Wall clock time and date at job start Sun Mar 29 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47713 * 2 1 4 4 H 1.09005 * 109.46951 * 54.99234 * 3 2 1 5 5 C 1.53005 * 109.46846 * 295.00004 * 3 2 1 6 6 C 1.50697 * 109.47781 * 174.99893 * 3 2 1 7 7 N 1.30269 * 126.28331 * 59.99414 * 6 3 2 8 8 N 1.28666 * 109.38446 * 179.73449 * 7 6 3 9 9 C 1.30276 * 109.37739 * 0.44884 * 8 7 6 10 10 C 1.50706 * 126.28153 * 179.82777 * 9 8 7 11 11 C 1.52999 * 109.46953 * 89.68858 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 O 1.34360 * 107.43484 * 359.55973 * 9 8 7 22 22 H 1.09001 * 109.46617 * 60.00361 * 1 2 3 23 23 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47039 * 300.00105 * 1 2 3 25 25 H 1.08999 * 109.47694 * 239.99305 * 2 1 3 26 26 H 1.09005 * 109.47318 * 119.99736 * 2 1 3 27 27 H 1.09000 * 109.46687 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46788 * 299.99493 * 5 3 2 29 29 H 1.09004 * 109.47182 * 59.99833 * 5 3 2 30 30 H 1.09000 * 109.46974 * 329.68606 * 10 9 8 31 31 H 1.09001 * 109.46547 * 209.68697 * 10 9 8 32 32 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 33 33 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 34 34 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 35 35 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 36 36 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5420 1.4442 0.1239 7 7 4.3844 0.8938 -0.7034 8 7 5.5852 1.0964 -0.2880 9 6 5.5493 1.7749 0.8236 10 6 6.7382 2.2165 1.6377 11 6 7.2012 3.5937 1.1583 12 6 8.4079 4.0423 1.9853 13 6 8.8644 5.3985 1.5127 14 1 8.3461 5.8910 0.7033 15 6 9.9445 6.0101 2.1130 16 7 10.5760 5.4102 3.0984 17 14 10.5100 7.6915 1.5279 18 1 9.4057 8.6704 1.6933 19 1 11.6812 8.1269 2.3303 20 1 10.8924 7.6142 0.0950 21 8 4.2580 2.0137 1.1079 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.9984 3.1542 -1.3072 28 1 2.0700 1.5874 -2.1491 29 1 0.5490 2.1252 -1.3970 30 1 7.5487 1.4980 1.5162 31 1 6.4574 2.2733 2.6894 32 1 6.3906 4.3123 1.2797 33 1 7.4820 3.5369 0.1066 34 1 8.1268 4.0991 3.0368 35 1 9.2186 3.3238 1.8642 36 1 11.3356 5.8406 3.5210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329310343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:37 Heat of formation + Delta-G solvation = -2.049725 kcal Electronic energy + Delta-G solvation = -16309.671756 eV Core-core repulsion = 13601.673094 eV Total energy + Delta-G solvation = -2707.998662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.03643 -37.00937 -35.94125 -35.02058 -32.65253 -30.99639 -29.52923 -27.43880 -25.49577 -24.09637 -23.16158 -21.93176 -20.55083 -20.32393 -17.21660 -17.00695 -16.33853 -15.63360 -15.31366 -14.63793 -14.28949 -14.15443 -13.89310 -13.18270 -12.57813 -12.48164 -12.21338 -12.14669 -12.04410 -11.90736 -11.70280 -11.50473 -11.29649 -11.10065 -10.89185 -10.87420 -10.69859 -10.56978 -9.83789 -9.64468 -9.27805 -9.02597 -8.38450 -6.03799 -4.06494 1.33978 2.38467 2.57542 3.32352 3.36605 3.39410 3.89562 4.34275 4.44017 4.54830 4.67306 4.79839 4.98295 5.09753 5.24244 5.29961 5.32554 5.46002 5.55223 5.58481 5.65362 5.66452 5.69481 5.74817 5.77101 5.97664 6.02453 6.10438 6.49548 6.63647 6.94340 7.59442 7.71472 7.94492 8.36161 8.51219 8.99388 9.57832 11.07520 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.003813 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.612666 B = 7342.327523 C = 7569.322399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.010 3.990 4 H 0.099 0.901 5 C -0.147 4.147 6 C 0.147 3.853 7 N -0.284 5.284 8 N -0.298 5.298 9 C 0.186 3.814 10 C -0.029 4.029 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.226 6.226 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 -8.972 -4.016 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.010 4.010 4 H 0.117 0.883 5 C -0.204 4.204 6 C -0.065 4.065 7 N -0.131 5.131 8 N -0.144 5.144 9 C -0.024 4.024 10 C -0.068 4.068 11 C -0.145 4.145 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.105 6.105 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.338 -9.604 -4.915 21.276 hybrid contribution 0.030 1.603 0.778 1.782 sum -18.308 -8.001 -4.137 20.403 Atomic orbital electron populations 1.21819 0.94539 1.02268 1.02287 1.21581 0.96428 0.93837 1.03539 1.19727 0.80818 0.99204 1.01269 0.88290 1.21908 1.02117 1.00800 0.95599 1.27880 0.98149 0.95266 0.85168 1.74258 0.95255 1.19377 1.24175 1.74424 1.14030 1.16502 1.09432 1.28614 0.83629 0.95197 0.94948 1.20616 0.87951 1.00881 0.97345 1.21746 1.00526 0.91039 1.01221 1.19099 0.91100 0.96352 0.94817 1.21164 1.13929 1.02910 1.18143 0.92687 1.25009 0.96455 0.97898 0.94996 1.69946 1.21275 1.38429 1.23765 0.86632 0.78157 0.84260 0.78820 1.20239 1.21231 1.20173 1.84803 1.19088 1.60940 1.45669 0.91992 0.92127 0.92418 0.90372 0.91553 0.92043 0.91064 0.90561 0.87291 0.88809 0.92828 0.92250 0.96184 0.96013 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.95 5.38 -26.73 -0.14 -1.10 16 3 C 0.01 0.10 2.86 -91.77 -0.26 -0.17 16 4 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -1.24 8.93 37.16 0.33 -0.91 16 6 C 0.15 2.13 6.99 -12.94 -0.09 2.04 16 7 N -0.28 -4.83 12.22 32.55 0.40 -4.44 16 8 N -0.30 -5.56 12.22 32.55 0.40 -5.16 16 9 C 0.19 3.23 7.73 -12.94 -0.10 3.13 16 10 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16 11 C -0.11 -2.17 5.14 -26.73 -0.14 -2.31 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 O -0.23 -3.66 10.87 5.39 0.06 -3.60 16 22 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.45 6.57 -51.93 -0.34 0.11 16 30 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -31.64 306.57 -5.28 -36.92 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -5.72 Total: -5.57 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.76 Total: -13.52 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 1.53 Total: -35.43 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.64 -5.28 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329310343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds