Wall clock time and date at job start Sun Mar 29 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 5 5 C 1.53000 * 109.47341 * 64.99479 * 3 2 1 6 6 C 1.50701 * 109.47348 * 184.99767 * 3 2 1 7 7 N 1.30273 * 126.27760 * 299.69044 * 6 3 2 8 8 N 1.28676 * 109.37736 * 179.81919 * 7 6 3 9 9 C 1.30275 * 109.37887 * 0.45139 * 8 7 6 10 10 C 1.50703 * 126.28036 * 179.73039 * 9 8 7 11 11 C 1.53002 * 109.47176 * 89.99338 * 10 9 8 12 12 C 1.53000 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46932 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99879 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99712 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00095 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47627 * 89.99483 * 17 15 13 19 19 H 1.48508 * 109.47160 * 209.99903 * 17 15 13 20 20 H 1.48504 * 109.47040 * 329.99434 * 17 15 13 21 21 O 1.34360 * 126.28249 * 119.99602 * 6 3 2 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 26 26 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 27 27 H 1.08994 * 109.47725 * 300.00215 * 5 3 2 28 28 H 1.09002 * 109.46818 * 59.99962 * 5 3 2 29 29 H 1.08999 * 109.47412 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.46830 * 209.99237 * 10 9 8 31 31 H 1.08996 * 109.47029 * 329.99520 * 10 9 8 32 32 H 1.08991 * 109.47075 * 300.00233 * 11 10 9 33 33 H 1.09004 * 109.46722 * 59.99972 * 11 10 9 34 34 H 1.08999 * 109.46977 * 300.00427 * 12 11 10 35 35 H 1.09000 * 109.46847 * 59.99835 * 12 11 10 36 36 H 0.97001 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 7 4.3845 0.8988 0.7067 8 7 5.5849 1.0917 0.2852 9 6 5.5493 1.7751 -0.8233 10 6 6.7382 2.2166 -1.6374 11 6 7.0798 1.1382 -2.6676 12 6 8.2864 1.5868 -3.4944 13 6 8.6225 0.5249 -4.5096 14 1 8.0340 -0.3792 -4.5602 15 6 9.6806 0.7082 -5.3744 16 7 9.9742 -0.2187 -6.2599 17 14 10.6980 2.2724 -5.2872 18 1 11.8267 2.0768 -4.3422 19 1 11.2312 2.5919 -6.6359 20 1 9.8448 3.3921 -4.8143 21 8 4.2580 2.0138 -1.1078 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 0.5490 2.1253 1.3969 28 1 2.0698 1.5876 2.1491 29 1 1.9989 3.1541 1.3075 30 1 6.5008 3.1480 -2.1514 31 1 7.5921 2.3727 -0.9782 32 1 7.3170 0.2069 -2.1536 33 1 6.2258 0.9821 -3.3268 34 1 8.0487 2.5181 -4.0084 35 1 9.1405 1.7433 -2.8354 36 1 10.7188 -0.0899 -6.8681 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329310342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:34 Heat of formation + Delta-G solvation = -22.079288 kcal Electronic energy + Delta-G solvation = -16362.914605 eV Core-core repulsion = 13654.047396 eV Total energy + Delta-G solvation = -2708.867209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.31119 -37.82742 -37.23619 -36.72858 -34.57098 -32.41494 -30.74947 -29.20441 -26.45452 -25.71713 -24.14185 -23.26678 -22.02515 -21.34014 -18.98269 -18.36194 -18.23548 -16.65027 -16.54086 -16.03737 -15.82319 -15.45896 -14.81448 -14.65498 -14.07379 -13.79051 -13.53497 -13.50271 -13.13155 -13.00222 -12.91018 -12.74485 -12.68138 -12.46409 -12.08310 -11.96639 -11.80922 -11.70830 -11.66228 -11.53481 -11.37754 -10.75528 -10.47094 -8.28386 -6.34068 0.09439 1.20393 1.27960 1.40493 1.42444 1.54242 2.38784 2.76269 3.07476 3.35533 3.64629 3.85293 3.98914 4.04890 4.09632 4.20297 4.26371 4.43485 4.48605 4.61346 4.68088 4.73083 4.83574 4.85335 4.90556 4.98820 4.99967 5.09903 5.14979 5.33594 5.42078 5.45739 5.53454 5.65421 6.27243 6.74165 7.22313 7.30560 8.88819 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046090 B = 0.004066 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.364020 B = 6884.410501 C = 7187.277329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.007 3.993 4 H 0.120 0.880 5 C -0.141 4.141 6 C 0.164 3.836 7 N -0.314 5.314 8 N -0.323 5.323 9 C 0.177 3.823 10 C -0.020 4.020 11 C -0.090 4.090 12 C -0.009 4.009 13 C -0.539 4.539 14 H 0.024 0.976 15 C 0.000 4.000 16 N -0.955 5.955 17 Si 0.957 3.043 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.234 1.234 21 O -0.230 6.230 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 8.733 13.692 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.013 4.013 4 H 0.138 0.862 5 C -0.198 4.198 6 C -0.048 4.048 7 N -0.159 5.159 8 N -0.169 5.169 9 C -0.034 4.034 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.046 4.046 13 C -0.577 4.577 14 H 0.043 0.957 15 C -0.197 4.197 16 N -0.596 5.596 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.157 1.157 21 O -0.110 6.110 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.186 8.036 14.608 24.672 hybrid contribution 0.493 0.377 -1.455 1.582 sum -17.693 8.413 13.154 23.598 Atomic orbital electron populations 1.21799 0.92093 1.03021 1.03399 1.21587 0.98437 0.92906 1.02444 1.20162 0.77663 1.00350 1.03106 0.86171 1.21908 1.04049 0.99942 0.93902 1.28949 0.99661 0.93041 0.83152 1.74221 0.95241 1.20913 1.25550 1.74358 1.15268 1.16381 1.10851 1.28558 0.84322 0.96003 0.94546 1.20501 0.88741 1.00581 0.95985 1.21315 0.98805 0.96986 0.95764 1.19519 0.94472 0.96173 0.94460 1.21493 1.14459 1.04339 1.17364 0.95746 1.26127 0.98579 1.00680 0.94290 1.70088 1.30535 1.36853 1.22113 0.85564 0.79095 0.79816 0.77604 1.19175 1.21313 1.15727 1.84816 1.18833 1.61170 1.46179 0.91759 0.90528 0.91475 0.91469 0.92932 0.87461 0.92282 0.92253 0.86053 0.85686 0.93592 0.93174 0.94575 0.95051 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 71.98 0.70 -0.74 16 2 C -0.12 -1.86 5.38 30.60 0.16 -1.69 16 3 C 0.01 0.12 2.86 -11.54 -0.03 0.09 16 4 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.14 -1.82 8.93 71.98 0.64 -1.18 16 6 C 0.16 4.47 6.99 88.34 0.62 5.09 16 7 N -0.31 -10.40 12.22 -165.51 -2.02 -12.42 16 8 N -0.32 -11.63 12.22 -165.50 -2.02 -13.66 16 9 C 0.18 5.72 7.73 88.34 0.68 6.41 16 10 C -0.02 -0.58 5.84 29.85 0.17 -0.40 16 11 C -0.09 -3.45 5.14 30.59 0.16 -3.29 16 12 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 13 C -0.54 -31.11 9.66 25.60 0.25 -30.86 16 14 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 15 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 16 N -0.96 -60.48 13.96 21.45 0.30 -60.18 16 17 Si 0.96 43.09 27.47 68.60 1.88 44.97 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 21 O -0.23 -6.94 10.87 -3.64 -0.04 -6.98 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.08 0.53 6.56 -2.39 -0.02 0.51 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 0.75 6.56 -2.39 -0.02 0.73 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 35 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -72.42 302.97 3.02 -69.40 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.99 Total: 5.29 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.93 Total: -26.42 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -3.75 Total: -86.25 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.04 Total: -6.98 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -72.42 3.02 -69.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329310342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds