Wall clock time and date at job start Sun Mar 29 2020 22:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00184 * 2 1 4 4 N 1.46898 * 109.47382 * 125.00035 * 3 2 1 5 5 C 1.46899 * 110.99971 * 194.09584 * 4 3 2 6 6 C 1.50707 * 109.47197 * 71.56326 * 5 4 3 7 7 H 1.07994 * 119.99846 * 5.05841 * 6 5 4 8 8 C 1.37879 * 119.99968 * 185.05119 * 6 5 4 9 9 N 1.31511 * 120.00160 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46909 * 60.00851 * 10 8 6 12 12 H 1.48496 * 109.46751 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47358 * 300.00521 * 10 8 6 14 14 C 1.46894 * 111.00228 * 70.13864 * 4 3 2 15 15 C 1.52995 * 109.47357 * 199.36026 * 14 4 3 16 16 H 1.09001 * 110.88671 * 309.76150 * 15 14 4 17 17 C 1.54685 * 111.08590 * 73.62312 * 15 14 4 18 18 N 1.46769 * 105.53646 * 143.37632 * 17 15 14 19 19 C 1.34421 * 111.29779 * 343.07843 * 18 17 15 20 20 O 1.21279 * 124.94352 * 180.43874 * 19 18 17 21 21 C 1.51283 * 110.11682 * 0.40856 * 19 18 17 22 22 H 1.08003 * 119.99884 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00282 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99884 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47205 * 4.99818 * 3 2 1 26 26 H 1.09007 * 109.46961 * 245.00081 * 3 2 1 27 27 H 1.08996 * 109.46939 * 191.56091 * 5 4 3 28 28 H 1.08995 * 109.47154 * 311.56519 * 5 4 3 29 29 H 0.96993 * 120.00362 * 179.97438 * 9 8 6 30 30 H 1.09006 * 109.46662 * 79.35891 * 14 4 3 31 31 H 1.09005 * 109.47202 * 319.36532 * 14 4 3 32 32 H 1.09001 * 110.13703 * 24.40160 * 17 15 14 33 33 H 1.08996 * 110.37151 * 262.47570 * 17 15 14 34 34 H 0.97000 * 124.35134 * 163.05319 * 18 17 15 35 35 H 1.08999 * 110.49057 * 134.93019 * 21 19 18 36 36 H 1.09002 * 110.48549 * 257.43958 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.5005 2.6916 1.3694 6 6 2.3986 3.5435 1.9451 7 1 1.4469 3.0986 2.1953 8 6 2.6057 4.8908 2.1524 9 7 3.7645 5.4326 1.8474 10 14 1.2396 5.9468 2.8654 11 1 0.8640 5.4311 4.2063 12 1 1.7113 7.3494 2.9883 13 1 0.0576 5.8993 1.9678 14 6 4.1031 0.3884 0.9285 15 6 4.7667 0.0794 2.2720 16 1 5.0064 0.9980 2.8074 17 6 3.8751 -0.8459 3.1332 18 7 4.8015 -1.7409 3.8368 19 6 6.0167 -1.7353 3.2623 20 8 6.9657 -2.3904 3.6380 21 6 6.0282 -0.7935 2.0784 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6213 1.4025 -0.9315 27 1 4.3344 2.6538 2.0702 28 1 3.8375 3.1221 0.4265 29 1 3.9101 6.3804 1.9928 30 1 4.8366 0.8304 0.2541 31 1 3.7182 -0.5337 0.4927 32 1 3.2056 -1.4224 2.4948 33 1 3.3001 -0.2593 3.8497 34 1 4.5670 -2.2683 4.6164 35 1 6.9257 -0.1751 2.0915 36 1 5.9654 -1.3532 1.1451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329895091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:31 Heat of formation + Delta-G solvation = -17.315770 kcal Electronic energy + Delta-G solvation = -17082.283193 eV Core-core repulsion = 14373.622545 eV Total energy + Delta-G solvation = -2708.660648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11006 -37.51147 -35.92081 -33.32195 -32.61800 -31.19038 -27.92472 -27.09063 -25.57895 -23.70626 -21.39523 -20.43712 -19.97526 -18.97064 -17.18875 -16.65275 -15.89718 -15.28046 -14.81361 -14.71507 -14.24006 -14.02999 -13.49709 -13.21927 -12.90379 -12.80798 -12.37755 -11.98511 -11.86315 -11.53760 -11.05900 -10.88660 -10.84952 -10.74255 -10.58587 -10.21820 -9.86763 -9.70338 -9.30258 -9.00568 -8.95737 -8.47434 -7.34733 -6.07510 -4.09245 2.64647 2.72144 3.29802 3.34816 3.37078 3.53642 4.36906 4.53989 4.63198 4.88390 5.17647 5.26286 5.28575 5.45503 5.54728 5.66862 5.76531 5.83671 5.86298 6.00189 6.07587 6.18919 6.22419 6.47462 6.50245 6.90856 6.95653 7.11462 7.13676 7.20976 7.27765 7.76095 8.01512 8.10004 8.36628 8.46370 8.99325 9.55635 11.02831 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.006841 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.469490 B = 4092.156083 C = 4894.812713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.063 3.937 15 C -0.091 4.091 16 H 0.100 0.900 17 C 0.115 3.885 18 N -0.733 5.733 19 C 0.520 3.480 20 O -0.550 6.550 21 C -0.154 4.154 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.030 0.970 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.100 0.900 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -10.838 -1.840 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.152 4.152 3 C -0.043 4.043 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.066 4.066 15 C -0.110 4.110 16 H 0.118 0.882 17 C -0.009 4.009 18 N -0.388 5.388 19 C 0.307 3.693 20 O -0.428 6.428 21 C -0.195 4.195 22 H 0.114 0.886 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.119 0.881 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.691 -11.049 -1.333 11.257 hybrid contribution -0.437 0.757 0.032 0.875 sum -2.128 -10.292 -1.301 10.589 Atomic orbital electron populations 1.23717 0.95999 1.01246 1.02796 1.22997 0.95874 0.98416 0.97934 1.21149 0.95975 0.95355 0.91776 1.62132 1.14808 1.10187 1.38426 1.19798 0.95911 0.81930 0.95781 1.21112 0.99648 0.92446 1.41445 0.91859 1.24983 0.95705 0.98003 0.95838 1.69935 1.22894 1.12506 1.48441 0.86591 0.82073 0.79206 0.79717 1.20200 1.21414 1.20297 1.22042 0.93519 0.97020 0.94042 1.22200 0.92783 0.98405 0.97618 0.88190 1.22141 0.91659 0.91121 0.95964 1.46373 1.12757 1.47062 1.32588 1.20968 0.82117 0.81779 0.84421 1.90715 1.37743 1.46352 1.68014 1.22405 1.00899 0.98301 0.97851 0.88574 0.89308 0.88391 0.89165 0.95310 0.95196 0.98615 0.92839 0.94728 0.91714 0.91135 0.89569 0.75685 0.88135 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.67 14.32 29.01 0.42 -2.25 16 2 C -0.13 -1.91 9.24 -36.03 -0.33 -2.25 16 3 C 0.09 1.48 5.25 -4.98 -0.03 1.46 16 4 N -0.53 -9.93 4.31 -237.52 -1.02 -10.95 16 5 C 0.19 4.51 4.55 -4.97 -0.02 4.49 16 6 C -0.51 -13.34 8.32 -34.44 -0.29 -13.62 16 7 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 8 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 10 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.06 0.95 4.14 -3.83 -0.02 0.93 16 15 C -0.09 -1.28 3.20 -88.88 -0.28 -1.56 16 16 H 0.10 1.65 6.66 -51.93 -0.35 1.31 16 17 C 0.11 1.46 7.32 -3.01 -0.02 1.43 16 18 N -0.73 -9.17 6.24 -59.09 -0.37 -9.54 16 19 C 0.52 7.73 8.43 -10.86 -0.09 7.64 16 20 O -0.55 -10.15 18.03 5.56 0.10 -10.05 16 21 C -0.15 -1.98 6.41 -26.74 -0.17 -2.15 16 22 H 0.10 1.33 7.84 -52.48 -0.41 0.92 16 23 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 24 H 0.10 1.24 6.95 -52.48 -0.36 0.88 16 25 H 0.09 1.78 6.78 -51.93 -0.35 1.42 16 26 H 0.03 0.49 8.08 -51.92 -0.42 0.08 16 27 H 0.03 0.75 6.48 -51.93 -0.34 0.41 16 28 H 0.00 -0.10 8.06 -51.93 -0.42 -0.52 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 31 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 32 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 4.33 8.96 -40.82 -0.37 3.96 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -29.96 299.37 -7.37 -37.33 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.37 Total: 2.21 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.94 Total: -4.46 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.65 Total: -45.40 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.10 Total: -10.05 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.96 -7.37 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329895091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.012 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds