Wall clock time and date at job start Sun Mar 29 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 113.99781 * 2 1 4 4 C 1.52995 * 115.56608 * 325.68974 * 3 2 1 5 5 C 1.53004 * 117.49725 * 111.38171 * 3 2 1 6 6 C 1.52996 * 60.00011 * 107.48487 * 5 3 2 7 7 H 1.09005 * 117.51530 * 107.48601 * 6 5 3 8 8 N 1.46897 * 117.49833 * 252.50573 * 6 5 3 9 9 C 1.46902 * 111.00151 * 223.62458 * 8 6 5 10 10 C 1.52999 * 109.47028 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47018 * 305.00032 * 10 9 8 12 12 C 1.47205 * 109.47362 * 65.00037 * 10 9 8 13 13 N 5.09748 * 137.50091 * 218.27644 * 2 1 3 14 14 C 1.53006 * 109.47054 * 184.99888 * 10 9 8 15 15 C 1.50698 * 109.47184 * 174.99717 * 14 10 9 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 10 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.08997 * 109.46960 * 299.99940 * 1 2 3 24 24 H 1.08997 * 109.46647 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47334 * 274.31297 * 4 3 2 27 27 H 1.08997 * 109.47025 * 34.31027 * 4 3 2 28 28 H 1.08995 * 109.47309 * 154.31339 * 4 3 2 29 29 H 1.09003 * 117.49868 * 359.97438 * 5 3 2 30 30 H 1.08998 * 117.49569 * 214.97984 * 5 3 2 31 31 H 1.00902 * 111.00171 * 347.58134 * 8 6 5 32 32 H 1.08997 * 109.46829 * 60.00184 * 9 8 6 33 33 H 1.09003 * 109.47353 * 300.00251 * 9 8 6 34 34 H 1.08998 * 109.46509 * 55.00315 * 14 10 9 35 35 H 1.08993 * 109.46955 * 294.99875 * 14 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2373 2.3722 -0.7780 5 6 2.7496 1.7495 1.2638 6 6 3.5374 1.3987 0.0000 7 1 3.9915 2.2200 -0.5545 8 7 4.2939 0.1396 0.0001 9 6 5.6305 0.3284 -0.5795 10 6 6.3862 -1.0018 -0.5628 11 1 6.4048 -1.3964 0.4531 12 6 5.7093 -1.9620 -1.4498 13 7 5.1874 -2.7035 -2.1333 14 6 7.8195 -0.7803 -1.0503 15 6 8.5991 -2.0632 -0.9180 16 1 8.1200 -2.9482 -0.5260 17 6 9.9235 -2.1074 -1.2985 18 7 10.5068 -1.0299 -1.7764 19 14 10.8896 -3.6979 -1.1353 20 1 12.2808 -3.4828 -1.6083 21 1 10.2452 -4.7549 -1.9556 22 1 10.9109 -4.1203 0.2882 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.5279 2.3382 -1.8280 27 1 0.1676 2.1819 -0.6907 28 1 1.4657 3.3566 -0.3695 29 1 2.7923 1.0461 2.0953 30 1 2.6852 2.8017 1.5409 31 1 4.3545 -0.2459 0.9306 32 1 6.1795 1.0659 0.0059 33 1 5.5347 0.6786 -1.6073 34 1 8.2921 -0.0043 -0.4481 35 1 7.8041 -0.4705 -2.0951 36 1 10.0050 -0.2041 -1.8615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336847477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:32 Heat of formation + Delta-G solvation = -23.078359 kcal Electronic energy + Delta-G solvation = -16492.228851 eV Core-core repulsion = 13783.318319 eV Total energy + Delta-G solvation = -2708.910532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22801 -38.67355 -36.86678 -35.88750 -34.71031 -32.31872 -29.48671 -27.70474 -27.23807 -24.51513 -23.70487 -22.57505 -21.08271 -19.13817 -18.43479 -17.50718 -16.72159 -16.05196 -15.82264 -15.68343 -15.48226 -15.44638 -14.93785 -14.36272 -14.09676 -14.01264 -13.72506 -13.53571 -13.25888 -13.00150 -12.88183 -12.79749 -12.45009 -12.21211 -12.09078 -11.95742 -11.85281 -11.71193 -11.36870 -10.68426 -10.52143 -10.04468 -9.10189 -8.63349 -6.34195 1.54421 1.60826 1.79983 1.98518 2.06176 2.56778 2.68092 2.82458 3.05165 3.18239 3.26589 3.79191 4.00537 4.05330 4.13007 4.24624 4.42835 4.49873 4.54147 4.63542 4.67666 4.74251 4.83286 4.86058 4.87663 4.89451 5.00114 5.18076 5.20410 5.38904 5.92302 6.05145 6.21397 6.38539 6.47165 6.63275 6.82997 7.43244 8.78964 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044138 B = 0.004500 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.223016 B = 6220.780360 C = 6545.864251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.369 6.369 3 C 0.028 3.972 4 C -0.141 4.141 5 C -0.200 4.200 6 C 0.035 3.965 7 H 0.129 0.871 8 N -0.665 5.665 9 C 0.081 3.919 10 C 0.026 3.974 11 H 0.117 0.883 12 C 0.262 3.738 13 N -0.511 5.511 14 C 0.022 3.978 15 C -0.617 4.617 16 H 0.044 0.956 17 C -0.029 4.029 18 N -0.935 5.935 19 Si 1.105 2.895 20 H -0.282 1.282 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.349 0.651 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.035 0.965 35 H -0.003 1.003 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 10.089 7.775 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.287 6.287 3 C -0.013 4.013 4 C -0.198 4.198 5 C -0.239 4.239 6 C -0.076 4.076 7 H 0.147 0.853 8 N -0.296 5.296 9 C -0.049 4.049 10 C 0.004 3.996 11 H 0.135 0.865 12 C -0.054 4.054 13 N -0.189 5.189 14 C -0.016 4.016 15 C -0.655 4.655 16 H 0.063 0.937 17 C -0.228 4.228 18 N -0.572 5.572 19 Si 0.928 3.072 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.170 0.830 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.016 0.984 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.746 7.880 5.915 19.430 hybrid contribution -0.956 1.333 0.938 1.889 sum -17.702 9.213 6.853 21.100 Atomic orbital electron populations 1.22940 0.80584 1.03096 1.00884 1.88022 1.20601 1.25688 1.94409 1.22546 0.93166 0.85323 1.00269 1.21816 1.00600 0.97392 0.99991 1.24246 1.03993 1.03376 0.92263 1.22923 0.90742 0.92555 1.01395 0.85321 1.60052 1.15938 1.25530 1.28082 1.21948 0.87971 0.94095 1.00927 1.19049 0.93447 0.90658 0.96415 0.86527 1.29330 0.90446 0.92774 0.92839 1.80944 1.13384 1.12382 1.12175 1.19146 0.89793 0.97095 0.95607 1.22380 0.98697 0.97707 1.46674 0.93716 1.27048 0.97279 1.05519 0.92928 1.70910 1.40211 1.02056 1.44071 0.83062 0.74973 0.71363 0.77793 1.20712 1.21047 1.18890 0.92840 0.92783 0.89611 0.91957 0.90362 0.89176 0.88601 0.85972 0.83042 0.90820 0.91079 0.94709 0.98444 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.05 113.37 1.14 1.53 16 2 O -0.37 -9.82 10.71 -148.98 -1.60 -11.42 16 3 C 0.03 0.60 3.03 -10.79 -0.03 0.57 16 4 C -0.14 -2.14 9.49 71.98 0.68 -1.45 16 5 C -0.20 -3.47 9.82 30.59 0.30 -3.16 16 6 C 0.03 0.76 6.03 44.91 0.27 1.03 16 7 H 0.13 2.43 7.90 -2.38 -0.02 2.41 16 8 N -0.67 -17.99 6.25 -491.57 -3.07 -21.06 16 9 C 0.08 2.31 4.90 86.30 0.42 2.74 16 10 C 0.03 0.97 2.35 -12.60 -0.03 0.94 16 11 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 12 C 0.26 11.50 13.67 89.45 1.22 12.72 16 13 N -0.51 -24.62 18.53 20.00 0.37 -24.25 16 14 C 0.02 1.03 3.74 29.85 0.11 1.14 16 15 C -0.62 -33.43 8.60 25.60 0.22 -33.21 16 16 H 0.04 2.43 7.59 -2.91 -0.02 2.41 16 17 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 18 N -0.94 -55.53 13.65 21.45 0.29 -55.24 16 19 Si 1.11 50.23 29.90 68.60 2.05 52.28 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.86 6.47 -2.39 -0.02 0.85 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.08 1.02 5.78 -2.39 -0.01 1.01 16 28 H 0.09 0.98 7.90 -2.39 -0.02 0.96 16 29 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 30 H 0.12 1.51 8.05 -2.39 -0.02 1.49 16 31 H 0.35 8.77 8.52 -89.69 -0.76 8.01 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.57 8.01 -2.39 -0.02 1.55 16 35 H 0.00 -0.14 8.01 -2.39 -0.02 -0.16 16 36 H 0.26 15.32 7.22 -92.71 -0.67 14.66 16 Total: -1.00 -69.44 309.89 3.22 -66.22 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.40 Total: 11.80 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.77 Total: -18.32 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -2.41 Total: -100.55 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.60 Total: -11.42 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.28 kcal Total: -69.44 3.22 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.139 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds