Wall clock time and date at job start Sun Mar 29 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47713 * 2 1 4 4 H 1.09005 * 109.46951 * 54.99234 * 3 2 1 5 5 C 1.53005 * 109.46846 * 295.00004 * 3 2 1 6 6 C 1.50697 * 109.47781 * 174.99893 * 3 2 1 7 7 N 1.30269 * 126.28331 * 59.99414 * 6 3 2 8 8 N 1.28666 * 109.38446 * 179.73449 * 7 6 3 9 9 C 1.30276 * 109.37739 * 0.44884 * 8 7 6 10 10 C 1.50706 * 126.28153 * 179.82777 * 9 8 7 11 11 C 1.52999 * 109.46953 * 89.68858 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 O 1.34360 * 107.43484 * 359.55973 * 9 8 7 22 22 H 1.09001 * 109.46617 * 60.00361 * 1 2 3 23 23 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47039 * 300.00105 * 1 2 3 25 25 H 1.08999 * 109.47694 * 239.99305 * 2 1 3 26 26 H 1.09005 * 109.47318 * 119.99736 * 2 1 3 27 27 H 1.09000 * 109.46687 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46788 * 299.99493 * 5 3 2 29 29 H 1.09004 * 109.47182 * 59.99833 * 5 3 2 30 30 H 1.09000 * 109.46974 * 329.68606 * 10 9 8 31 31 H 1.09001 * 109.46547 * 209.68697 * 10 9 8 32 32 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 33 33 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 34 34 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 35 35 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 36 36 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5420 1.4442 0.1239 7 7 4.3844 0.8938 -0.7034 8 7 5.5852 1.0964 -0.2880 9 6 5.5493 1.7749 0.8236 10 6 6.7382 2.2165 1.6377 11 6 7.2012 3.5937 1.1583 12 6 8.4079 4.0423 1.9853 13 6 8.8644 5.3985 1.5127 14 1 8.3461 5.8910 0.7033 15 6 9.9445 6.0101 2.1130 16 7 10.5760 5.4102 3.0984 17 14 10.5100 7.6915 1.5279 18 1 9.4057 8.6704 1.6933 19 1 11.6812 8.1269 2.3303 20 1 10.8924 7.6142 0.0950 21 8 4.2580 2.0137 1.1079 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.9984 3.1542 -1.3072 28 1 2.0700 1.5874 -2.1491 29 1 0.5490 2.1252 -1.3970 30 1 7.5487 1.4980 1.5162 31 1 6.4574 2.2733 2.6894 32 1 6.3906 4.3123 1.2797 33 1 7.4820 3.5369 0.1066 34 1 8.1268 4.0991 3.0368 35 1 9.2186 3.3238 1.8642 36 1 11.3356 5.8406 3.5210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329310343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:37 Heat of formation + Delta-G solvation = -24.168227 kcal Electronic energy + Delta-G solvation = -16310.630886 eV Core-core repulsion = 13601.673094 eV Total energy + Delta-G solvation = -2708.957793 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.31437 -37.81817 -37.23654 -36.68740 -34.57369 -32.23413 -30.58977 -28.98010 -26.47140 -25.81475 -24.14704 -23.41925 -22.10570 -21.33467 -18.62984 -18.40341 -18.11774 -16.65714 -16.59089 -16.11320 -15.81538 -15.49265 -14.67999 -14.38232 -13.98955 -13.79762 -13.51629 -13.39016 -13.11233 -12.98200 -12.77889 -12.72293 -12.70619 -12.51351 -12.48382 -12.10969 -11.79376 -11.67126 -11.60552 -11.49461 -11.29916 -10.54919 -10.45848 -8.20801 -6.31240 0.09445 1.19495 1.27958 1.40688 1.42897 1.50967 2.40915 2.76224 3.12910 3.35428 3.64617 3.85876 3.99633 4.06600 4.15310 4.21014 4.28564 4.44578 4.49740 4.61919 4.68527 4.73620 4.88070 4.90257 4.94672 5.00208 5.10728 5.11936 5.15705 5.34223 5.47407 5.48628 5.69565 5.82846 6.22965 6.84045 7.22380 7.37609 8.90599 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.003813 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.612666 B = 7342.327523 C = 7569.322399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.007 3.993 4 H 0.120 0.880 5 C -0.143 4.143 6 C 0.164 3.836 7 N -0.313 5.313 8 N -0.322 5.322 9 C 0.179 3.821 10 C -0.019 4.019 11 C -0.091 4.091 12 C 0.027 3.973 13 C -0.548 4.548 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.270 1.270 21 O -0.230 6.230 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 -8.434 -4.296 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.013 4.013 4 H 0.138 0.862 5 C -0.201 4.201 6 C -0.048 4.048 7 N -0.158 5.158 8 N -0.168 5.168 9 C -0.032 4.032 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.010 4.010 13 C -0.586 4.586 14 H 0.074 0.926 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.195 1.195 21 O -0.110 6.110 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.183 -9.080 -5.214 22.737 hybrid contribution 0.525 1.394 0.857 1.718 sum -19.658 -7.686 -4.357 21.553 Atomic orbital electron populations 1.21803 0.92225 1.03083 1.03293 1.21567 0.98276 0.92453 1.02708 1.20174 0.77592 1.00711 1.02815 0.86173 1.21928 1.04097 0.99803 0.94266 1.28965 0.99670 0.92670 0.83495 1.74211 0.95158 1.21109 1.25352 1.74364 1.15227 1.17174 1.10034 1.28474 0.84158 0.95696 0.94846 1.20430 0.88281 0.98820 0.98178 1.21441 0.98576 0.93189 0.99782 1.18979 0.92333 0.95013 0.94696 1.21628 1.14343 1.04326 1.18299 0.92601 1.25903 0.96561 1.01959 0.95058 1.70061 1.21791 1.40195 1.24880 0.85554 0.77916 0.79439 0.78483 1.19220 1.20640 1.19478 1.84818 1.18768 1.61176 1.46221 0.90898 0.91495 0.91461 0.91453 0.92253 0.92848 0.92257 0.87327 0.86554 0.86924 0.92748 0.93175 0.97513 0.97844 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.59 16 2 C -0.11 -1.63 5.38 30.59 0.16 -1.47 16 3 C 0.01 0.12 2.86 -11.54 -0.03 0.09 16 4 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 5 C -0.14 -2.13 8.93 71.98 0.64 -1.48 16 6 C 0.16 4.58 6.99 88.34 0.62 5.20 16 7 N -0.31 -10.59 12.22 -165.51 -2.02 -12.61 16 8 N -0.32 -12.03 12.22 -165.50 -2.02 -14.05 16 9 C 0.18 6.15 7.73 88.34 0.68 6.83 16 10 C -0.02 -0.62 5.84 29.85 0.17 -0.45 16 11 C -0.09 -3.72 5.14 30.60 0.16 -3.56 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 14 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 O -0.23 -7.23 10.87 -3.62 -0.04 -7.27 16 22 H 0.07 0.49 6.56 -2.39 -0.02 0.47 16 23 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 0.92 6.57 -2.39 -0.02 0.90 16 30 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 31 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.90 306.57 3.22 -64.69 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.04 Total: 2.52 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.95 Total: -24.04 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.76 Total: -82.03 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.04 Total: -7.27 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.90 3.22 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329310343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.519 kcal (2) G-P(sol) polarization free energy of solvation -67.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds