Wall clock time and date at job start Sun Mar 29 2020 22:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00013 * 2 1 4 4 C 1.53000 * 109.47155 * 125.00162 * 3 2 1 5 5 C 1.50698 * 109.47155 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99902 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00207 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00008 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46948 * 174.94227 * 8 7 5 10 10 N 1.46505 * 115.55024 * 80.38544 * 9 8 7 11 11 C 1.36942 * 119.99583 * 65.27855 * 10 9 8 12 12 H 1.08007 * 119.99964 * 354.96284 * 11 10 9 13 13 C 1.38809 * 119.99798 * 174.68484 * 11 10 9 14 14 N 1.31619 * 120.00146 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99839 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47378 * 89.99754 * 15 13 11 17 17 H 1.48498 * 109.47141 * 210.00161 * 15 13 11 18 18 H 1.48500 * 109.47218 * 329.99749 * 15 13 11 19 19 C 1.52999 * 117.50098 * 226.06177 * 9 8 7 20 20 C 1.53002 * 117.49982 * 294.71995 * 9 8 7 21 21 H 1.07997 * 120.00380 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.00110 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99968 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47177 * 4.99772 * 3 2 1 25 25 H 1.08998 * 109.47287 * 245.00492 * 3 2 1 26 26 H 1.09002 * 109.47024 * 60.00137 * 4 3 2 27 27 H 1.09002 * 109.46875 * 300.00061 * 4 3 2 28 28 H 0.97001 * 119.99786 * 359.97438 * 7 5 4 29 29 H 1.08994 * 109.47255 * 54.94194 * 8 7 5 30 30 H 1.08999 * 109.46673 * 294.93754 * 8 7 5 31 31 H 0.96998 * 120.00497 * 245.27841 * 10 9 8 32 32 H 0.97000 * 119.99696 * 180.02562 * 14 13 11 33 33 H 1.08998 * 117.49974 * 215.00780 * 19 9 8 34 34 H 1.09000 * 117.49520 * 0.02562 * 19 9 8 35 35 H 1.09000 * 117.49687 * 359.97438 * 20 9 8 36 36 H 1.08995 * 117.49858 * 144.97063 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7881 2.6384 1.1820 6 8 3.5696 3.4648 0.3215 7 7 4.7051 2.8871 2.1378 8 6 5.4367 4.1563 2.1384 9 6 6.3159 4.2376 3.3880 10 7 7.5849 3.5089 3.3163 11 6 8.5493 3.8997 2.4261 12 1 8.3445 4.6921 1.7214 13 6 9.7919 3.2811 2.4333 14 7 10.0431 2.3188 3.2953 15 14 11.1077 3.8146 1.2194 16 1 11.9221 4.9023 1.8183 17 1 11.9838 2.6590 0.8994 18 1 10.4633 4.3065 -0.0248 19 6 6.2959 5.5452 4.1821 20 6 5.6113 4.2972 4.7449 21 1 -0.5400 0.9352 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6212 1.4026 -0.9314 26 1 3.7400 0.5065 1.0920 27 1 2.4772 1.2355 2.1130 28 1 4.8801 2.2260 2.8257 29 1 4.7279 4.9843 2.1384 30 1 6.0637 4.2146 1.2487 31 1 7.7420 2.7498 3.8994 32 1 10.9116 1.8869 3.3005 33 1 7.2270 5.8635 4.6510 34 1 5.6562 6.3475 3.8144 35 1 4.5214 4.2790 4.7472 36 1 6.0917 3.7941 5.5839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483720651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:25 Heat of formation + Delta-G solvation = -13.772402 kcal Electronic energy + Delta-G solvation = -16529.128551 eV Core-core repulsion = 13820.621555 eV Total energy + Delta-G solvation = -2708.506996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79202 -39.02666 -36.27819 -35.28076 -34.78154 -31.73053 -31.63517 -28.10080 -25.96528 -24.84193 -23.23139 -21.25585 -20.64024 -20.56148 -19.14880 -17.97159 -17.32044 -16.73643 -16.60202 -16.02951 -15.70104 -15.42904 -14.99235 -14.64689 -14.49684 -13.72503 -13.57665 -13.36745 -13.00457 -12.94746 -12.80438 -12.29656 -12.21483 -12.01834 -11.97571 -11.87009 -11.59697 -11.06149 -10.97641 -10.57267 -10.18705 -9.98248 -9.03920 -7.97384 -5.26131 1.42197 1.45920 1.46307 1.54654 1.71062 2.28396 2.52298 3.10153 3.36835 3.66106 3.79992 3.85658 4.02349 4.18478 4.22122 4.31031 4.41429 4.49370 4.69445 4.81148 4.83710 4.93268 4.96705 5.03741 5.10760 5.18306 5.24504 5.38236 5.53401 5.54084 5.78559 5.93666 6.25940 6.66080 7.31788 7.32741 8.05210 8.29161 9.24982 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.005197 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.077080 B = 5386.135752 C = 5967.569366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.077 4.077 4 C -0.126 4.126 5 C 0.502 3.498 6 O -0.595 6.595 7 N -0.707 5.707 8 C 0.159 3.841 9 C 0.100 3.900 10 N -0.698 5.698 11 C -0.232 4.232 12 H 0.068 0.932 13 C -0.067 4.067 14 N -0.964 5.964 15 Si 0.964 3.036 16 H -0.287 1.287 17 H -0.294 1.294 18 H -0.276 1.276 19 C -0.187 4.187 20 C -0.151 4.151 21 H 0.095 0.905 22 H 0.113 0.887 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.411 0.589 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.378 0.622 32 H 0.251 0.749 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.864 -3.191 -0.148 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.115 4.115 4 C -0.165 4.165 5 C 0.291 3.709 6 O -0.477 6.477 7 N -0.358 5.358 8 C 0.032 3.968 9 C 0.008 3.992 10 N -0.337 5.337 11 C -0.364 4.364 12 H 0.086 0.914 13 C -0.260 4.260 14 N -0.614 5.614 15 Si 0.794 3.206 16 H -0.214 1.214 17 H -0.221 1.221 18 H -0.201 1.201 19 C -0.227 4.227 20 C -0.188 4.188 21 H 0.113 0.887 22 H 0.131 0.869 23 H 0.140 0.860 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.247 0.753 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.211 0.789 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.887 -2.523 -0.880 17.097 hybrid contribution 1.467 -0.181 -0.155 1.487 sum -15.420 -2.704 -1.035 15.689 Atomic orbital electron populations 1.24039 0.95828 1.02581 1.00371 1.22981 0.96323 0.97930 1.00557 1.20435 0.97542 0.96027 0.97468 1.21634 0.99013 0.93745 1.02140 1.21446 0.79512 0.89795 0.80155 1.90654 1.67917 1.50212 1.38891 1.45923 1.39349 1.19882 1.30609 1.20925 0.92764 0.86061 0.97019 1.20361 0.88652 0.98782 0.91446 1.41811 1.12184 1.35027 1.44696 1.19412 0.92208 1.14660 1.10128 0.91415 1.25421 0.99621 0.99633 1.01283 1.69781 1.23107 1.28433 1.40104 0.85276 0.79488 0.76859 0.78970 1.21384 1.22088 1.20117 1.23378 1.02155 0.92330 1.04862 1.23140 0.99913 1.00839 0.94913 0.88683 0.86910 0.85997 0.91914 0.92080 0.87197 0.86284 0.75348 0.91168 0.94617 0.78852 0.93978 0.90432 0.87646 0.86337 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.16 -2.67 9.52 25.65 0.24 -2.43 16 3 C -0.08 -1.65 4.95 29.85 0.15 -1.50 16 4 C -0.13 -2.59 5.68 29.85 0.17 -2.42 16 5 C 0.50 15.27 7.83 87.66 0.69 15.96 16 6 O -0.60 -23.11 15.98 -3.04 -0.05 -23.16 16 7 N -0.71 -21.49 5.51 -463.06 -2.55 -24.04 16 8 C 0.16 5.71 5.73 86.38 0.49 6.21 16 9 C 0.10 3.69 2.15 3.60 0.01 3.70 16 10 N -0.70 -33.29 5.49 -303.32 -1.67 -34.96 16 11 C -0.23 -12.62 9.56 84.03 0.80 -11.82 16 12 H 0.07 3.67 7.77 -2.91 -0.02 3.65 16 13 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 14 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 15 Si 0.96 46.13 29.55 68.60 2.03 48.15 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 C -0.19 -6.16 10.11 30.62 0.31 -5.85 16 20 C -0.15 -4.34 10.14 30.62 0.31 -4.03 16 21 H 0.09 1.42 7.84 -2.91 -0.02 1.40 16 22 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 23 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 24 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 25 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.41 10.86 8.48 -92.71 -0.79 10.08 16 29 H 0.07 2.37 7.94 -2.39 -0.02 2.35 16 30 H 0.04 1.55 7.73 -2.39 -0.02 1.53 16 31 H 0.38 19.16 8.04 -92.71 -0.75 18.42 16 32 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.11 2.98 8.08 -2.39 -0.02 2.96 16 35 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -66.73 313.26 2.19 -64.54 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.47 Total: 33.77 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.61 Total: -7.36 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.94 Total: -115.94 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -66.73 2.19 -64.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483720651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds