Wall clock time and date at job start Sun Mar 29 2020 22:33:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52995 * 109.47713 * 2 1
4 4 H 1.09005 * 109.46951 * 54.99234 * 3 2 1
5 5 C 1.53005 * 109.46846 * 295.00004 * 3 2 1
6 6 C 1.50697 * 109.47781 * 174.99893 * 3 2 1
7 7 N 1.30269 * 126.28331 * 59.99414 * 6 3 2
8 8 N 1.28666 * 109.38446 * 179.73449 * 7 6 3
9 9 C 1.30276 * 109.37739 * 0.44884 * 8 7 6
10 10 C 1.50706 * 126.28153 * 179.82777 * 9 8 7
11 11 C 1.52999 * 109.46953 * 89.68858 * 10 9 8
12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9
13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10
14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11
15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11
16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12
17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12
18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13
19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13
20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13
21 21 O 1.34360 * 107.43484 * 359.55973 * 9 8 7
22 22 H 1.09001 * 109.46617 * 60.00361 * 1 2 3
23 23 H 1.08996 * 109.46976 * 179.97438 * 1 2 3
24 24 H 1.08993 * 109.47039 * 300.00105 * 1 2 3
25 25 H 1.08999 * 109.47694 * 239.99305 * 2 1 3
26 26 H 1.09005 * 109.47318 * 119.99736 * 2 1 3
27 27 H 1.09000 * 109.46687 * 179.97438 * 5 3 2
28 28 H 1.08996 * 109.46788 * 299.99493 * 5 3 2
29 29 H 1.09004 * 109.47182 * 59.99833 * 5 3 2
30 30 H 1.09000 * 109.46974 * 329.68606 * 10 9 8
31 31 H 1.09001 * 109.46547 * 209.68697 * 10 9 8
32 32 H 1.09000 * 109.47486 * 60.00062 * 11 10 9
33 33 H 1.09001 * 109.47362 * 299.99339 * 11 10 9
34 34 H 1.08993 * 109.46955 * 300.00075 * 12 11 10
35 35 H 1.09000 * 109.47050 * 59.99904 * 12 11 10
36 36 H 0.96992 * 120.00032 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 0.8418
5 6 1.6354 2.1264 -1.3074
6 6 3.5420 1.4442 0.1239
7 7 4.3844 0.8938 -0.7034
8 7 5.5852 1.0964 -0.2880
9 6 5.5493 1.7749 0.8236
10 6 6.7382 2.2165 1.6377
11 6 7.2012 3.5937 1.1583
12 6 8.4079 4.0423 1.9853
13 6 8.8644 5.3985 1.5127
14 1 8.3461 5.8910 0.7033
15 6 9.9445 6.0101 2.1130
16 7 10.5760 5.4102 3.0984
17 14 10.5100 7.6915 1.5279
18 1 9.4057 8.6704 1.6933
19 1 11.6812 8.1269 2.3303
20 1 10.8924 7.6142 0.0950
21 8 4.2580 2.0137 1.1079
22 1 -0.3632 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8899
25 1 1.8934 -0.5139 -0.8899
26 1 1.8934 -0.5138 0.8900
27 1 1.9984 3.1542 -1.3072
28 1 2.0700 1.5874 -2.1491
29 1 0.5490 2.1252 -1.3970
30 1 7.5487 1.4980 1.5162
31 1 6.4574 2.2733 2.6894
32 1 6.3906 4.3123 1.2797
33 1 7.4820 3.5369 0.1066
34 1 8.1268 4.0991 3.0368
35 1 9.2186 3.3238 1.8642
36 1 11.3356 5.8406 3.5210
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329310343.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:33:37
Heat of formation + Delta-G solvation = -2.049725 kcal
Electronic energy + Delta-G solvation = -16309.671756 eV
Core-core repulsion = 13601.673094 eV
Total energy + Delta-G solvation = -2707.998662 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-44.03643 -37.00937 -35.94125 -35.02058 -32.65253 -30.99639 -29.52923 -27.43880
-25.49577 -24.09637 -23.16158 -21.93176 -20.55083 -20.32393 -17.21660 -17.00695
-16.33853 -15.63360 -15.31366 -14.63793 -14.28949 -14.15443 -13.89310 -13.18270
-12.57813 -12.48164 -12.21338 -12.14669 -12.04410 -11.90736 -11.70280 -11.50473
-11.29649 -11.10065 -10.89185 -10.87420 -10.69859 -10.56978 -9.83789 -9.64468
-9.27805 -9.02597 -8.38450 -6.03799 -4.06494 1.33978 2.38467 2.57542
3.32352 3.36605 3.39410 3.89562 4.34275 4.44017 4.54830 4.67306
4.79839 4.98295 5.09753 5.24244 5.29961 5.32554 5.46002 5.55223
5.58481 5.65362 5.66452 5.69481 5.74817 5.77101 5.97664 6.02453
6.10438 6.49548 6.63647 6.94340 7.59442 7.71472 7.94492 8.36161
8.51219 8.99388 9.57832 11.07520
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.050748 B = 0.003813 C = 0.003698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 551.612666 B = 7342.327523 C = 7569.322399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.116 4.116
3 C 0.010 3.990
4 H 0.099 0.901
5 C -0.147 4.147
6 C 0.147 3.853
7 N -0.284 5.284
8 N -0.298 5.298
9 C 0.186 3.814
10 C -0.029 4.029
11 C -0.107 4.107
12 C 0.023 3.977
13 C -0.523 4.523
14 H 0.055 0.945
15 C 0.058 3.942
16 N -0.895 5.895
17 Si 0.894 3.106
18 H -0.277 1.277
19 H -0.287 1.287
20 H -0.276 1.276
21 O -0.226 6.226
22 H 0.061 0.939
23 H 0.060 0.940
24 H 0.057 0.943
25 H 0.078 0.922
26 H 0.066 0.934
27 H 0.060 0.940
28 H 0.070 0.930
29 H 0.076 0.924
30 H 0.109 0.891
31 H 0.093 0.907
32 H 0.053 0.947
33 H 0.059 0.941
34 H 0.020 0.980
35 H 0.022 0.978
36 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.964 -8.972 -4.016 21.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.154 4.154
3 C -0.010 4.010
4 H 0.117 0.883
5 C -0.204 4.204
6 C -0.065 4.065
7 N -0.131 5.131
8 N -0.144 5.144
9 C -0.024 4.024
10 C -0.068 4.068
11 C -0.145 4.145
12 C -0.014 4.014
13 C -0.561 4.561
14 H 0.073 0.927
15 C -0.144 4.144
16 N -0.534 5.534
17 Si 0.721 3.279
18 H -0.202 1.202
19 H -0.212 1.212
20 H -0.202 1.202
21 O -0.105 6.105
22 H 0.080 0.920
23 H 0.079 0.921
24 H 0.076 0.924
25 H 0.096 0.904
26 H 0.084 0.916
27 H 0.080 0.920
28 H 0.089 0.911
29 H 0.094 0.906
30 H 0.127 0.873
31 H 0.112 0.888
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.038 0.962
35 H 0.040 0.960
36 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -18.338 -9.604 -4.915 21.276
hybrid contribution 0.030 1.603 0.778 1.782
sum -18.308 -8.001 -4.137 20.403
Atomic orbital electron populations
1.21819 0.94539 1.02268 1.02287 1.21581 0.96428 0.93837 1.03539
1.19727 0.80818 0.99204 1.01269 0.88290 1.21908 1.02117 1.00800
0.95599 1.27880 0.98149 0.95266 0.85168 1.74258 0.95255 1.19377
1.24175 1.74424 1.14030 1.16502 1.09432 1.28614 0.83629 0.95197
0.94948 1.20616 0.87951 1.00881 0.97345 1.21746 1.00526 0.91039
1.01221 1.19099 0.91100 0.96352 0.94817 1.21164 1.13929 1.02910
1.18143 0.92687 1.25009 0.96455 0.97898 0.94996 1.69946 1.21275
1.38429 1.23765 0.86632 0.78157 0.84260 0.78820 1.20239 1.21231
1.20173 1.84803 1.19088 1.60940 1.45669 0.91992 0.92127 0.92418
0.90372 0.91553 0.92043 0.91064 0.90561 0.87291 0.88809 0.92828
0.92250 0.96184 0.96013 0.92852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16
2 C -0.12 -0.95 5.38 -26.73 -0.14 -1.10 16
3 C 0.01 0.10 2.86 -91.77 -0.26 -0.17 16
4 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16
5 C -0.15 -1.24 8.93 37.16 0.33 -0.91 16
6 C 0.15 2.13 6.99 -12.94 -0.09 2.04 16
7 N -0.28 -4.83 12.22 32.55 0.40 -4.44 16
8 N -0.30 -5.56 12.22 32.55 0.40 -5.16 16
9 C 0.19 3.23 7.73 -12.94 -0.10 3.13 16
10 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16
11 C -0.11 -2.17 5.14 -26.73 -0.14 -2.31 16
12 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16
13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16
14 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16
15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
16 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16
17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16
18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
21 O -0.23 -3.66 10.87 5.39 0.06 -3.60 16
22 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16
23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
29 H 0.08 0.45 6.57 -51.93 -0.34 0.11 16
30 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16
31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16
32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 306.57 15.07 4.62 4.62
Total: -1.00 -31.64 306.57 -5.28 -36.92
By element:
Atomic # 1 Polarization: 0.15 SS G_CDS: -5.72 Total: -5.57 kcal
Atomic # 6 Polarization: -12.77 SS G_CDS: -0.76 Total: -13.52 kcal
Atomic # 7 Polarization: -36.97 SS G_CDS: 1.53 Total: -35.43 kcal
Atomic # 8 Polarization: -3.66 SS G_CDS: 0.06 Total: -3.60 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -31.64 -5.28 -36.92 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329310343.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal
(2) G-P(sol) polarization free energy of solvation -31.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.050 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds