C -0.188 4.188 19 C -0.176 4.176 20 C -0.176 4.176 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.398 0.602 25 H 0.404 0.596 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -8.631 -4.819 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.036 3.964 3 N -0.379 5.379 4 C 0.403 3.597 5 O -0.478 6.478 6 N -0.372 5.372 7 C 0.050 3.950 8 C -0.019 4.019 9 C -0.527 4.527 10 H 0.096 0.904 11 C -0.119 4.119 12 N -0.528 5.528 13 Si 0.697 3.303 14 H -0.204 1.204 15 H -0.220 1.220 16 H -0.175 1.175 17 C -0.217 4.217 18 C -0.226 4.226 19 C -0.214 4.214 20 C -0.214 4.214 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.232 0.768 25 H 0.238 0.762 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.329 -8.969 -3.846 13.501 hybrid contribution 0.584 0.052 0.287 0.652 sum -8.745 -8.917 -3.560 12.987 Atomic orbital electron populations 1.21485 0.91499 1.02216 1.02756 1.20275 0.91911 0.79155 1.05022 1.44468 1.55326 1.15065 1.23019 1.15982 0.79954 0.80950 0.82823 1.90846 1.47537 1.76840 1.32580 1.45004 1.63212 1.11062 1.17953 1.20879 0.98400 0.89472 0.86287 1.19617 0.95150 0.86487 1.00601 1.20234 0.86036 1.43836 1.02546 0.90432 1.24903 0.94722 0.93904 0.98412 1.69902 1.00554 1.46366 1.35983 0.87010 0.78777 0.79206 0.85349 1.20430 1.21957 1.17458 1.22790 0.98200 1.04831 0.95918 1.23049 1.03377 1.03122 0.93064 1.23359 1.03206 1.01338 0.93538 1.23341 1.02488 1.00259 0.95323 0.92328 0.91805 0.90631 0.76789 0.76154 0.93103 0.93302 0.92477 0.89704 0.90867 0.91112 0.89297 0.88566 0.88418 0.87980 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.73 37.15 0.36 -1.15 16 2 C 0.12 1.68 2.30 -131.82 -0.30 1.38 16 3 N -0.72 -11.11 5.47 -52.42 -0.29 -11.40 16 4 C 0.70 13.79 8.37 -86.92 -0.73 13.06 16 5 O -0.60 -13.66 15.23 5.29 0.08 -13.57 16 6 N -0.72 -14.37 5.45 -65.22 -0.36 -14.73 16 7 C 0.17 3.83 5.12 -4.04 -0.02 3.81 16 8 C -0.02 -0.39 0.91 -155.66 -0.14 -0.53 16 9 C -0.49 -12.82 8.95 -34.44 -0.31 -13.12 16 10 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 11 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 12 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 13 Si 0.87 21.60 24.78 -169.99 -4.21 17.38 16 14 H -0.28 -7.11 6.98 56.52 0.39 -6.72 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.25 -5.90 6.00 56.52 0.34 -5.56 16 17 C -0.18 -3.50 9.95 -26.69 -0.27 -3.76 16 18 C -0.19 -3.86 8.50 -26.69 -0.23 -4.09 16 19 C -0.18 -2.27 10.15 -26.69 -0.27 -2.54 16 20 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 23 H 0.07 1.16 7.01 -51.93 -0.36 0.79 16 24 H 0.40 5.18 8.86 -40.82 -0.36 4.82 16 25 H 0.40 7.57 8.21 -40.82 -0.33 7.24 16 26 H 0.05 1.24 4.53 -51.93 -0.24 1.00 16 27 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -31.00 299.03 -7.33 -38.34 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.57 Total: 11.66 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.27 Total: -6.81 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.13 Total: -51.50 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.21 Total: 17.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.00 -7.33 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321572057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.626 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds