Wall clock time and date at job start Sun Mar 29 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00184 * 2 1 4 4 N 1.46898 * 109.47382 * 125.00035 * 3 2 1 5 5 C 1.46899 * 110.99971 * 194.09584 * 4 3 2 6 6 C 1.50707 * 109.47197 * 71.56326 * 5 4 3 7 7 H 1.07994 * 119.99846 * 5.05841 * 6 5 4 8 8 C 1.37879 * 119.99968 * 185.05119 * 6 5 4 9 9 N 1.31511 * 120.00160 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46909 * 60.00851 * 10 8 6 12 12 H 1.48496 * 109.46751 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47358 * 300.00521 * 10 8 6 14 14 C 1.46894 * 111.00228 * 70.13864 * 4 3 2 15 15 C 1.52995 * 109.47357 * 199.36026 * 14 4 3 16 16 H 1.09001 * 110.88671 * 309.76150 * 15 14 4 17 17 C 1.54685 * 111.08590 * 73.62312 * 15 14 4 18 18 N 1.46769 * 105.53646 * 143.37632 * 17 15 14 19 19 C 1.34421 * 111.29779 * 343.07843 * 18 17 15 20 20 O 1.21279 * 124.94352 * 180.43874 * 19 18 17 21 21 C 1.51283 * 110.11682 * 0.40856 * 19 18 17 22 22 H 1.08003 * 119.99884 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00282 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99884 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47205 * 4.99818 * 3 2 1 26 26 H 1.09007 * 109.46961 * 245.00081 * 3 2 1 27 27 H 1.08996 * 109.46939 * 191.56091 * 5 4 3 28 28 H 1.08995 * 109.47154 * 311.56519 * 5 4 3 29 29 H 0.96993 * 120.00362 * 179.97438 * 9 8 6 30 30 H 1.09006 * 109.46662 * 79.35891 * 14 4 3 31 31 H 1.09005 * 109.47202 * 319.36532 * 14 4 3 32 32 H 1.09001 * 110.13703 * 24.40160 * 17 15 14 33 33 H 1.08996 * 110.37151 * 262.47570 * 17 15 14 34 34 H 0.97000 * 124.35134 * 163.05319 * 18 17 15 35 35 H 1.08999 * 110.49057 * 134.93019 * 21 19 18 36 36 H 1.09002 * 110.48549 * 257.43958 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.5005 2.6916 1.3694 6 6 2.3986 3.5435 1.9451 7 1 1.4469 3.0986 2.1953 8 6 2.6057 4.8908 2.1524 9 7 3.7645 5.4326 1.8474 10 14 1.2396 5.9468 2.8654 11 1 0.8640 5.4311 4.2063 12 1 1.7113 7.3494 2.9883 13 1 0.0576 5.8993 1.9678 14 6 4.1031 0.3884 0.9285 15 6 4.7667 0.0794 2.2720 16 1 5.0064 0.9980 2.8074 17 6 3.8751 -0.8459 3.1332 18 7 4.8015 -1.7409 3.8368 19 6 6.0167 -1.7353 3.2623 20 8 6.9657 -2.3904 3.6380 21 6 6.0282 -0.7935 2.0784 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6213 1.4025 -0.9315 27 1 4.3344 2.6538 2.0702 28 1 3.8375 3.1221 0.4265 29 1 3.9101 6.3804 1.9928 30 1 4.8366 0.8304 0.2541 31 1 3.7182 -0.5337 0.4927 32 1 3.2056 -1.4224 2.4948 33 1 3.3001 -0.2593 3.8497 34 1 4.5670 -2.2683 4.6164 35 1 6.9257 -0.1751 2.0915 36 1 5.9654 -1.3532 1.1451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329895091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:30 Heat of formation + Delta-G solvation = -38.793801 kcal Electronic energy + Delta-G solvation = -17083.214550 eV Core-core repulsion = 14373.622545 eV Total energy + Delta-G solvation = -2709.592005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27293 -38.92279 -37.19949 -34.93896 -34.14584 -32.48886 -29.43391 -28.56439 -26.81200 -25.40211 -22.89503 -21.54737 -21.24127 -20.19355 -18.55671 -18.33821 -17.20549 -16.75272 -16.41871 -15.87377 -15.64422 -15.51235 -14.81442 -14.41678 -14.35991 -13.97143 -13.90914 -13.53340 -13.16373 -13.13172 -12.62090 -12.59890 -12.23734 -12.15061 -11.95988 -11.85904 -11.40404 -11.17969 -10.91076 -10.54568 -10.17543 -10.05062 -8.91722 -8.15250 -6.23901 1.43778 1.45215 1.52722 1.54681 1.56149 2.43257 2.49097 3.17761 3.28156 3.48443 3.72699 3.93177 4.13338 4.25579 4.41358 4.57723 4.60233 4.69054 4.77591 4.82301 4.85714 4.99748 5.08599 5.14205 5.27039 5.34141 5.37649 5.72104 5.84082 5.85579 6.03816 6.09151 6.14955 6.40767 6.70326 6.93632 7.26257 7.45763 8.94558 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.006841 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.469490 B = 4092.156083 C = 4894.812713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.062 0.938 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.269 1.269 14 C 0.065 3.935 15 C -0.089 4.089 16 H 0.069 0.931 17 C 0.122 3.878 18 N -0.720 5.720 19 C 0.517 3.483 20 O -0.590 6.590 21 C -0.144 4.144 22 H 0.084 0.916 23 H 0.118 0.882 24 H 0.125 0.875 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.012 0.988 28 H -0.037 1.037 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.100 0.900 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -12.426 -1.949 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.161 4.161 3 C -0.042 4.042 4 N -0.254 5.254 5 C 0.080 3.920 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.785 3.215 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.194 1.194 14 C -0.064 4.064 15 C -0.108 4.108 16 H 0.088 0.912 17 C -0.002 4.002 18 N -0.374 5.374 19 C 0.304 3.696 20 O -0.472 6.472 21 C -0.185 4.185 22 H 0.103 0.897 23 H 0.137 0.863 24 H 0.142 0.858 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.030 0.970 28 H -0.019 1.019 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.118 0.882 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.294 -12.655 -1.438 13.156 hybrid contribution 0.008 1.234 0.037 1.234 sum -3.287 -11.422 -1.401 11.967 Atomic orbital electron populations 1.23919 0.95776 1.02160 1.00715 1.22877 0.96092 0.97370 0.99724 1.21109 0.95351 0.96605 0.91154 1.62045 1.16004 1.07857 1.39532 1.19426 0.94689 0.84487 0.93421 1.21444 1.00067 0.93042 1.40828 0.91989 1.25815 0.97870 0.99472 0.96328 1.70062 1.24878 1.12735 1.49897 0.85576 0.79369 0.77308 0.79218 1.19438 1.21359 1.19399 1.22133 0.92423 0.97190 0.94609 1.22047 0.93872 0.97761 0.97137 0.91236 1.22109 0.91280 0.90925 0.95864 1.46318 1.12050 1.46457 1.32563 1.21220 0.82062 0.81518 0.84783 1.90699 1.39086 1.48145 1.69230 1.22366 1.00100 0.97758 0.98248 0.89717 0.86350 0.85754 0.92210 0.95438 0.96999 1.01946 0.92924 0.95342 0.88382 0.88968 0.90117 0.74518 0.88155 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.44 14.32 67.78 0.97 -3.47 16 2 C -0.14 -3.66 9.24 25.65 0.24 -3.42 16 3 C 0.09 2.92 5.25 85.56 0.45 3.37 16 4 N -0.53 -19.60 4.31 -905.37 -3.90 -23.49 16 5 C 0.21 10.04 4.55 85.56 0.39 10.43 16 6 C -0.52 -27.52 8.32 25.60 0.21 -27.31 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.17 5.46 84.66 0.46 0.63 16 9 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 10 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.06 1.85 4.14 86.30 0.36 2.21 16 15 C -0.09 -2.40 3.20 -9.67 -0.03 -2.43 16 16 H 0.07 2.34 6.66 -2.39 -0.02 2.32 16 17 C 0.12 2.80 7.32 86.90 0.64 3.44 16 18 N -0.72 -16.56 6.24 -459.44 -2.87 -19.42 16 19 C 0.52 14.59 8.43 87.90 0.74 15.33 16 20 O -0.59 -21.34 18.03 -3.03 -0.05 -21.40 16 21 C -0.14 -3.47 6.41 30.59 0.20 -3.27 16 22 H 0.08 2.19 7.84 -2.91 -0.02 2.17 16 23 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 24 H 0.12 2.57 6.95 -2.91 -0.02 2.55 16 25 H 0.06 2.38 6.78 -2.38 -0.02 2.37 16 26 H 0.03 0.94 8.08 -2.38 -0.02 0.92 16 27 H 0.01 0.62 6.48 -2.39 -0.02 0.61 16 28 H -0.04 -2.03 8.06 -2.39 -0.02 -2.05 16 29 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.03 0.86 8.00 -2.38 -0.02 0.84 16 31 H 0.10 2.18 6.17 -2.38 -0.01 2.17 16 32 H 0.09 1.80 7.73 -2.39 -0.02 1.78 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.42 8.02 8.96 -92.71 -0.83 7.19 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.13 2.43 7.90 -2.39 -0.02 2.42 16 Total: -1.00 -65.62 299.37 0.35 -65.27 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.23 Total: 12.91 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.62 Total: -4.50 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.48 Total: -97.32 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.62 0.35 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329895091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.475 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds