Wall clock time and date at job start Sun Mar 29 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50698 * 119.99741 * 2 1 4 4 C 1.32989 * 120.00019 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00276 * 3.14163 * 4 2 1 6 6 O 1.21620 * 120.00043 * 5.29545 * 5 4 2 7 7 N 1.34783 * 120.00345 * 185.29393 * 5 4 2 8 8 C 1.46494 * 119.99985 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47129 * 174.94737 * 8 7 5 10 10 N 1.46497 * 115.54833 * 80.23938 * 9 8 7 11 11 C 1.36942 * 120.00020 * 65.13896 * 10 9 8 12 12 H 1.08001 * 119.99845 * 354.94886 * 11 10 9 13 13 C 1.38810 * 120.00116 * 174.68144 * 11 10 9 14 14 N 1.31617 * 119.99970 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47192 * 60.00128 * 15 13 11 17 17 H 1.48504 * 109.47279 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47118 * 300.00234 * 15 13 11 19 19 C 1.52996 * 117.49779 * 225.91460 * 9 8 7 20 20 C 1.53001 * 117.49633 * 294.57306 * 9 8 7 21 21 H 1.09005 * 109.46676 * 238.23536 * 1 2 3 22 22 H 1.08997 * 109.47527 * 358.23113 * 1 2 3 23 23 H 1.09000 * 109.47294 * 118.23622 * 1 2 3 24 24 H 1.09000 * 109.47570 * 270.00058 * 3 2 1 25 25 H 1.09000 * 109.47476 * 30.00301 * 3 2 1 26 26 H 1.09004 * 109.47163 * 150.00321 * 3 2 1 27 27 H 1.08003 * 119.99842 * 183.14636 * 4 2 1 28 28 H 0.97000 * 119.99430 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.47267 * 54.94751 * 8 7 5 30 30 H 1.09005 * 109.47427 * 294.94718 * 8 7 5 31 31 H 0.97002 * 120.00115 * 245.13084 * 10 9 8 32 32 H 0.97004 * 120.00133 * 179.97438 * 14 13 11 33 33 H 1.09004 * 117.49398 * 215.00163 * 19 9 8 34 34 H 1.09001 * 117.49904 * 0.02562 * 19 9 8 35 35 H 1.08996 * 117.49830 * 359.97438 * 20 9 8 36 36 H 1.09002 * 117.49751 * 144.97209 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4382 -2.4247 -0.0709 6 8 0.2318 -2.4235 -0.2256 7 7 2.1026 -3.5924 0.0360 8 6 1.3719 -4.8601 -0.0347 9 6 2.3655 -6.0234 -0.0137 10 7 2.8787 -6.3922 1.3079 11 6 2.0293 -6.8974 2.2558 12 1 0.9686 -6.9480 2.0585 13 6 2.5320 -7.3496 3.4681 14 7 3.8252 -7.2933 3.7063 15 14 1.3732 -8.0381 4.7613 16 1 0.6574 -9.2157 4.2081 17 1 2.1530 -8.4487 5.9565 18 1 0.3877 -6.9965 5.1477 19 6 2.1581 -7.1480 -1.0301 20 6 3.3160 -6.1622 -1.2046 21 1 -0.3633 -0.5410 0.8738 22 1 -0.3634 1.0271 0.0317 23 1 -0.3634 -0.4862 -0.9054 24 1 2.4421 1.6199 -1.0276 25 1 1.6714 2.0648 0.5139 26 1 3.2129 1.1748 0.5138 27 1 3.2507 -1.1524 0.0508 28 1 3.0648 -3.5934 0.1589 29 1 0.7919 -4.8943 -0.9569 30 1 0.7002 -4.9405 0.8201 31 1 3.8203 -6.2786 1.5116 32 1 4.1765 -7.6090 4.5536 33 1 2.4035 -8.1624 -0.7154 34 1 1.3141 -7.0589 -1.7140 35 1 3.2332 -5.4250 -2.0032 36 1 4.3233 -6.5275 -1.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483713062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:37 Heat of formation + Delta-G solvation = 7.863131 kcal Electronic energy + Delta-G solvation = -16733.061064 eV Core-core repulsion = 14025.492255 eV Total energy + Delta-G solvation = -2707.568809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50027 -37.58252 -35.37398 -33.62981 -32.98980 -29.70107 -28.55635 -27.74108 -25.81115 -23.88702 -21.93684 -20.72721 -19.42245 -18.24930 -17.08208 -16.67444 -15.70896 -15.10059 -14.71528 -14.28065 -14.11592 -13.87454 -13.56148 -13.30878 -13.06415 -12.49094 -12.32969 -11.93362 -11.88046 -11.71341 -11.53572 -10.99124 -10.93835 -10.85453 -10.29151 -10.26566 -9.69515 -9.46564 -9.23700 -9.11083 -8.82528 -8.43389 -7.06168 -5.82924 -3.13420 1.51462 3.42850 3.47115 3.48287 3.57314 3.66770 4.45193 4.61357 4.82044 4.87260 5.25170 5.27174 5.31318 5.37282 5.48739 5.50142 5.65890 5.68097 5.72726 5.84018 5.93362 6.11549 6.14797 6.26697 6.44558 6.53472 6.59341 6.61472 6.69128 6.79955 6.96074 7.69564 8.00870 8.35394 8.65808 9.46477 10.00010 10.35397 11.39032 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.005816 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.299830 B = 4813.228309 C = 5374.663412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.124 4.124 4 C -0.227 4.227 5 C 0.539 3.461 6 O -0.554 6.554 7 N -0.708 5.708 8 C 0.149 3.851 9 C 0.128 3.872 10 N -0.689 5.689 11 C -0.238 4.238 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.933 5.933 15 Si 0.908 3.092 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C -0.187 4.187 20 C -0.185 4.185 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.400 0.600 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 12.534 -9.391 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.181 4.181 4 C -0.248 4.248 5 C 0.328 3.672 6 O -0.435 6.435 7 N -0.357 5.357 8 C 0.023 3.977 9 C 0.033 3.967 10 N -0.329 5.329 11 C -0.369 4.369 12 H 0.090 0.910 13 C -0.205 4.205 14 N -0.580 5.580 15 Si 0.739 3.261 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.212 1.212 19 C -0.228 4.228 20 C -0.223 4.223 21 H 0.097 0.903 22 H 0.067 0.933 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.234 0.766 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.969 12.413 -9.335 15.656 hybrid contribution 0.377 -0.544 0.951 1.159 sum -1.592 11.868 -8.384 14.618 Atomic orbital electron populations 1.21013 0.90924 1.00623 1.04507 1.22494 0.96863 0.94354 0.90965 1.20990 1.00062 0.94425 1.02605 1.22447 1.00060 0.92264 1.10033 1.18527 0.87241 0.84372 0.77049 1.90738 1.14317 1.87833 1.50616 1.45825 1.11549 1.05579 1.72754 1.21208 0.93961 0.81225 1.01300 1.20185 0.97468 0.94751 0.84254 1.41772 1.08983 1.75160 1.06942 1.19130 0.90412 1.33170 0.94193 0.91029 1.24750 0.95885 1.01584 0.98325 1.69649 1.10877 1.52738 1.24766 0.86251 0.79748 0.79014 0.81100 1.21122 1.21671 1.21161 1.23369 0.99043 0.96880 1.03518 1.23071 0.95927 1.03191 1.00129 0.90314 0.93333 0.89672 0.90565 0.91227 0.91226 0.85860 0.76565 0.92246 0.90793 0.77763 0.93375 0.88623 0.89962 0.89506 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 8.33 36.00 0.30 -1.14 16 2 C -0.04 -0.53 6.11 -101.17 -0.62 -1.15 16 3 C -0.12 -1.03 9.99 36.00 0.36 -0.67 16 4 C -0.23 -3.01 9.63 -37.81 -0.36 -3.37 16 5 C 0.54 9.06 7.71 -12.66 -0.10 8.97 16 6 O -0.55 -10.75 13.14 5.26 0.07 -10.68 16 7 N -0.71 -11.86 5.51 -61.49 -0.34 -12.20 16 8 C 0.15 2.79 5.72 -4.04 -0.02 2.77 16 9 C 0.13 2.48 2.15 -131.82 -0.28 2.20 16 10 N -0.69 -16.66 5.49 -47.23 -0.26 -16.92 16 11 C -0.24 -6.49 9.56 -15.06 -0.14 -6.63 16 12 H 0.07 1.93 7.75 -52.49 -0.41 1.52 16 13 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 14 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 15 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.19 -3.31 10.11 -26.70 -0.27 -3.58 16 20 C -0.19 -3.01 10.14 -26.69 -0.27 -3.28 16 21 H 0.08 1.14 7.46 -51.93 -0.39 0.76 16 22 H 0.05 0.48 7.93 -51.93 -0.41 0.07 16 23 H 0.08 1.19 7.01 -51.93 -0.36 0.83 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 26 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.12 1.35 8.05 -52.48 -0.42 0.93 16 28 H 0.40 6.12 8.46 -40.82 -0.35 5.78 16 29 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 30 H 0.07 1.61 7.72 -51.93 -0.40 1.21 16 31 H 0.39 9.92 8.04 -40.82 -0.33 9.59 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.70 308.45 -7.25 -37.95 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.56 Total: 12.97 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.51 Total: -6.26 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.13 Total: -55.98 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.70 -7.25 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483713062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.812 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds