Wall clock time and date at job start Sun Mar 29 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32991 * 120.00111 * 2 1 4 4 C 1.50698 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99914 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00175 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99906 * 179.97438 * 5 3 2 8 8 C 1.46495 * 120.00234 * 179.97438 * 7 5 3 9 9 H 1.09000 * 110.91616 * 31.09979 * 8 7 5 10 10 C 1.55157 * 111.00828 * 155.00372 * 8 7 5 11 11 C 1.54325 * 102.94374 * 153.57764 * 10 8 7 12 12 N 1.47015 * 107.27065 * 337.80787 * 11 10 8 13 13 C 1.36938 * 125.64654 * 178.96333 * 12 11 10 14 14 H 1.08003 * 119.99775 * 179.97438 * 13 12 11 15 15 C 1.38807 * 120.00396 * 359.97339 * 13 12 11 16 16 N 1.31622 * 119.99373 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00409 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47353 * 89.99888 * 17 15 13 19 19 H 1.48502 * 109.47169 * 209.99909 * 17 15 13 20 20 H 1.48498 * 109.46810 * 329.99915 * 17 15 13 21 21 C 1.47425 * 108.70882 * 358.94051 * 12 11 10 22 22 H 1.09007 * 109.46940 * 60.00353 * 1 2 3 23 23 H 1.09003 * 109.47741 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47533 * 300.00286 * 1 2 3 25 25 H 1.07999 * 119.99728 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47171 * 270.00059 * 4 3 2 27 27 H 1.09003 * 109.47238 * 29.99997 * 4 3 2 28 28 H 1.09004 * 109.47224 * 149.99671 * 4 3 2 29 29 H 0.97000 * 120.00256 * 0.02562 * 7 5 3 30 30 H 1.08996 * 110.71539 * 271.94075 * 10 8 7 31 31 H 1.08999 * 110.72004 * 35.03529 * 10 8 7 32 32 H 1.09000 * 109.88274 * 97.22627 * 11 10 8 33 33 H 1.08998 * 109.88226 * 218.38672 * 11 10 8 34 34 H 0.97006 * 119.99857 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36633 * 265.29871 * 21 12 11 36 36 H 1.08996 * 110.37033 * 142.96251 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6789 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2204 2.4257 -0.0015 7 7 2.1104 3.5928 0.0000 8 6 1.3780 4.8616 -0.0012 9 1 0.4278 4.7628 0.5237 10 6 2.2361 5.9998 0.6116 11 6 1.6655 7.2647 -0.0636 12 7 1.0068 6.8367 -1.3063 13 6 0.3561 7.6577 -2.1882 14 1 -0.0972 7.2443 -3.0771 15 6 0.2789 9.0212 -1.9399 16 7 0.8317 9.5250 -0.8568 17 14 -0.6093 10.1410 -3.1426 18 1 -2.0405 10.2423 -2.7601 19 1 0.0084 11.4911 -3.1106 20 1 -0.5018 9.5797 -4.5132 21 6 1.1631 5.3775 -1.4460 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 2.0469 -0.9353 0.0004 26 1 4.0419 1.1519 1.0284 27 1 4.0425 0.2616 -0.5129 28 1 4.0425 2.0415 -0.5134 29 1 3.0804 3.5929 0.0003 30 1 2.1012 6.0452 1.6922 31 1 3.2885 5.8669 0.3610 32 1 0.9399 7.7415 0.5954 33 1 2.4737 7.9593 -0.2926 34 1 0.7782 10.4779 -0.6834 35 1 2.0307 5.1464 -2.0642 36 1 0.2625 4.9388 -1.8755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481687828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:04 Heat of formation + Delta-G solvation = 0.815243 kcal Electronic energy + Delta-G solvation = -17062.412137 eV Core-core repulsion = 14354.537709 eV Total energy + Delta-G solvation = -2707.874428 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.81644 -37.37140 -34.91688 -34.10278 -31.94587 -30.05921 -29.04188 -27.09243 -25.06514 -24.40532 -22.35972 -20.32029 -20.00332 -19.03870 -16.90276 -16.29268 -15.63772 -14.95603 -14.62202 -14.44727 -13.98920 -13.79236 -13.20125 -12.85596 -12.69499 -12.58299 -12.36870 -12.11927 -11.97561 -11.77230 -11.51866 -10.97677 -10.86575 -10.72738 -10.29779 -10.07708 -9.87143 -9.69745 -9.32429 -9.14112 -8.62407 -8.54034 -6.81528 -5.69273 -3.02695 1.42078 3.41946 3.43494 3.46115 3.48553 3.51129 4.53180 4.73318 4.80865 5.12654 5.26533 5.38723 5.43944 5.47525 5.59940 5.64131 5.75345 5.80443 5.83664 5.88258 6.07816 6.22645 6.36033 6.42697 6.44987 6.53244 6.65870 6.74302 7.04198 7.56104 7.60032 7.79004 7.86118 8.26970 8.50125 9.24103 9.84053 10.49279 11.42693 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044244 B = 0.005158 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.698037 B = 5427.177589 C = 5758.673139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.194 4.194 4 C -0.114 4.114 5 C 0.546 3.454 6 O -0.538 6.538 7 N -0.714 5.714 8 C 0.127 3.873 9 H 0.096 0.904 10 C -0.150 4.150 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.130 3.870 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.396 0.604 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -16.389 3.637 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 C -0.197 4.197 4 C -0.171 4.171 5 C 0.334 3.666 6 O -0.417 6.417 7 N -0.365 5.365 8 C 0.022 3.978 9 H 0.114 0.886 10 C -0.189 4.189 11 C 0.054 3.946 12 N -0.331 5.331 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.002 3.998 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.184 -16.118 3.612 17.312 hybrid contribution 0.171 0.664 -0.607 0.916 sum 5.354 -15.455 3.005 16.630 Atomic orbital electron populations 1.21016 0.91748 1.00615 1.04378 1.23575 0.97255 0.96485 0.92225 1.21542 0.96312 0.93477 1.08383 1.20766 0.91119 1.02894 1.02335 1.18394 0.87378 0.84112 0.76701 1.90785 1.13539 1.87519 1.49887 1.45981 1.10017 1.05794 1.74662 1.22294 0.95980 0.81055 0.98514 0.88577 1.23178 0.98623 0.97156 0.99895 1.21141 0.96150 0.90284 0.86996 1.44393 1.64285 1.00628 1.23778 1.19081 1.27234 0.88279 1.00879 0.90403 1.24797 1.00947 0.96696 0.98021 1.69954 1.48972 1.11868 1.26378 0.86093 0.79183 0.80136 0.80215 1.21565 1.21674 1.20697 1.21820 0.98311 0.86225 0.93413 0.89995 0.93326 0.90140 0.86131 0.91175 0.91350 0.91576 0.76888 0.91674 0.92135 0.93246 0.93602 0.93761 0.96371 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.45 36.00 0.30 -1.12 16 2 C -0.08 -0.80 9.95 -36.13 -0.36 -1.16 16 3 C -0.19 -2.27 6.00 -102.85 -0.62 -2.89 16 4 C -0.11 -0.96 9.61 36.00 0.35 -0.61 16 5 C 0.55 8.50 7.72 -12.67 -0.10 8.41 16 6 O -0.54 -10.18 12.71 5.27 0.07 -10.12 16 7 N -0.71 -10.75 5.14 -52.91 -0.27 -11.02 16 8 C 0.13 2.38 3.42 -65.78 -0.23 2.15 16 9 H 0.10 1.99 7.54 -51.93 -0.39 1.60 16 10 C -0.15 -2.75 6.60 -24.90 -0.16 -2.92 16 11 C 0.18 4.38 5.37 -3.07 -0.02 4.36 16 12 N -0.60 -15.92 3.39 -170.07 -0.58 -16.50 16 13 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 14 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.41 10.31 55.49 0.57 -26.83 16 17 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.13 2.87 6.93 -2.52 -0.02 2.86 16 22 H 0.08 1.13 7.22 -51.93 -0.37 0.75 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 1.08 7.22 -51.93 -0.38 0.70 16 25 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.07 0.54 6.71 -51.93 -0.35 0.19 16 29 H 0.40 4.83 6.67 -40.82 -0.27 4.56 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 32 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 33 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 34 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -32.28 293.46 -7.36 -39.64 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.45 Total: 0.87 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.10 Total: 2.08 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.28 Total: -54.36 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.28 -7.36 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481687828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.451 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds