Wall clock time and date at job start Sun Mar 29 2020 22:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 5 5 C 1.53000 * 109.47341 * 64.99479 * 3 2 1 6 6 C 1.50701 * 109.47348 * 184.99767 * 3 2 1 7 7 N 1.30273 * 126.27760 * 299.69044 * 6 3 2 8 8 N 1.28676 * 109.37736 * 179.81919 * 7 6 3 9 9 C 1.30275 * 109.37887 * 0.45139 * 8 7 6 10 10 C 1.50703 * 126.28036 * 179.73039 * 9 8 7 11 11 C 1.53002 * 109.47176 * 89.99338 * 10 9 8 12 12 C 1.53000 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46932 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99879 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99712 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00095 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47627 * 89.99483 * 17 15 13 19 19 H 1.48508 * 109.47160 * 209.99903 * 17 15 13 20 20 H 1.48504 * 109.47040 * 329.99434 * 17 15 13 21 21 O 1.34360 * 126.28249 * 119.99602 * 6 3 2 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 26 26 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 27 27 H 1.08994 * 109.47725 * 300.00215 * 5 3 2 28 28 H 1.09002 * 109.46818 * 59.99962 * 5 3 2 29 29 H 1.08999 * 109.47412 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.46830 * 209.99237 * 10 9 8 31 31 H 1.08996 * 109.47029 * 329.99520 * 10 9 8 32 32 H 1.08991 * 109.47075 * 300.00233 * 11 10 9 33 33 H 1.09004 * 109.46722 * 59.99972 * 11 10 9 34 34 H 1.08999 * 109.46977 * 300.00427 * 12 11 10 35 35 H 1.09000 * 109.46847 * 59.99835 * 12 11 10 36 36 H 0.97001 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 7 4.3845 0.8988 0.7067 8 7 5.5849 1.0917 0.2852 9 6 5.5493 1.7751 -0.8233 10 6 6.7382 2.2166 -1.6374 11 6 7.0798 1.1382 -2.6676 12 6 8.2864 1.5868 -3.4944 13 6 8.6225 0.5249 -4.5096 14 1 8.0340 -0.3792 -4.5602 15 6 9.6806 0.7082 -5.3744 16 7 9.9742 -0.2187 -6.2599 17 14 10.6980 2.2724 -5.2872 18 1 11.8267 2.0768 -4.3422 19 1 11.2312 2.5919 -6.6359 20 1 9.8448 3.3921 -4.8143 21 8 4.2580 2.0138 -1.1078 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 0.5490 2.1253 1.3969 28 1 2.0698 1.5876 2.1491 29 1 1.9989 3.1541 1.3075 30 1 6.5008 3.1480 -2.1514 31 1 7.5921 2.3727 -0.9782 32 1 7.3170 0.2069 -2.1536 33 1 6.2258 0.9821 -3.3268 34 1 8.0487 2.5181 -4.0084 35 1 9.1405 1.7433 -2.8354 36 1 10.7188 -0.0899 -6.8681 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329310342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:35 Heat of formation + Delta-G solvation = 1.841826 kcal Electronic energy + Delta-G solvation = -16361.877308 eV Core-core repulsion = 13654.047396 eV Total energy + Delta-G solvation = -2707.829912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.09116 -37.03103 -35.99554 -35.16813 -32.61758 -31.11526 -29.72903 -27.78943 -25.54561 -24.09242 -23.18182 -21.85089 -20.55394 -20.28132 -17.23798 -17.12996 -16.70376 -15.66780 -15.35797 -14.73398 -14.33848 -14.03091 -13.85768 -13.25448 -12.79879 -12.56675 -12.34066 -12.21535 -12.09507 -12.05411 -11.81598 -11.64161 -11.35999 -11.17553 -11.08654 -10.90261 -10.69815 -10.10647 -9.95444 -9.80830 -9.29537 -9.15684 -8.57160 -6.07081 -4.06142 1.28309 2.32817 2.52055 3.29143 3.36558 3.38521 3.84088 4.31385 4.42181 4.53444 4.62204 4.77318 4.97110 5.09220 5.21578 5.23009 5.26951 5.43820 5.45957 5.51308 5.55873 5.64080 5.65104 5.68234 5.75246 5.97599 5.98403 6.00091 6.34751 6.42979 6.73511 7.18353 7.31555 7.73513 8.45599 8.49627 8.97272 9.54253 11.06345 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046090 B = 0.004066 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.364020 B = 6884.410501 C = 7187.277329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.010 3.990 4 H 0.099 0.901 5 C -0.145 4.145 6 C 0.149 3.851 7 N -0.284 5.284 8 N -0.296 5.296 9 C 0.184 3.816 10 C -0.031 4.031 11 C -0.099 4.099 12 C -0.012 4.012 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.265 1.265 21 O -0.225 6.225 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.683 6.092 12.734 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.010 4.010 4 H 0.117 0.883 5 C -0.203 4.203 6 C -0.062 4.062 7 N -0.130 5.130 8 N -0.142 5.142 9 C -0.026 4.026 10 C -0.070 4.070 11 C -0.138 4.138 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.190 1.190 21 O -0.105 6.105 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.085 5.401 13.616 22.505 hybrid contribution 0.271 1.333 -1.149 1.781 sum -16.814 6.735 12.467 21.988 Atomic orbital electron populations 1.21818 0.94500 1.02365 1.02189 1.21597 0.96465 0.93741 1.03749 1.19741 0.80744 0.99374 1.01186 0.88260 1.21898 1.02190 1.00555 0.95662 1.27908 0.98181 0.95470 0.84642 1.74274 0.95224 1.19235 1.24286 1.74425 1.14169 1.15717 1.09866 1.28483 0.83693 0.95873 0.94580 1.20607 0.88368 1.01284 0.96737 1.21557 1.00481 0.96360 0.95380 1.19574 0.92669 0.97495 0.95178 1.21088 1.14939 1.04347 1.15732 0.91016 1.25035 0.97056 0.96457 0.94951 1.69913 1.29430 1.34017 1.20744 0.86760 0.80764 0.84272 0.77368 1.20187 1.21372 1.18952 1.84801 1.19024 1.60884 1.45743 0.92044 0.92080 0.92400 0.90350 0.91325 0.90516 0.91063 0.92235 0.88817 0.87319 0.91654 0.92193 0.96242 0.96495 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -1.01 5.38 -26.73 -0.14 -1.16 16 3 C 0.01 0.09 2.86 -91.77 -0.26 -0.17 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.12 8.93 37.16 0.33 -0.79 16 6 C 0.15 2.11 6.99 -12.94 -0.09 2.02 16 7 N -0.28 -4.71 12.22 32.55 0.40 -4.32 16 8 N -0.30 -5.35 12.22 32.55 0.40 -4.95 16 9 C 0.18 3.07 7.73 -12.94 -0.10 2.97 16 10 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16 11 C -0.10 -1.93 5.14 -26.73 -0.14 -2.06 16 12 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 13 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 21 O -0.23 -3.53 10.87 5.39 0.06 -3.47 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -32.39 302.97 -4.91 -37.30 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.69 Total: -4.65 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.75 Total: -14.12 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 1.57 Total: -36.30 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.06 Total: -3.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.39 -4.91 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329310342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.139 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds