Wall clock time and date at job start Sun Mar 29 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99645 * 2 1 4 4 C 1.32990 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.47106 * 119.99683 * 5.64000 * 4 2 1 6 6 O 1.21610 * 120.00610 * 354.73359 * 5 4 2 7 7 N 1.34784 * 119.99601 * 174.73677 * 5 4 2 8 8 C 1.46504 * 119.99875 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.63749 * 36.68394 * 8 7 5 10 10 C 1.55149 * 110.71675 * 160.02098 * 8 7 5 11 11 C 1.54915 * 101.58004 * 153.86654 * 10 8 7 12 12 N 1.47422 * 104.82898 * 322.98872 * 11 10 8 13 13 C 1.36940 * 125.64928 * 204.09283 * 12 11 10 14 14 H 1.08003 * 119.99974 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00162 * 0.03940 * 13 12 11 16 16 N 1.31620 * 119.99582 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00482 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47172 * 90.00135 * 17 15 13 19 19 H 1.48501 * 109.47418 * 210.00696 * 17 15 13 20 20 H 1.48506 * 109.47046 * 330.00220 * 17 15 13 21 21 C 1.47019 * 108.70513 * 24.12881 * 12 11 10 22 22 H 1.08996 * 109.47399 * 238.21160 * 1 2 3 23 23 H 1.09003 * 109.47299 * 358.21568 * 1 2 3 24 24 H 1.09008 * 109.47132 * 118.21682 * 1 2 3 25 25 H 1.08999 * 109.46769 * 239.99709 * 3 2 1 26 26 H 1.08999 * 109.47317 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46379 * 120.00256 * 3 2 1 28 28 H 1.08001 * 120.00063 * 185.63600 * 4 2 1 29 29 H 0.97000 * 119.99646 * 359.71875 * 7 5 4 30 30 H 1.08998 * 111.00867 * 271.93444 * 10 8 7 31 31 H 1.08999 * 111.01071 * 35.79199 * 10 8 7 32 32 H 1.08998 * 110.36863 * 204.15656 * 11 10 8 33 33 H 1.08997 * 110.46016 * 81.87379 * 11 10 8 34 34 H 0.97004 * 120.00428 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.88406 * 239.52009 * 21 12 11 36 36 H 1.08999 * 109.88420 * 118.35529 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4417 -2.4226 -0.1241 6 8 0.2257 -2.4272 -0.1312 7 7 2.1205 -3.5822 -0.2304 8 6 1.3934 -4.8480 -0.3540 9 1 0.4956 -4.7179 -0.9584 10 6 2.3074 -5.9500 -0.9516 11 6 1.6591 -7.2356 -0.3801 12 7 1.2286 -6.8680 0.9812 13 6 1.0377 -7.7390 2.0204 14 1 0.7195 -7.3688 2.9838 15 6 1.2533 -9.0978 1.8357 16 7 1.6419 -9.5488 0.6619 17 14 0.9921 -10.2862 3.2531 18 1 -0.4146 -10.7616 3.2476 19 1 1.9072 -11.4459 3.1018 20 1 1.2763 -9.5957 4.5368 21 6 1.0376 -5.4114 1.0380 22 1 -0.3634 -0.5413 0.8735 23 1 -0.3634 1.0272 0.0320 24 1 -0.3634 -0.4859 -0.9056 25 1 2.8871 1.3629 -0.8900 26 1 1.5521 2.1336 0.0005 27 1 2.8871 1.3628 0.8900 28 1 3.2481 -1.1539 0.0924 29 1 3.0905 -3.5782 -0.2288 30 1 2.2668 -5.9431 -2.0409 31 1 3.3332 -5.8402 -0.5999 32 1 2.3893 -8.0439 -0.3416 33 1 0.8001 -7.5296 -0.9831 34 1 1.7930 -10.4983 0.5328 35 1 1.6962 -4.9802 1.7919 36 1 -0.0013 -5.1827 1.2759 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481685123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:05 Heat of formation + Delta-G solvation = -21.133587 kcal Electronic energy + Delta-G solvation = -16864.870529 eV Core-core repulsion = 14156.044328 eV Total energy + Delta-G solvation = -2708.826201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97467 -39.03879 -36.42208 -35.48431 -33.74982 -31.12752 -29.56783 -28.59575 -28.13091 -26.35514 -22.81738 -22.20653 -21.36116 -19.68970 -18.88587 -17.98719 -17.19818 -16.62893 -16.22290 -15.74937 -15.39631 -15.16792 -14.63706 -14.43411 -14.23190 -13.74241 -13.49860 -13.31056 -13.23899 -13.00861 -12.74293 -12.64351 -12.48937 -12.34290 -12.16224 -12.02517 -11.85967 -11.44257 -10.78418 -10.59478 -10.26202 -9.79355 -8.94246 -7.80747 -5.26320 0.45299 1.45772 1.48151 1.56945 2.26820 2.33996 2.50251 3.29292 3.65752 3.75187 3.91872 3.97080 4.04398 4.21540 4.34562 4.57137 4.61346 4.73590 4.74016 4.84651 4.88826 4.93737 4.99511 5.04188 5.10138 5.22047 5.41832 5.53650 5.56973 5.61916 5.68452 5.75868 6.27297 6.69470 7.07534 7.35522 7.72792 8.36349 9.21065 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050990 B = 0.004672 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.993272 B = 5991.490904 C = 6226.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.246 4.246 5 C 0.532 3.468 6 O -0.585 6.585 7 N -0.704 5.704 8 C 0.150 3.850 9 H 0.076 0.924 10 C -0.126 4.126 11 C 0.152 3.848 12 N -0.624 5.624 13 C -0.247 4.247 14 H 0.075 0.925 15 C -0.062 4.062 16 N -0.946 5.946 17 Si 0.983 3.017 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.271 1.271 21 C 0.130 3.870 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.415 0.585 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.083 0.917 33 H -0.011 1.011 34 H 0.250 0.750 35 H 0.026 0.974 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 19.355 -3.512 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.267 4.267 5 C 0.324 3.676 6 O -0.467 6.467 7 N -0.356 5.356 8 C 0.044 3.956 9 H 0.094 0.906 10 C -0.165 4.165 11 C 0.027 3.973 12 N -0.351 5.351 13 C -0.376 4.376 14 H 0.093 0.907 15 C -0.254 4.254 16 N -0.595 5.595 17 Si 0.811 3.189 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.195 1.195 21 C 0.003 3.997 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.174 0.826 29 H 0.252 0.748 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.007 0.993 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 4.578 19.138 -3.467 19.981 hybrid contribution -0.158 -1.195 0.718 1.403 sum 4.420 17.943 -2.749 18.683 Atomic orbital electron populations 1.21029 0.92163 1.01786 1.02407 1.22905 0.96343 0.95905 0.87921 1.21081 1.00494 0.92114 1.04099 1.22430 1.01454 0.90311 1.12464 1.19302 0.87266 0.85428 0.75583 1.90762 1.15668 1.88004 1.52276 1.45783 1.10697 1.04905 1.74171 1.21597 0.95755 0.83247 0.95009 0.90599 1.23112 0.98860 0.93731 1.00807 1.21780 0.96668 0.95577 0.83251 1.44755 1.79688 1.01558 1.09100 1.19435 1.38883 0.88499 0.90793 0.90716 1.25635 1.01791 0.98163 0.99850 1.70009 1.53485 1.13096 1.22953 0.85012 0.77174 0.78210 0.78497 1.21460 1.21304 1.19549 1.21675 0.96695 0.84755 0.96585 0.92410 0.90470 0.91935 0.89053 0.90106 0.89280 0.82618 0.74817 0.88818 0.89796 0.89874 0.99337 0.94025 0.95553 0.97838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.34 71.24 0.59 -2.09 16 2 C -0.03 -0.55 6.11 -17.61 -0.11 -0.66 16 3 C -0.12 -1.26 10.07 71.24 0.72 -0.55 16 4 C -0.25 -5.25 9.67 23.43 0.23 -5.02 16 5 C 0.53 16.30 7.73 86.57 0.67 16.97 16 6 O -0.58 -22.52 12.83 -4.06 -0.05 -22.57 16 7 N -0.70 -20.65 5.13 -440.50 -2.26 -22.91 16 8 C 0.15 5.62 3.24 46.18 0.15 5.77 16 9 H 0.08 3.08 7.69 -2.38 -0.02 3.06 16 10 C -0.13 -4.57 6.69 31.99 0.21 -4.36 16 11 C 0.15 7.63 5.89 86.86 0.51 8.14 16 12 N -0.62 -33.99 3.39 -691.99 -2.35 -36.34 16 13 C -0.25 -14.52 10.27 84.03 0.86 -13.66 16 14 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 15 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 16 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 17 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C 0.13 6.02 6.99 86.73 0.61 6.63 16 22 H 0.06 1.61 7.31 -2.39 -0.02 1.60 16 23 H 0.08 1.28 7.70 -2.39 -0.02 1.26 16 24 H 0.06 1.69 7.15 -2.38 -0.02 1.68 16 25 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 0.67 7.70 -2.39 -0.02 0.66 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.41 9.28 8.50 -92.71 -0.79 8.50 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.08 2.75 8.00 -2.39 -0.02 2.73 16 32 H 0.08 4.63 5.87 -2.39 -0.01 4.61 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.09 295.66 2.77 -69.32 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.28 Total: 12.39 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 4.91 Total: 8.09 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.39 Total: -115.66 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -72.09 2.77 -69.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481685123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.186 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds