Wall clock time and date at job start Sun Mar 29 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48496 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 11 11 C 1.53194 * 108.89214 * 126.34278 * 10 9 7 12 12 C 1.53350 * 109.14857 * 54.57312 * 11 10 9 13 13 N 1.46501 * 109.40435 * 178.67860 * 12 11 10 14 14 C 1.46764 * 124.35331 * 239.84947 * 13 12 11 15 15 C 1.54658 * 105.38447 * 162.85784 * 14 13 12 16 16 C 1.54632 * 101.68277 * 25.76703 * 15 14 13 17 17 C 1.34422 * 124.34512 * 60.15309 * 13 12 11 18 18 O 1.21277 * 124.94569 * 0.42027 * 17 13 12 19 19 C 1.53038 * 109.61172 * 298.71505 * 12 11 10 20 20 C 1.46917 * 120.63313 * 331.84348 * 9 7 2 21 21 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.58470 * 246.20071 * 10 9 7 23 23 H 1.09001 * 109.58650 * 6.48248 * 10 9 7 24 24 H 1.08992 * 109.49638 * 174.66086 * 11 10 9 25 25 H 1.09002 * 109.49602 * 294.75299 * 11 10 9 26 26 H 1.09003 * 109.43109 * 58.76181 * 12 11 10 27 27 H 1.09002 * 110.24296 * 281.98899 * 14 13 12 28 28 H 1.08995 * 110.24492 * 43.98749 * 14 13 12 29 29 H 1.09000 * 111.19218 * 267.59632 * 15 14 13 30 30 H 1.08996 * 110.82309 * 143.77447 * 15 14 13 31 31 H 1.09005 * 110.48659 * 216.30803 * 16 15 14 32 32 H 1.08992 * 110.59994 * 93.72527 * 16 15 14 33 33 H 1.09007 * 109.49142 * 301.42123 * 19 12 11 34 34 H 1.08995 * 109.49863 * 181.32652 * 19 12 11 35 35 H 1.09003 * 109.58812 * 353.37838 * 20 9 7 36 36 H 1.09004 * 109.58911 * 113.65975 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7463 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 1.8136 -3.6528 -0.2011 11 6 2.0696 -4.6199 0.9591 12 6 0.8116 -4.7022 1.8323 13 7 1.0395 -5.6499 2.9260 14 6 0.2410 -6.8603 3.1529 15 6 1.0906 -7.7410 4.0986 16 6 1.9541 -6.6814 4.8217 17 6 2.0031 -5.5195 3.8541 18 8 2.7963 -4.6037 3.9080 19 6 0.4972 -3.3210 2.4115 20 6 0.2260 -2.3410 1.2659 21 1 -0.4849 0.8401 -0.0004 22 1 1.0400 -4.0598 -0.8521 23 1 2.7330 -3.5126 -0.7696 24 1 2.3075 -5.6074 0.5638 25 1 2.9046 -4.2565 1.5581 26 1 -0.0286 -5.0419 1.2267 27 1 -0.7080 -6.6033 3.6235 28 1 0.0672 -7.3796 2.2105 29 1 1.7149 -8.4350 3.5359 30 1 0.4556 -8.2750 4.8054 31 1 2.9568 -7.0673 5.0056 32 1 1.4853 -6.3786 5.7579 33 1 1.3470 -2.9701 2.9971 34 1 -0.3834 -3.3864 3.0506 35 1 0.0991 -1.3355 1.6674 36 1 -0.6777 -2.6386 0.7339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338620017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:35 Heat of formation + Delta-G solvation = -14.682777 kcal Electronic energy + Delta-G solvation = -17746.365139 eV Core-core repulsion = 15037.818666 eV Total energy + Delta-G solvation = -2708.546473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28593 -37.13157 -36.05740 -33.52062 -31.40651 -29.89295 -29.02369 -27.45805 -24.99685 -22.35505 -22.10327 -21.88015 -19.64823 -18.47118 -16.82435 -16.50473 -16.10435 -14.97599 -14.64165 -13.77485 -13.67655 -13.56719 -13.43664 -13.32283 -12.98004 -12.73290 -12.39000 -12.14812 -11.54547 -11.39026 -11.10878 -11.01528 -10.90327 -10.65142 -10.31448 -10.16825 -10.01754 -9.66666 -9.54318 -9.22766 -8.46762 -8.23065 -6.61947 -5.73336 -3.14854 2.89072 3.27969 3.44513 3.49105 3.52527 4.41946 4.43829 4.56105 4.73074 5.03809 5.35282 5.40674 5.44475 5.47608 5.57109 5.58884 5.69017 5.74029 5.84253 5.88872 6.16256 6.34770 6.40939 6.54437 6.60406 6.74379 6.82964 7.03885 7.12266 7.38807 7.53491 7.71025 7.85961 8.50340 8.52380 9.27269 9.90557 10.47022 11.35741 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044858 B = 0.006293 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.046840 B = 4448.664236 C = 4580.505050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.150 3.850 11 C -0.144 4.144 12 C 0.166 3.834 13 N -0.617 5.617 14 C 0.100 3.900 15 C -0.131 4.131 16 C -0.158 4.158 17 C 0.511 3.489 18 O -0.523 6.523 19 C -0.152 4.152 20 C 0.176 3.824 21 H 0.254 0.746 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -15.834 7.117 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.023 3.977 11 C -0.184 4.184 12 C 0.065 3.935 13 N -0.351 5.351 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.198 4.198 17 C 0.298 3.702 18 O -0.399 6.399 19 C -0.192 4.192 20 C 0.049 3.951 21 H 0.064 0.936 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.791 -15.133 7.053 16.714 hybrid contribution 0.254 0.721 0.038 0.766 sum -0.537 -14.411 7.091 16.070 Atomic orbital electron populations 1.70018 1.05258 1.25552 1.54199 1.25024 0.95298 0.98386 1.00938 0.86358 0.78926 0.83269 0.78183 1.20875 1.21644 1.20993 1.19153 0.92552 0.84844 1.41359 0.91775 1.44030 1.35822 1.01591 1.49874 1.20849 0.97729 0.86713 0.92415 1.22476 0.98090 0.99095 0.98776 1.21109 0.98010 0.88517 0.85843 1.48714 1.32503 1.24748 1.29132 1.22083 0.94659 0.85695 0.99890 1.22604 0.98572 0.97129 0.98560 1.22358 1.02669 0.95508 0.99264 1.20785 0.80470 0.86944 0.82044 1.90744 1.39663 1.35787 1.73703 1.22611 1.00918 0.94991 1.00678 1.20742 0.88561 0.98149 0.87646 0.93644 0.96510 0.92537 0.93324 0.90726 0.90413 0.91387 0.90651 0.90190 0.89576 0.88560 0.88280 0.90979 0.93517 0.89230 0.96413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.92 11.20 55.49 0.62 -26.30 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 8 H 0.06 1.82 7.89 -52.48 -0.41 1.41 16 9 N -0.59 -15.54 2.99 -172.32 -0.52 -16.05 16 10 C 0.15 3.30 6.50 -3.71 -0.02 3.28 16 11 C -0.14 -2.79 5.37 -26.45 -0.14 -2.94 16 12 C 0.17 3.00 2.71 -67.73 -0.18 2.81 16 13 N -0.62 -9.33 2.83 -164.50 -0.47 -9.79 16 14 C 0.10 1.02 7.31 -3.03 -0.02 0.99 16 15 C -0.13 -1.03 7.19 -25.00 -0.18 -1.21 16 16 C -0.16 -1.67 6.86 -26.74 -0.18 -1.85 16 17 C 0.51 8.33 7.42 -10.86 -0.08 8.25 16 18 O -0.52 -11.10 15.17 5.56 0.08 -11.02 16 19 C -0.15 -3.20 5.35 -26.61 -0.14 -3.34 16 20 C 0.18 4.37 5.30 -3.72 -0.02 4.35 16 21 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.66 6.86 -51.93 -0.36 1.30 16 26 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.73 6.82 -51.93 -0.35 1.37 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 2.50 6.06 -51.93 -0.31 2.19 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -33.13 284.94 -7.85 -40.98 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.63 Total: -2.60 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.21 Total: 3.00 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.36 Total: -52.14 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.13 -7.85 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338620017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.299 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds