Wall clock time and date at job start Sun Mar 29 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99645 * 2 1 4 4 C 1.32990 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.47106 * 119.99683 * 5.64000 * 4 2 1 6 6 O 1.21610 * 120.00610 * 354.73359 * 5 4 2 7 7 N 1.34784 * 119.99601 * 174.73677 * 5 4 2 8 8 C 1.46504 * 119.99875 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.63749 * 36.68394 * 8 7 5 10 10 C 1.55149 * 110.71675 * 160.02098 * 8 7 5 11 11 C 1.54915 * 101.58004 * 153.86654 * 10 8 7 12 12 N 1.47422 * 104.82898 * 322.98872 * 11 10 8 13 13 C 1.36940 * 125.64928 * 204.09283 * 12 11 10 14 14 H 1.08003 * 119.99974 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00162 * 0.03940 * 13 12 11 16 16 N 1.31620 * 119.99582 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00482 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47172 * 90.00135 * 17 15 13 19 19 H 1.48501 * 109.47418 * 210.00696 * 17 15 13 20 20 H 1.48506 * 109.47046 * 330.00220 * 17 15 13 21 21 C 1.47019 * 108.70513 * 24.12881 * 12 11 10 22 22 H 1.08996 * 109.47399 * 238.21160 * 1 2 3 23 23 H 1.09003 * 109.47299 * 358.21568 * 1 2 3 24 24 H 1.09008 * 109.47132 * 118.21682 * 1 2 3 25 25 H 1.08999 * 109.46769 * 239.99709 * 3 2 1 26 26 H 1.08999 * 109.47317 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46379 * 120.00256 * 3 2 1 28 28 H 1.08001 * 120.00063 * 185.63600 * 4 2 1 29 29 H 0.97000 * 119.99646 * 359.71875 * 7 5 4 30 30 H 1.08998 * 111.00867 * 271.93444 * 10 8 7 31 31 H 1.08999 * 111.01071 * 35.79199 * 10 8 7 32 32 H 1.08998 * 110.36863 * 204.15656 * 11 10 8 33 33 H 1.08997 * 110.46016 * 81.87379 * 11 10 8 34 34 H 0.97004 * 120.00428 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.88406 * 239.52009 * 21 12 11 36 36 H 1.08999 * 109.88420 * 118.35529 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4417 -2.4226 -0.1241 6 8 0.2257 -2.4272 -0.1312 7 7 2.1205 -3.5822 -0.2304 8 6 1.3934 -4.8480 -0.3540 9 1 0.4956 -4.7179 -0.9584 10 6 2.3074 -5.9500 -0.9516 11 6 1.6591 -7.2356 -0.3801 12 7 1.2286 -6.8680 0.9812 13 6 1.0377 -7.7390 2.0204 14 1 0.7195 -7.3688 2.9838 15 6 1.2533 -9.0978 1.8357 16 7 1.6419 -9.5488 0.6619 17 14 0.9921 -10.2862 3.2531 18 1 -0.4146 -10.7616 3.2476 19 1 1.9072 -11.4459 3.1018 20 1 1.2763 -9.5957 4.5368 21 6 1.0376 -5.4114 1.0380 22 1 -0.3634 -0.5413 0.8735 23 1 -0.3634 1.0272 0.0320 24 1 -0.3634 -0.4859 -0.9056 25 1 2.8871 1.3629 -0.8900 26 1 1.5521 2.1336 0.0005 27 1 2.8871 1.3628 0.8900 28 1 3.2481 -1.1539 0.0924 29 1 3.0905 -3.5782 -0.2288 30 1 2.2668 -5.9431 -2.0409 31 1 3.3332 -5.8402 -0.5999 32 1 2.3893 -8.0439 -0.3416 33 1 0.8001 -7.5296 -0.9831 34 1 1.7930 -10.4983 0.5328 35 1 1.6962 -4.9802 1.7919 36 1 -0.0013 -5.1827 1.2759 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481685123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:06 Heat of formation + Delta-G solvation = 0.413041 kcal Electronic energy + Delta-G solvation = -16863.936197 eV Core-core repulsion = 14156.044328 eV Total energy + Delta-G solvation = -2707.891869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67176 -37.37894 -35.39175 -33.89319 -31.86165 -29.28750 -28.30061 -27.77518 -26.60260 -24.40987 -21.45300 -20.46315 -19.70819 -18.56246 -16.99524 -16.69456 -15.68108 -14.88443 -14.64916 -14.38799 -14.10600 -13.89487 -13.55050 -13.07420 -12.54885 -12.42638 -12.29640 -11.86581 -11.78088 -11.62410 -11.58516 -11.05077 -10.86772 -10.77845 -10.42402 -10.09836 -9.79897 -9.57168 -9.33906 -9.18516 -8.64078 -8.55315 -6.81389 -5.63857 -3.05174 1.40512 3.42035 3.46463 3.48399 3.49947 3.55141 4.51715 4.70448 4.76338 5.13968 5.29959 5.31963 5.44078 5.48124 5.54239 5.61709 5.66043 5.83944 5.86343 5.87021 6.08464 6.25018 6.42458 6.46120 6.49449 6.51802 6.64283 6.80651 7.09869 7.49773 7.64348 7.81236 7.90455 8.36342 8.55728 9.23873 9.84525 10.49051 11.40408 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050990 B = 0.004672 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.993272 B = 5991.490904 C = 6226.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.125 4.125 4 C -0.232 4.232 5 C 0.540 3.460 6 O -0.544 6.544 7 N -0.715 5.715 8 C 0.132 3.868 9 H 0.089 0.911 10 C -0.149 4.149 11 C 0.153 3.847 12 N -0.604 5.604 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.924 5.924 17 Si 0.916 3.084 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.129 3.871 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.025 0.975 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 17.465 -3.597 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.043 4.043 3 C -0.182 4.182 4 C -0.253 4.253 5 C 0.330 3.670 6 O -0.424 6.424 7 N -0.364 5.364 8 C 0.028 3.972 9 H 0.107 0.893 10 C -0.188 4.188 11 C 0.028 3.972 12 N -0.331 5.331 13 C -0.349 4.349 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.573 5.573 17 Si 0.746 3.254 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.002 3.998 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.231 0.769 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.975 17.212 -3.546 17.824 hybrid contribution 0.411 -0.664 0.739 1.075 sum 3.385 16.548 -2.808 17.123 Atomic orbital electron populations 1.21064 0.90778 1.00746 1.04564 1.22541 0.96952 0.94355 0.90408 1.21010 1.00242 0.94251 1.02701 1.22398 1.00106 0.92301 1.10519 1.18552 0.87493 0.84273 0.76721 1.90769 1.13697 1.87401 1.50514 1.45986 1.09957 1.06269 1.74220 1.22057 0.95672 0.81646 0.97865 0.89272 1.23312 0.98735 0.97499 0.99303 1.21934 0.98078 0.93278 0.83914 1.44464 1.79567 1.00219 1.08828 1.19104 1.38277 0.87452 0.90029 0.90488 1.24781 1.02018 0.96709 0.97223 1.69773 1.53179 1.13054 1.21314 0.86050 0.77520 0.80645 0.81167 1.21611 1.21649 1.20712 1.21601 0.97974 0.86240 0.93955 0.89916 0.93232 0.89877 0.90721 0.91322 0.90769 0.85884 0.76869 0.91797 0.91688 0.87232 0.96686 0.93730 0.95749 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.34 36.01 0.30 -1.06 16 2 C -0.04 -0.44 6.11 -101.17 -0.62 -1.06 16 3 C -0.13 -0.91 10.07 36.01 0.36 -0.55 16 4 C -0.23 -2.77 9.67 -37.80 -0.37 -3.13 16 5 C 0.54 8.51 7.73 -12.66 -0.10 8.41 16 6 O -0.54 -10.30 12.83 5.27 0.07 -10.23 16 7 N -0.71 -11.01 5.13 -53.21 -0.27 -11.28 16 8 C 0.13 2.50 3.24 -66.10 -0.21 2.29 16 9 H 0.09 1.79 7.69 -51.93 -0.40 1.39 16 10 C -0.15 -2.80 6.69 -24.58 -0.16 -2.96 16 11 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 12 N -0.60 -16.05 3.39 -170.07 -0.58 -16.63 16 13 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 14 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 16 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 17 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.13 2.94 6.99 -3.07 -0.02 2.92 16 22 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 23 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 24 H 0.08 1.12 7.15 -51.92 -0.37 0.74 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.40 5.00 8.50 -40.82 -0.35 4.65 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 32 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 35 H 0.02 0.56 8.03 -51.93 -0.42 0.14 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -32.14 295.66 -7.39 -39.53 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.52 Total: 1.68 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.08 Total: 1.68 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.29 Total: -54.48 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.14 -7.39 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481685123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.939 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds