Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 113.99781 * 2 1 4 4 C 1.52995 * 115.56608 * 325.68974 * 3 2 1 5 5 C 1.53004 * 117.49725 * 111.38171 * 3 2 1 6 6 C 1.52996 * 60.00011 * 107.48487 * 5 3 2 7 7 H 1.09005 * 117.51530 * 107.48601 * 6 5 3 8 8 N 1.46897 * 117.49833 * 252.50573 * 6 5 3 9 9 C 1.46902 * 111.00151 * 223.62458 * 8 6 5 10 10 C 1.52999 * 109.47028 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47018 * 305.00032 * 10 9 8 12 12 C 1.47205 * 109.47362 * 65.00037 * 10 9 8 13 13 N 5.09748 * 137.50091 * 218.27644 * 2 1 3 14 14 C 1.53006 * 109.47054 * 184.99888 * 10 9 8 15 15 C 1.50698 * 109.47184 * 174.99717 * 14 10 9 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 10 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.08997 * 109.46960 * 299.99940 * 1 2 3 24 24 H 1.08997 * 109.46647 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47334 * 274.31297 * 4 3 2 27 27 H 1.08997 * 109.47025 * 34.31027 * 4 3 2 28 28 H 1.08995 * 109.47309 * 154.31339 * 4 3 2 29 29 H 1.09003 * 117.49868 * 359.97438 * 5 3 2 30 30 H 1.08998 * 117.49569 * 214.97984 * 5 3 2 31 31 H 1.00902 * 111.00171 * 347.58134 * 8 6 5 32 32 H 1.08997 * 109.46829 * 60.00184 * 9 8 6 33 33 H 1.09003 * 109.47353 * 300.00251 * 9 8 6 34 34 H 1.08998 * 109.46509 * 55.00315 * 14 10 9 35 35 H 1.08993 * 109.46955 * 294.99875 * 14 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2373 2.3722 -0.7780 5 6 2.7496 1.7495 1.2638 6 6 3.5374 1.3987 0.0000 7 1 3.9915 2.2200 -0.5545 8 7 4.2939 0.1396 0.0001 9 6 5.6305 0.3284 -0.5795 10 6 6.3862 -1.0018 -0.5628 11 1 6.4048 -1.3964 0.4531 12 6 5.7093 -1.9620 -1.4498 13 7 5.1874 -2.7035 -2.1333 14 6 7.8195 -0.7803 -1.0503 15 6 8.5991 -2.0632 -0.9180 16 1 8.1200 -2.9482 -0.5260 17 6 9.9235 -2.1074 -1.2985 18 7 10.5068 -1.0299 -1.7764 19 14 10.8896 -3.6979 -1.1353 20 1 12.2808 -3.4828 -1.6083 21 1 10.2452 -4.7549 -1.9556 22 1 10.9109 -4.1203 0.2882 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.5279 2.3382 -1.8280 27 1 0.1676 2.1819 -0.6907 28 1 1.4657 3.3566 -0.3695 29 1 2.7923 1.0461 2.0953 30 1 2.6852 2.8017 1.5409 31 1 4.3545 -0.2459 0.9306 32 1 6.1795 1.0659 0.0059 33 1 5.5347 0.6786 -1.6073 34 1 8.2921 -0.0043 -0.4481 35 1 7.8041 -0.4705 -2.0951 36 1 10.0050 -0.2041 -1.8615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336847477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = -0.864708 kcal Electronic energy + Delta-G solvation = -16491.265595 eV Core-core repulsion = 13783.318319 eV Total energy + Delta-G solvation = -2707.947276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35215 -37.18045 -35.67996 -34.12495 -33.13984 -30.80801 -28.64231 -26.65993 -25.76651 -22.82729 -22.09501 -21.62330 -20.25381 -17.29981 -16.88883 -16.39519 -15.74841 -15.16218 -14.72630 -14.33507 -13.96177 -13.73982 -13.49653 -13.41763 -13.08757 -12.42227 -12.26426 -12.12740 -12.09188 -11.74801 -11.44380 -11.31908 -11.10097 -11.05113 -10.71532 -10.50033 -10.34267 -10.13750 -9.88324 -9.20759 -8.64715 -8.39264 -8.10965 -6.41682 -4.12519 3.44390 3.47524 3.47816 3.64782 3.67227 3.73762 3.83751 4.00970 4.52384 4.57874 4.78830 4.80115 4.93326 5.16111 5.23457 5.25789 5.37062 5.38788 5.48142 5.54697 5.55739 5.60535 5.67517 5.75402 5.83925 5.93257 6.29837 6.36524 7.00368 7.10745 7.26158 7.26940 7.44457 8.05543 8.37509 8.59667 8.81079 9.58503 10.99177 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044138 B = 0.004500 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.223016 B = 6220.780360 C = 6545.864251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.331 6.331 3 C 0.043 3.957 4 C -0.144 4.144 5 C -0.221 4.221 6 C 0.054 3.946 7 H 0.117 0.883 8 N -0.650 5.650 9 C 0.066 3.934 10 C 0.017 3.983 11 H 0.100 0.900 12 C 0.253 3.747 13 N -0.473 5.473 14 C 0.018 3.982 15 C -0.606 4.606 16 H 0.051 0.949 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.286 1.286 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.346 0.654 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.017 0.983 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 9.243 6.554 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.248 6.248 3 C 0.001 3.999 4 C -0.202 4.202 5 C -0.260 4.260 6 C -0.058 4.058 7 H 0.135 0.865 8 N -0.280 5.280 9 C -0.064 4.064 10 C -0.005 4.005 11 H 0.118 0.882 12 C -0.064 4.064 13 N -0.149 5.149 14 C -0.020 4.020 15 C -0.644 4.644 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.545 5.545 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.166 0.834 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.911 7.019 4.678 18.009 hybrid contribution -1.144 1.586 1.312 2.355 sum -17.055 8.605 5.991 20.020 Atomic orbital electron populations 1.22801 0.82143 1.02525 0.99693 1.88096 1.18656 1.23946 1.94095 1.22250 0.93391 0.85375 0.98899 1.21802 1.00379 0.97252 1.00722 1.24257 1.06239 1.02168 0.93345 1.22769 0.90474 0.93147 0.99371 0.86494 1.60129 1.16595 1.23589 1.27656 1.22167 0.87312 0.96337 1.00592 1.19022 0.95659 0.89105 0.96674 0.88213 1.28703 0.91153 0.93222 0.93320 1.80952 1.12033 1.10990 1.10954 1.19280 0.87538 0.98647 0.96562 1.21974 0.98297 0.96449 1.47645 0.93074 1.25788 0.95657 1.03546 0.93386 1.70807 1.39902 1.01661 1.42133 0.83577 0.76165 0.74348 0.76517 1.20699 1.21423 1.21278 0.94329 0.93769 0.89735 0.91209 0.91297 0.91204 0.88116 0.88450 0.83391 0.93140 0.90416 0.95395 0.96454 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.05 101.05 1.02 1.26 16 2 O -0.33 -4.57 10.71 -35.23 -0.38 -4.95 16 3 C 0.04 0.49 3.03 -90.62 -0.27 0.22 16 4 C -0.14 -1.26 9.49 37.15 0.35 -0.91 16 5 C -0.22 -2.21 9.82 -26.73 -0.26 -2.47 16 6 C 0.05 0.64 6.03 -67.72 -0.41 0.23 16 7 H 0.12 1.24 7.90 -51.93 -0.41 0.83 16 8 N -0.65 -9.26 6.25 -106.73 -0.67 -9.92 16 9 C 0.07 0.99 4.90 -3.82 -0.02 0.97 16 10 C 0.02 0.33 2.35 -93.40 -0.22 0.11 16 11 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 12 C 0.25 5.58 13.67 -20.78 -0.28 5.30 16 13 N -0.47 -11.33 18.53 42.13 0.78 -10.55 16 14 C 0.02 0.43 3.74 -27.88 -0.10 0.32 16 15 C -0.61 -16.51 8.60 -34.44 -0.30 -16.81 16 16 H 0.05 1.41 7.59 -52.48 -0.40 1.01 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -26.92 13.65 55.43 0.76 -26.16 16 19 Si 1.07 25.22 29.90 -169.99 -5.08 20.13 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.04 0.38 6.47 -51.93 -0.34 0.05 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.53 5.78 -51.93 -0.30 0.23 16 28 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.35 4.61 8.52 -39.29 -0.33 4.27 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.64 8.01 -51.93 -0.42 0.23 16 35 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 36 H 0.27 7.79 7.22 -40.82 -0.29 7.49 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -32.56 309.89 -6.00 -38.56 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.49 Total: -0.50 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.60 Total: -11.28 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.87 Total: -46.63 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.95 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.56 -6.00 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.697 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds