Wall clock time and date at job start Sun Mar 29 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32994 * 119.99990 * 2 1 4 4 C 1.50699 * 120.00020 * 359.97438 * 3 2 1 5 5 C 1.47097 * 119.99981 * 180.02562 * 3 2 1 6 6 O 1.21614 * 120.00497 * 359.97438 * 5 3 2 7 7 N 1.34782 * 120.00029 * 180.02562 * 5 3 2 8 8 C 1.46495 * 119.99935 * 179.97438 * 7 5 3 9 9 H 1.08998 * 110.89080 * 31.11965 * 8 7 5 10 10 C 1.55162 * 111.00378 * 154.99540 * 8 7 5 11 11 C 1.54327 * 102.94177 * 153.57656 * 10 8 7 12 12 N 1.47022 * 107.27046 * 337.80721 * 11 10 8 13 13 C 1.36934 * 125.64409 * 178.95937 * 12 11 10 14 14 H 1.08003 * 119.99842 * 174.79796 * 13 12 11 15 15 C 1.38810 * 120.00372 * 354.80246 * 13 12 11 16 16 N 1.31620 * 119.99899 * 7.05612 * 15 13 12 17 17 Si 1.86805 * 120.00129 * 187.05159 * 15 13 12 18 18 H 1.48496 * 109.46781 * 94.98743 * 17 15 13 19 19 H 1.48500 * 109.46992 * 214.98669 * 17 15 13 20 20 H 1.48500 * 109.47027 * 334.98829 * 17 15 13 21 21 C 1.47424 * 108.70526 * 358.94456 * 12 11 10 22 22 H 1.09000 * 109.47070 * 60.00672 * 1 2 3 23 23 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47302 * 300.00349 * 1 2 3 25 25 H 1.07997 * 120.00210 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47371 * 270.00660 * 4 3 2 27 27 H 1.08998 * 109.46909 * 150.00300 * 4 3 2 28 28 H 1.08999 * 109.46983 * 30.00030 * 4 3 2 29 29 H 0.96995 * 120.00181 * 359.97438 * 7 5 3 30 30 H 1.08999 * 110.72071 * 271.94171 * 10 8 7 31 31 H 1.08999 * 110.71813 * 35.03421 * 10 8 7 32 32 H 1.08994 * 109.87929 * 97.22777 * 11 10 8 33 33 H 1.09003 * 109.88074 * 218.39141 * 11 10 8 34 34 H 0.96996 * 119.99960 * 180.02562 * 16 15 13 35 35 H 1.09004 * 110.36135 * 265.28795 * 21 12 11 36 36 H 1.08998 * 110.36935 * 142.96455 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6429 1.1518 -0.0006 6 8 4.2510 0.0986 -0.0006 7 7 4.3168 2.3190 0.0000 8 6 5.7818 2.3190 0.0000 9 1 6.1704 1.4474 -0.5267 10 6 6.3379 3.6320 -0.6117 11 6 7.7193 3.7695 0.0626 12 7 7.6789 2.9835 1.3044 13 6 8.7159 2.8293 2.1853 14 1 8.5616 2.2996 3.1137 15 6 9.9655 3.3540 1.8851 16 7 10.1213 4.1169 0.8239 17 14 11.4260 2.9776 2.9873 18 1 12.1735 1.8174 2.4393 19 1 12.3211 4.1611 3.0442 20 1 10.9442 2.6551 4.3544 21 6 6.3371 2.3891 1.4444 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.0470 -0.9353 0.0004 26 1 1.2370 2.7713 -1.0284 27 1 2.0074 3.2166 0.5133 28 1 0.4658 2.3266 0.5129 29 1 3.8319 3.1590 0.0003 30 1 6.4439 3.5393 -1.6926 31 1 5.6968 4.4767 -0.3596 32 1 8.4943 3.3803 -0.5975 33 1 7.9168 4.8164 0.2928 34 1 10.9945 4.4832 0.6139 35 1 5.7037 3.0242 2.0639 36 1 6.4078 1.3893 1.8726 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481687829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:06 Heat of formation + Delta-G solvation = -25.658926 kcal Electronic energy + Delta-G solvation = -16893.237106 eV Core-core repulsion = 14184.214672 eV Total energy + Delta-G solvation = -2709.022434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05351 -39.02046 -36.43117 -35.68086 -33.78914 -31.18179 -30.20417 -28.68313 -27.06863 -26.37620 -23.15735 -22.08484 -21.67323 -19.65485 -18.86076 -17.94205 -17.48543 -16.72513 -16.18206 -15.85887 -15.74306 -14.72942 -14.46707 -14.30001 -14.20300 -13.98572 -13.71456 -13.31031 -13.30617 -12.98111 -12.81590 -12.77816 -12.44187 -12.17441 -12.10787 -12.03465 -11.85007 -11.60976 -10.93131 -10.72298 -10.21546 -9.86434 -8.94793 -7.90167 -5.25373 0.41533 1.44058 1.47020 1.55575 2.15168 2.27015 2.49102 3.28856 3.64167 3.66856 3.91520 4.02679 4.04277 4.17089 4.33066 4.50609 4.55598 4.69391 4.79528 4.82272 4.87726 4.93744 4.95576 5.06297 5.10741 5.20593 5.39303 5.48597 5.53977 5.61063 5.69247 5.72711 6.15724 6.59733 7.06282 7.25165 7.71357 8.35588 9.20527 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052558 B = 0.004774 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.616798 B = 5863.749606 C = 6140.120284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.113 4.113 5 C 0.542 3.458 6 O -0.598 6.598 7 N -0.697 5.697 8 C 0.143 3.857 9 H 0.072 0.928 10 C -0.127 4.127 11 C 0.183 3.817 12 N -0.626 5.626 13 C -0.252 4.252 14 H 0.077 0.923 15 C -0.060 4.060 16 N -0.946 5.946 17 Si 0.979 3.021 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.269 1.269 21 C 0.129 3.871 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.416 0.584 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.250 0.750 35 H 0.032 0.968 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 -1.508 -3.607 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.170 4.170 5 C 0.332 3.668 6 O -0.480 6.480 7 N -0.349 5.349 8 C 0.036 3.964 9 H 0.090 0.910 10 C -0.166 4.166 11 C 0.058 3.942 12 N -0.353 5.353 13 C -0.381 4.381 14 H 0.095 0.905 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.807 3.193 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.194 1.194 21 C 0.002 3.998 22 H 0.109 0.891 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.255 0.745 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -20.412 -2.141 -3.586 20.835 hybrid contribution 1.363 0.047 0.568 1.478 sum -19.049 -2.095 -3.018 19.400 Atomic orbital electron populations 1.21036 0.88982 1.04125 1.03877 1.23801 0.98347 0.96797 0.90358 1.21504 0.90255 0.99021 1.09759 1.20885 1.00385 0.91942 1.03749 1.19205 0.89503 0.83117 0.74949 1.90764 1.71508 1.33050 1.52705 1.45719 1.05860 1.09248 1.74062 1.21810 0.79747 0.98920 0.95891 0.91003 1.22995 0.96851 0.96126 1.00596 1.20957 0.92765 0.94146 0.86317 1.44680 1.08973 1.57446 1.24219 1.19431 0.88773 1.30730 0.99129 0.90495 1.25664 1.00036 0.99788 0.99826 1.70163 1.22783 1.37066 1.29416 0.85055 0.78987 0.76957 0.78300 1.21466 1.21494 1.19371 1.21923 0.86595 0.95525 0.95755 0.89117 0.90608 0.89144 0.88000 0.89465 0.91339 0.88923 0.74517 0.89301 0.88861 0.96638 0.96412 0.94105 0.94995 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.91 71.23 0.63 -0.66 16 2 C -0.07 -1.43 9.84 24.52 0.24 -1.19 16 3 C -0.20 -4.38 6.00 -18.71 -0.11 -4.49 16 4 C -0.11 -1.44 9.14 71.24 0.65 -0.79 16 5 C 0.54 17.10 7.75 86.57 0.67 17.77 16 6 O -0.60 -24.84 15.86 -4.07 -0.06 -24.91 16 7 N -0.70 -20.25 5.14 -439.56 -2.26 -22.51 16 8 C 0.14 5.39 3.42 46.39 0.16 5.55 16 9 H 0.07 3.10 7.54 -2.39 -0.02 3.09 16 10 C -0.13 -4.52 6.60 31.79 0.21 -4.31 16 11 C 0.18 9.16 5.38 86.73 0.47 9.63 16 12 N -0.63 -33.98 3.39 -691.99 -2.35 -36.33 16 13 C -0.25 -14.87 10.26 84.03 0.86 -14.01 16 14 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 15 C -0.06 -3.49 5.48 84.86 0.46 -3.03 16 16 N -0.95 -57.62 10.36 21.65 0.22 -57.40 16 17 Si 0.98 46.99 29.56 68.60 2.03 49.02 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.13 5.82 6.93 86.85 0.60 6.42 16 22 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.72 7.40 -2.39 -0.02 0.70 16 25 H 0.10 2.47 7.49 -2.91 -0.02 2.45 16 26 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 0.84 6.70 -2.39 -0.02 0.82 16 28 H 0.09 0.81 6.49 -2.39 -0.02 0.80 16 29 H 0.42 8.91 6.67 -92.71 -0.62 8.29 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 32 H 0.02 0.87 7.30 -2.39 -0.02 0.85 16 33 H 0.02 0.96 7.61 -2.39 -0.02 0.95 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.25 295.50 2.88 -72.38 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.45 Total: 8.86 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.85 Total: 10.89 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.39 Total: -116.24 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.25 2.88 -72.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481687829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.718 kcal (2) G-P(sol) polarization free energy of solvation -75.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds