Wall clock time and date at job start Sun Mar 29 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 115.54974 * 2 1 4 4 C 1.34768 * 119.99963 * 62.94986 * 3 2 1 5 5 O 1.21583 * 120.00453 * 5.80268 * 4 3 2 6 6 N 1.34780 * 119.99701 * 185.80812 * 4 3 2 7 7 C 1.46509 * 120.00084 * 185.17474 * 6 4 3 8 8 C 1.52994 * 109.47296 * 184.59681 * 7 6 4 9 9 C 1.50704 * 115.55023 * 299.41554 * 8 7 6 10 10 H 1.08001 * 119.99789 * 120.00320 * 9 8 7 11 11 C 1.37874 * 119.99701 * 299.72685 * 9 8 7 12 12 N 1.31518 * 119.99739 * 172.50919 * 11 9 8 13 13 Si 1.86798 * 120.00363 * 352.51178 * 11 9 8 14 14 H 1.48499 * 109.47181 * 94.08983 * 13 11 9 15 15 H 1.48503 * 109.47331 * 214.09319 * 13 11 9 16 16 H 1.48507 * 109.46925 * 334.09098 * 13 11 9 17 17 C 1.52999 * 117.49670 * 85.07958 * 8 7 6 18 18 C 1.53003 * 117.49939 * 153.74090 * 8 7 6 19 19 C 1.53006 * 117.49916 * 145.66581 * 2 1 3 20 20 C 1.52996 * 117.50060 * 214.32582 * 2 1 3 21 21 H 1.08998 * 109.47223 * 65.62108 * 1 2 3 22 22 H 1.08998 * 109.47229 * 185.62651 * 1 2 3 23 23 H 1.09001 * 109.47210 * 305.62265 * 1 2 3 24 24 H 0.97004 * 119.99404 * 242.94759 * 3 2 1 25 25 H 0.97000 * 120.00600 * 5.17380 * 6 4 3 26 26 H 1.09004 * 109.46775 * 64.59694 * 7 6 4 27 27 H 1.08995 * 109.46980 * 304.59878 * 7 6 4 28 28 H 0.97005 * 119.99836 * 180.02562 * 12 11 9 29 29 H 1.09000 * 117.50244 * 214.99865 * 17 8 7 30 30 H 1.08997 * 117.49910 * 0.03128 * 17 8 7 31 31 H 1.09002 * 117.49304 * 359.97438 * 18 8 7 32 32 H 1.09001 * 117.49702 * 144.97503 * 18 8 7 33 33 H 1.09000 * 117.49846 * 215.00332 * 19 2 1 34 34 H 1.08997 * 117.49615 * 0.02727 * 19 2 1 35 35 H 1.08997 * 117.50025 * 359.97438 * 20 2 1 36 36 H 1.09001 * 117.50168 * 145.00036 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.1618 1.3218 0.0000 4 6 1.9735 2.1586 1.0395 5 8 1.3680 1.7796 2.0233 6 7 2.4565 3.4159 0.9884 7 6 2.3520 4.2890 2.1602 8 6 2.8671 5.6848 1.8038 9 6 4.3071 5.7538 1.3647 10 1 4.5548 6.1294 0.3829 11 6 5.3085 5.3425 2.2185 12 7 6.5485 5.2627 1.7874 13 14 4.9042 4.8986 3.9873 14 1 4.6752 3.4350 4.0904 15 1 6.0371 5.2855 4.8662 16 1 3.6789 5.6225 4.4117 17 6 1.8819 6.6557 1.1498 18 6 2.3148 6.8670 2.6029 19 6 2.2364 -1.1207 0.7655 20 6 2.2364 -1.1207 -0.7653 21 1 -0.3633 0.4242 -0.9360 22 1 -0.3633 -1.0227 0.1008 23 1 -0.3634 0.5986 0.8354 24 1 2.7157 1.5945 -0.7482 25 1 2.8733 3.7428 0.1758 26 1 2.9495 3.8780 2.9739 27 1 1.3097 4.3550 2.4723 28 1 7.2530 4.9730 2.3880 29 1 2.2752 7.3444 0.4021 30 1 0.8667 6.3001 0.9740 31 1 1.5841 6.6502 3.3821 32 1 2.9931 7.6944 2.8113 33 1 3.1713 -0.8746 1.2690 34 1 1.6112 -1.8582 1.2687 35 1 1.6112 -1.8584 -1.2684 36 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321572057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:29 Heat of formation + Delta-G solvation = -3.808518 kcal Electronic energy + Delta-G solvation = -17259.509953 eV Core-core repulsion = 14551.435024 eV Total energy + Delta-G solvation = -2708.074929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15963 -39.14592 -38.16894 -34.98823 -34.29840 -33.47236 -29.43104 -28.45152 -26.94568 -23.52342 -23.23912 -22.40628 -21.22400 -20.60664 -19.26018 -18.37486 -17.33798 -17.09635 -16.31387 -16.13925 -15.62331 -15.26536 -14.93231 -14.87159 -14.15650 -14.00715 -13.85524 -13.48024 -13.20053 -13.02547 -12.66486 -12.40944 -12.17117 -12.08423 -11.76561 -11.49149 -11.36341 -11.04935 -10.85381 -10.70958 -10.37812 -10.15769 -9.61227 -8.33731 -6.35304 1.29483 1.36278 1.45961 1.72640 2.18205 2.32405 2.82368 2.92686 3.25104 3.48074 3.75107 3.95806 4.02574 4.03767 4.30200 4.47001 4.53937 4.62608 4.73220 4.80301 4.83733 4.89088 4.92307 4.98838 5.06100 5.21048 5.25006 5.29543 5.51219 5.61723 5.68323 5.73413 6.08722 6.29096 6.70469 7.18469 7.32437 7.65735 8.80426 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.007162 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.022479 B = 3908.641409 C = 4298.995421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.093 3.907 3 N -0.711 5.711 4 C 0.699 3.301 5 O -0.633 6.633 6 N -0.720 5.720 7 C 0.181 3.819 8 C -0.044 4.044 9 C -0.473 4.473 10 H 0.048 0.952 11 C 0.038 3.962 12 N -0.936 5.936 13 Si 0.916 3.084 14 H -0.293 1.293 15 H -0.296 1.296 16 H -0.228 1.228 17 C -0.154 4.154 18 C -0.183 4.183 19 C -0.194 4.194 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.040 0.960 24 H 0.409 0.591 25 H 0.408 0.592 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 -9.289 -5.560 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.005 3.995 3 N -0.366 5.366 4 C 0.399 3.601 5 O -0.515 6.515 6 N -0.374 5.374 7 C 0.056 3.944 8 C -0.045 4.045 9 C -0.511 4.511 10 H 0.066 0.934 11 C -0.161 4.161 12 N -0.576 5.576 13 Si 0.743 3.257 14 H -0.221 1.221 15 H -0.223 1.223 16 H -0.150 1.150 17 C -0.191 4.191 18 C -0.221 4.221 19 C -0.232 4.232 20 C -0.174 4.174 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.059 0.941 24 H 0.245 0.755 25 H 0.244 0.756 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.152 0.848 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.146 -9.627 -4.624 15.437 hybrid contribution 1.121 0.237 0.426 1.223 sum -10.025 -9.390 -4.198 14.363 Atomic orbital electron populations 1.21441 0.90713 1.03246 1.01929 1.20706 0.92722 0.78497 1.07565 1.44411 1.54830 1.15302 1.22056 1.16167 0.79579 0.81056 0.83297 1.90815 1.49093 1.77419 1.34186 1.44945 1.63490 1.11357 1.17630 1.20684 0.98263 0.89158 0.86250 1.19475 0.93724 0.87572 1.03735 1.20354 0.88161 1.41662 1.00921 0.93397 1.25494 0.94634 0.94578 1.01388 1.70007 1.01550 1.48905 1.37108 0.86260 0.79239 0.78111 0.82066 1.22067 1.22272 1.15033 1.22835 0.98420 1.02590 0.95257 1.23100 1.03339 1.01234 0.94472 1.23392 1.02377 1.01702 0.95752 1.23461 1.02480 0.98075 0.93433 0.91042 0.89304 0.94059 0.75475 0.75648 0.95721 0.92331 0.92670 0.89483 0.88351 0.89025 0.89802 0.90998 0.87220 0.84829 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.73 71.98 0.70 -1.95 16 2 C 0.09 2.33 2.30 3.60 0.01 2.34 16 3 N -0.71 -21.13 5.47 -438.02 -2.39 -23.53 16 4 C 0.70 27.18 8.37 179.06 1.50 28.67 16 5 O -0.63 -28.95 15.23 -3.98 -0.06 -29.01 16 6 N -0.72 -28.42 5.45 -478.53 -2.61 -31.03 16 7 C 0.18 7.80 5.12 86.38 0.44 8.24 16 8 C -0.04 -1.89 0.91 -52.93 -0.05 -1.94 16 9 C -0.47 -24.84 8.95 25.60 0.23 -24.61 16 10 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 11 C 0.04 2.13 5.46 84.65 0.46 2.59 16 12 N -0.94 -56.20 13.96 21.45 0.30 -55.90 16 13 Si 0.92 44.90 24.78 68.60 1.70 46.60 16 14 H -0.29 -15.02 6.98 99.48 0.69 -14.33 16 15 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 16 H -0.23 -10.17 6.00 99.48 0.60 -9.57 16 17 C -0.15 -5.53 9.95 30.62 0.30 -5.23 16 18 C -0.18 -7.03 8.50 30.62 0.26 -6.77 16 19 C -0.19 -4.72 10.15 30.62 0.31 -4.41 16 20 C -0.14 -2.40 10.18 30.62 0.31 -2.08 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 23 H 0.04 1.23 7.01 -2.39 -0.02 1.22 16 24 H 0.41 10.12 8.86 -92.71 -0.82 9.30 16 25 H 0.41 15.13 8.21 -92.71 -0.76 14.37 16 26 H 0.02 1.19 4.53 -2.38 -0.01 1.18 16 27 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.78 299.03 0.80 -66.98 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.62 Total: 31.03 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.48 Total: -5.15 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.70 Total: -110.45 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.06 Total: -29.01 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.70 Total: 46.60 kcal Total: -67.78 0.80 -66.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321572057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.171 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds