Wall clock time and date at job start Sun Mar 29 2020 22:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53007 * 115.55239 * 325.66839 * 3 2 1 5 5 C 1.53001 * 117.50020 * 111.37939 * 3 2 1 6 6 C 1.53003 * 60.00141 * 107.48942 * 5 3 2 7 7 H 1.08997 * 117.51866 * 107.47833 * 6 5 3 8 8 N 1.46900 * 117.49751 * 252.51628 * 6 5 3 9 9 C 1.46908 * 110.99509 * 223.62291 * 8 6 5 10 10 C 1.52997 * 109.46699 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47711 * 54.99907 * 10 9 8 12 12 C 1.47204 * 109.47142 * 294.99226 * 10 9 8 13 13 N 5.95870 * 154.38151 * 132.28284 * 2 1 3 14 14 C 1.53004 * 109.47070 * 175.00094 * 10 9 8 15 15 C 1.50701 * 109.47211 * 185.00010 * 14 10 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 10 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 10 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 H 1.09007 * 109.47384 * 59.99897 * 1 2 3 24 24 H 1.08997 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47320 * 299.99870 * 1 2 3 26 26 H 1.08998 * 109.46836 * 274.33543 * 4 3 2 27 27 H 1.09004 * 109.46702 * 34.32830 * 4 3 2 28 28 H 1.09001 * 109.47194 * 154.32953 * 4 3 2 29 29 H 1.08996 * 117.49733 * 359.97438 * 5 3 2 30 30 H 1.09001 * 117.49910 * 214.98146 * 5 3 2 31 31 H 1.00891 * 111.00117 * 99.66837 * 8 6 5 32 32 H 1.08999 * 109.47398 * 59.99600 * 9 8 6 33 33 H 1.09000 * 109.46928 * 299.99701 * 9 8 6 34 34 H 1.09000 * 109.47211 * 64.99037 * 14 10 9 35 35 H 1.09007 * 109.46376 * 304.99579 * 14 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2372 2.3720 -0.7785 5 6 2.7495 1.7496 1.2637 6 6 3.5374 1.3988 0.0000 7 1 3.9913 2.2200 -0.5547 8 7 4.2938 0.1396 -0.0001 9 6 5.6305 0.3285 -0.5796 10 6 6.3861 -1.0018 -0.5630 11 1 5.7947 -1.7621 -1.0731 12 6 6.6207 -1.4154 0.8301 13 7 6.8019 -1.7334 1.9061 14 6 7.7283 -0.8349 -1.2782 15 6 8.4183 -2.1715 -1.3701 16 1 7.9468 -3.0519 -0.9590 17 6 9.6541 -2.2693 -1.9733 18 7 10.2285 -1.1971 -2.4736 19 14 10.5129 -3.9248 -2.0802 20 1 9.6644 -4.8741 -2.8446 21 1 11.8177 -3.7619 -2.7702 22 1 10.7390 -4.4545 -0.7115 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5279 2.3374 -1.8285 27 1 0.1675 2.1816 -0.6912 28 1 1.4656 3.3566 -0.3705 29 1 2.7922 1.0462 2.0953 30 1 2.6851 2.8018 1.5409 31 1 3.7883 -0.5859 -0.4858 32 1 6.1795 1.0660 0.0058 33 1 5.5346 0.6786 -1.6074 34 1 8.3546 -0.1403 -0.7182 35 1 7.5591 -0.4436 -2.2815 36 1 11.0981 -1.2659 -2.8977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336847455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:30 Heat of formation + Delta-G solvation = -19.651169 kcal Electronic energy + Delta-G solvation = -16437.842507 eV Core-core repulsion = 13729.080589 eV Total energy + Delta-G solvation = -2708.761918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23690 -38.54200 -36.76222 -35.64894 -34.60705 -32.41645 -29.51264 -28.02039 -27.35808 -24.49339 -23.48957 -22.18646 -21.17813 -18.66644 -18.39947 -17.55947 -16.66883 -16.55757 -16.08069 -15.64495 -15.31891 -15.02041 -14.83472 -14.25266 -14.14157 -13.85397 -13.72763 -13.45495 -13.12770 -12.96111 -12.92264 -12.68528 -12.47000 -12.41280 -12.18951 -11.91936 -11.87151 -11.43698 -11.32229 -11.13513 -10.54274 -10.00354 -9.16974 -8.18818 -6.27074 1.41551 1.43376 1.50462 2.05340 2.12657 2.42160 2.48981 2.95240 3.10705 3.16625 3.34001 3.81268 4.05572 4.13611 4.26062 4.33492 4.49288 4.55014 4.59003 4.75635 4.77636 4.82844 4.87560 4.89678 4.95055 4.99585 5.11248 5.22004 5.46917 5.62468 5.79540 6.06209 6.21736 6.34858 6.50237 6.82989 6.92569 7.41386 8.91957 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.004414 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.090239 B = 6341.711631 C = 6431.484015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.031 3.969 4 C -0.140 4.140 5 C -0.191 4.191 6 C 0.034 3.966 7 H 0.124 0.876 8 N -0.672 5.672 9 C 0.081 3.919 10 C 0.019 3.981 11 H 0.117 0.883 12 C 0.265 3.735 13 N -0.516 5.516 14 C 0.039 3.961 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.282 1.282 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.353 0.647 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.002 0.998 35 H 0.038 0.962 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.962 8.398 -0.443 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.229 4.229 6 C -0.077 4.077 7 H 0.142 0.858 8 N -0.304 5.304 9 C -0.049 4.049 10 C -0.002 4.002 11 H 0.135 0.865 12 C -0.051 4.051 13 N -0.194 5.194 14 C 0.000 4.000 15 C -0.579 4.579 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.208 1.208 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.174 0.826 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.214 7.857 1.722 20.829 hybrid contribution 0.511 -0.643 -1.097 1.370 sum -18.703 7.214 0.625 20.056 Atomic orbital electron populations 1.22968 0.79589 1.03560 1.01062 1.87851 1.21490 1.25468 1.94494 1.22445 0.92517 0.85707 1.00373 1.21841 1.00650 0.97020 1.00234 1.23900 1.03931 1.02305 0.92806 1.22950 0.89332 0.94044 1.01336 0.85833 1.59984 1.03119 1.07591 1.59727 1.21947 0.88575 0.94899 0.99496 1.19198 0.99623 0.98628 0.82791 0.86519 1.29422 0.89913 0.91010 0.94739 1.80988 1.12191 1.11495 1.14683 1.18986 0.89370 0.96044 0.95575 1.21529 1.03806 0.95232 1.37376 0.92891 1.25695 0.98072 0.99699 0.95155 1.70019 1.16955 1.29950 1.39358 0.85756 0.78141 0.80661 0.78058 1.18744 1.20599 1.20782 0.91967 0.88909 0.93438 0.90905 0.90088 0.89622 0.90328 0.86410 0.82645 0.90936 0.91012 0.97983 0.94390 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.05 113.37 1.14 1.50 16 2 O -0.37 -8.59 10.16 -148.98 -1.51 -10.10 16 3 C 0.03 0.61 3.01 -10.79 -0.03 0.57 16 4 C -0.14 -1.79 9.49 71.98 0.68 -1.10 16 5 C -0.19 -4.10 10.05 30.60 0.31 -3.79 16 6 C 0.03 0.77 5.98 44.92 0.27 1.03 16 7 H 0.12 2.36 7.90 -2.39 -0.02 2.34 16 8 N -0.67 -18.72 6.38 -491.54 -3.14 -21.86 16 9 C 0.08 2.38 4.90 86.30 0.42 2.80 16 10 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 11 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 12 C 0.27 11.51 13.67 89.44 1.22 12.73 16 13 N -0.52 -24.51 18.54 20.01 0.37 -24.14 16 14 C 0.04 1.83 4.42 29.85 0.13 1.96 16 15 C -0.54 -29.11 8.60 25.60 0.22 -28.89 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.71 5.46 84.65 0.46 1.17 16 18 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 19 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H 0.06 0.72 6.47 -2.38 -0.02 0.70 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.84 5.78 -2.38 -0.01 0.83 16 28 H 0.08 0.86 7.90 -2.39 -0.02 0.84 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.12 1.94 8.05 -2.39 -0.02 1.93 16 31 H 0.35 9.69 8.05 -89.70 -0.72 8.97 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.27 310.53 3.17 -63.09 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.34 Total: 11.47 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.80 Total: -11.33 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.48 Total: -99.01 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.51 Total: -10.10 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.27 3.17 -63.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds