Wall clock time and date at job start Sun Mar 29 2020 22:36:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50699 * 120.00184 * 2 1
4 4 N 1.46898 * 109.47382 * 125.00035 * 3 2 1
5 5 C 1.46899 * 110.99971 * 194.09584 * 4 3 2
6 6 C 1.50707 * 109.47197 * 71.56326 * 5 4 3
7 7 H 1.07994 * 119.99846 * 5.05841 * 6 5 4
8 8 C 1.37879 * 119.99968 * 185.05119 * 6 5 4
9 9 N 1.31511 * 120.00160 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 119.99751 * 179.97438 * 8 6 5
11 11 H 1.48498 * 109.46909 * 60.00851 * 10 8 6
12 12 H 1.48496 * 109.46751 * 180.02562 * 10 8 6
13 13 H 1.48496 * 109.47358 * 300.00521 * 10 8 6
14 14 C 1.46894 * 111.00228 * 70.13864 * 4 3 2
15 15 C 1.52995 * 109.47357 * 199.36026 * 14 4 3
16 16 H 1.09001 * 110.88671 * 309.76150 * 15 14 4
17 17 C 1.54685 * 111.08590 * 73.62312 * 15 14 4
18 18 N 1.46769 * 105.53646 * 143.37632 * 17 15 14
19 19 C 1.34421 * 111.29779 * 343.07843 * 18 17 15
20 20 O 1.21279 * 124.94352 * 180.43874 * 19 18 17
21 21 C 1.51283 * 110.11682 * 0.40856 * 19 18 17
22 22 H 1.08003 * 119.99884 * 0.02562 * 1 2 3
23 23 H 1.07999 * 120.00282 * 180.02562 * 1 2 3
24 24 H 1.08003 * 119.99884 * 179.97438 * 2 1 3
25 25 H 1.09007 * 109.47205 * 4.99818 * 3 2 1
26 26 H 1.09007 * 109.46961 * 245.00081 * 3 2 1
27 27 H 1.08996 * 109.46939 * 191.56091 * 5 4 3
28 28 H 1.08995 * 109.47154 * 311.56519 * 5 4 3
29 29 H 0.96993 * 120.00362 * 179.97438 * 9 8 6
30 30 H 1.09006 * 109.46662 * 79.35891 * 14 4 3
31 31 H 1.09005 * 109.47202 * 319.36532 * 14 4 3
32 32 H 1.09001 * 110.13703 * 24.40160 * 17 15 14
33 33 H 1.08996 * 110.37151 * 262.47570 * 17 15 14
34 34 H 0.97000 * 124.35134 * 163.05319 * 18 17 15
35 35 H 1.08999 * 110.49057 * 134.93019 * 21 19 18
36 36 H 1.09002 * 110.48549 * 257.43958 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9963 1.3320 1.1345
5 6 3.5005 2.6916 1.3694
6 6 2.3986 3.5435 1.9451
7 1 1.4469 3.0986 2.1953
8 6 2.6057 4.8908 2.1524
9 7 3.7645 5.4326 1.8474
10 14 1.2396 5.9468 2.8654
11 1 0.8640 5.4311 4.2063
12 1 1.7113 7.3494 2.9883
13 1 0.0576 5.8993 1.9678
14 6 4.1031 0.3884 0.9285
15 6 4.7667 0.0794 2.2720
16 1 5.0064 0.9980 2.8074
17 6 3.8751 -0.8459 3.1332
18 7 4.8015 -1.7409 3.8368
19 6 6.0167 -1.7353 3.2623
20 8 6.9657 -2.3904 3.6380
21 6 6.0282 -0.7935 2.0784
22 1 -0.5400 0.9353 -0.0004
23 1 -0.5400 -0.9353 0.0004
24 1 1.8500 -0.9353 0.0004
25 1 1.3586 2.1317 0.0895
26 1 2.6213 1.4025 -0.9315
27 1 4.3344 2.6538 2.0702
28 1 3.8375 3.1221 0.4265
29 1 3.9101 6.3804 1.9928
30 1 4.8366 0.8304 0.2541
31 1 3.7182 -0.5337 0.4927
32 1 3.2056 -1.4224 2.4948
33 1 3.3001 -0.2593 3.8497
34 1 4.5670 -2.2683 4.6164
35 1 6.9257 -0.1751 2.0915
36 1 5.9654 -1.3532 1.1451
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329895091.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:36:31
Heat of formation + Delta-G solvation = -17.315770 kcal
Electronic energy + Delta-G solvation = -17082.283193 eV
Core-core repulsion = 14373.622545 eV
Total energy + Delta-G solvation = -2708.660648 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.11006 -37.51147 -35.92081 -33.32195 -32.61800 -31.19038 -27.92472 -27.09063
-25.57895 -23.70626 -21.39523 -20.43712 -19.97526 -18.97064 -17.18875 -16.65275
-15.89718 -15.28046 -14.81361 -14.71507 -14.24006 -14.02999 -13.49709 -13.21927
-12.90379 -12.80798 -12.37755 -11.98511 -11.86315 -11.53760 -11.05900 -10.88660
-10.84952 -10.74255 -10.58587 -10.21820 -9.86763 -9.70338 -9.30258 -9.00568
-8.95737 -8.47434 -7.34733 -6.07510 -4.09245 2.64647 2.72144 3.29802
3.34816 3.37078 3.53642 4.36906 4.53989 4.63198 4.88390 5.17647
5.26286 5.28575 5.45503 5.54728 5.66862 5.76531 5.83671 5.86298
6.00189 6.07587 6.18919 6.22419 6.47462 6.50245 6.90856 6.95653
7.11462 7.13676 7.20976 7.27765 7.76095 8.01512 8.10004 8.36628
8.46370 8.99325 9.55635 11.02831
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.020308 B = 0.006841 C = 0.005719
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1378.469490 B = 4092.156083 C = 4894.812713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.134 4.134
3 C 0.085 3.915
4 N -0.531 5.531
5 C 0.191 3.809
6 C -0.508 4.508
7 H 0.063 0.937
8 C 0.056 3.944
9 N -0.898 5.898
10 Si 0.896 3.104
11 H -0.276 1.276
12 H -0.288 1.288
13 H -0.277 1.277
14 C 0.063 3.937
15 C -0.091 4.091
16 H 0.100 0.900
17 C 0.115 3.885
18 N -0.733 5.733
19 C 0.520 3.480
20 O -0.550 6.550
21 C -0.154 4.154
22 H 0.096 0.904
23 H 0.089 0.911
24 H 0.098 0.902
25 H 0.090 0.910
26 H 0.029 0.971
27 H 0.030 0.970
28 H -0.004 1.004
29 H 0.262 0.738
30 H 0.035 0.965
31 H 0.064 0.936
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.405 0.595
35 H 0.100 0.900
36 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.057 -10.838 -1.840 11.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.152 4.152
3 C -0.043 4.043
4 N -0.256 5.256
5 C 0.066 3.934
6 C -0.547 4.547
7 H 0.081 0.919
8 C -0.145 4.145
9 N -0.538 5.538
10 Si 0.724 3.276
11 H -0.202 1.202
12 H -0.214 1.214
13 H -0.203 1.203
14 C -0.066 4.066
15 C -0.110 4.110
16 H 0.118 0.882
17 C -0.009 4.009
18 N -0.388 5.388
19 C 0.307 3.693
20 O -0.428 6.428
21 C -0.195 4.195
22 H 0.114 0.886
23 H 0.107 0.893
24 H 0.116 0.884
25 H 0.108 0.892
26 H 0.047 0.953
27 H 0.048 0.952
28 H 0.014 0.986
29 H 0.072 0.928
30 H 0.053 0.947
31 H 0.083 0.917
32 H 0.089 0.911
33 H 0.104 0.896
34 H 0.243 0.757
35 H 0.119 0.881
36 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -1.691 -11.049 -1.333 11.257
hybrid contribution -0.437 0.757 0.032 0.875
sum -2.128 -10.292 -1.301 10.589
Atomic orbital electron populations
1.23717 0.95999 1.01246 1.02796 1.22997 0.95874 0.98416 0.97934
1.21149 0.95975 0.95355 0.91776 1.62132 1.14808 1.10187 1.38426
1.19798 0.95911 0.81930 0.95781 1.21112 0.99648 0.92446 1.41445
0.91859 1.24983 0.95705 0.98003 0.95838 1.69935 1.22894 1.12506
1.48441 0.86591 0.82073 0.79206 0.79717 1.20200 1.21414 1.20297
1.22042 0.93519 0.97020 0.94042 1.22200 0.92783 0.98405 0.97618
0.88190 1.22141 0.91659 0.91121 0.95964 1.46373 1.12757 1.47062
1.32588 1.20968 0.82117 0.81779 0.84421 1.90715 1.37743 1.46352
1.68014 1.22405 1.00899 0.98301 0.97851 0.88574 0.89308 0.88391
0.89165 0.95310 0.95196 0.98615 0.92839 0.94728 0.91714 0.91135
0.89569 0.75685 0.88135 0.88068
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.67 14.32 29.01 0.42 -2.25 16
2 C -0.13 -1.91 9.24 -36.03 -0.33 -2.25 16
3 C 0.09 1.48 5.25 -4.98 -0.03 1.46 16
4 N -0.53 -9.93 4.31 -237.52 -1.02 -10.95 16
5 C 0.19 4.51 4.55 -4.97 -0.02 4.49 16
6 C -0.51 -13.34 8.32 -34.44 -0.29 -13.62 16
7 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16
8 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16
9 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16
10 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16
11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
14 C 0.06 0.95 4.14 -3.83 -0.02 0.93 16
15 C -0.09 -1.28 3.20 -88.88 -0.28 -1.56 16
16 H 0.10 1.65 6.66 -51.93 -0.35 1.31 16
17 C 0.11 1.46 7.32 -3.01 -0.02 1.43 16
18 N -0.73 -9.17 6.24 -59.09 -0.37 -9.54 16
19 C 0.52 7.73 8.43 -10.86 -0.09 7.64 16
20 O -0.55 -10.15 18.03 5.56 0.10 -10.05 16
21 C -0.15 -1.98 6.41 -26.74 -0.17 -2.15 16
22 H 0.10 1.33 7.84 -52.48 -0.41 0.92 16
23 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16
24 H 0.10 1.24 6.95 -52.48 -0.36 0.88 16
25 H 0.09 1.78 6.78 -51.93 -0.35 1.42 16
26 H 0.03 0.49 8.08 -51.92 -0.42 0.08 16
27 H 0.03 0.75 6.48 -51.93 -0.34 0.41 16
28 H 0.00 -0.10 8.06 -51.93 -0.42 -0.52 16
29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
30 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16
31 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16
32 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16
33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16
34 H 0.41 4.33 8.96 -40.82 -0.37 3.96 16
35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16
36 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16
LS Contribution 299.37 15.07 4.51 4.51
Total: -1.00 -29.96 299.37 -7.37 -37.33
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: -5.37 Total: 2.21 kcal
Atomic # 6 Polarization: -3.53 SS G_CDS: -0.94 Total: -4.46 kcal
Atomic # 7 Polarization: -44.75 SS G_CDS: -0.65 Total: -45.40 kcal
Atomic # 8 Polarization: -10.15 SS G_CDS: 0.10 Total: -10.05 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -29.96 -7.37 -37.33 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329895091.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.012 kcal
(2) G-P(sol) polarization free energy of solvation -29.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds