Wall clock time and date at job start Sun Mar 29 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47207 * 269.99786 * 3 2 1 5 5 H 1.48500 * 109.47249 * 29.99814 * 3 2 1 6 6 H 1.48501 * 109.47226 * 149.99502 * 3 2 1 7 7 C 1.38808 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00328 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99805 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47107 * 184.92972 * 10 9 7 12 12 H 1.08994 * 109.86622 * 54.42272 * 11 10 9 13 13 C 1.54316 * 110.01045 * 293.32195 * 11 10 9 14 14 C 1.55158 * 102.93947 * 218.31631 * 13 11 10 15 15 C 1.54687 * 101.67916 * 35.33410 * 14 13 11 16 16 N 1.47018 * 109.88011 * 175.43233 * 11 10 9 17 17 C 1.34782 * 125.65468 * 298.47741 * 16 11 10 18 18 O 1.21287 * 119.99397 * 354.93938 * 17 16 11 19 19 C 1.50694 * 120.00493 * 174.93692 * 17 16 11 20 20 C 1.53001 * 117.51775 * 111.28071 * 19 17 16 21 21 C 1.53000 * 117.49973 * 179.91320 * 19 17 16 22 22 H 0.97001 * 119.99818 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00453 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47359 * 64.93646 * 10 9 7 25 25 H 1.08996 * 109.47633 * 304.93188 * 10 9 7 26 26 H 1.08998 * 110.72321 * 336.68090 * 13 11 10 27 27 H 1.08998 * 110.71914 * 99.78089 * 13 11 10 28 28 H 1.09004 * 111.00732 * 153.58157 * 14 13 11 29 29 H 1.09008 * 111.00295 * 277.38956 * 14 13 11 30 30 H 1.08998 * 110.39364 * 204.36147 * 15 14 13 31 31 H 1.09007 * 110.23659 * 82.11216 * 15 14 13 32 32 H 1.09004 * 115.54978 * 325.58684 * 19 17 16 33 33 H 1.08994 * 117.50270 * 214.97032 * 20 19 17 34 34 H 1.08997 * 117.49987 * 359.97438 * 20 19 17 35 35 H 1.08992 * 117.49913 * 359.97438 * 21 19 17 36 36 H 1.09000 * 117.49600 * 145.00269 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0683 -4.8170 -0.1234 12 1 0.4381 -4.6742 -1.0012 13 6 0.1920 -4.9013 1.1439 14 6 0.0492 -6.4302 1.3666 15 6 1.4347 -6.9439 0.9094 16 7 1.7992 -6.0878 -0.2342 17 6 2.6560 -6.4180 -1.2208 18 8 2.8084 -5.6733 -2.1659 19 6 3.4246 -7.7122 -1.1497 20 6 3.0668 -8.8034 -2.1608 21 6 4.3800 -8.0307 -2.3015 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 0.0005 24 1 2.6167 -3.7537 0.9314 25 1 2.7493 -3.6772 -0.8419 26 1 0.6931 -4.4333 1.9912 27 1 -0.7811 -4.4415 0.9712 28 1 -0.1263 -6.6572 2.4182 29 1 -0.7432 -6.8435 0.7424 30 1 1.3693 -7.9863 0.5974 31 1 2.1622 -6.8328 1.7135 32 1 3.7187 -8.0300 -0.1493 33 1 3.1256 -9.8389 -1.8258 34 1 2.2750 -8.5854 -2.8774 35 1 4.4522 -7.3044 -3.1109 36 1 5.3026 -8.5581 -2.0590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483916780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:25 Heat of formation + Delta-G solvation = 2.846222 kcal Electronic energy + Delta-G solvation = -17140.035567 eV Core-core repulsion = 14432.249209 eV Total energy + Delta-G solvation = -2707.786358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13691 -37.86968 -35.85888 -34.44198 -31.60006 -31.26071 -28.73933 -25.27320 -24.66537 -22.61563 -22.45054 -21.92790 -20.26434 -18.70271 -17.47800 -16.80923 -16.33918 -15.19212 -15.05122 -14.44378 -13.98904 -13.69921 -13.43973 -13.18591 -12.81923 -12.67936 -12.52717 -12.03835 -11.66520 -11.54002 -11.16874 -10.87658 -10.80293 -10.71738 -10.60266 -10.47698 -10.35170 -10.00276 -9.72770 -9.53887 -8.80201 -8.38300 -6.85520 -5.70557 -2.98571 2.63947 3.08450 3.48878 3.53718 3.55383 3.80298 4.43892 4.64375 4.68090 4.69513 4.79202 4.90273 5.03936 5.11811 5.42166 5.43142 5.48640 5.60838 5.64308 5.65323 5.81789 5.83362 5.97077 6.02770 6.10691 6.11998 6.21675 6.45332 6.59648 6.87603 7.02245 7.73965 7.77969 8.39760 8.48929 9.59531 10.16096 10.52095 11.52645 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.005838 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.329329 B = 4794.879745 C = 5478.124261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.102 3.898 16 N -0.610 5.610 17 C 0.553 3.447 18 O -0.530 6.530 19 C -0.188 4.188 20 C -0.155 4.155 21 C -0.149 4.149 22 H 0.254 0.746 23 H 0.383 0.617 24 H 0.015 0.985 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -19.997 2.161 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.019 3.981 11 C 0.027 3.973 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.344 5.344 17 C 0.341 3.659 18 O -0.406 6.406 19 C -0.209 4.209 20 C -0.193 4.193 21 C -0.186 4.186 22 H 0.064 0.936 23 H 0.217 0.783 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.044 -19.486 1.595 19.787 hybrid contribution 0.147 0.940 0.165 0.966 sum 3.192 -18.546 1.759 18.901 Atomic orbital electron populations 1.69659 1.05074 1.25556 1.58166 1.24713 0.95539 0.97595 1.03179 0.86170 0.78609 0.83784 0.77544 1.21722 1.21784 1.20801 1.19228 0.91042 0.84043 1.42212 0.91274 1.42200 1.05744 0.99715 1.89582 1.20930 0.93662 0.85213 0.98314 1.21824 0.93519 0.83468 0.98506 0.90621 1.22670 1.00644 0.95030 0.97611 1.22758 0.96133 0.96617 1.01725 1.22247 0.96643 0.94513 0.88728 1.48437 1.44186 1.17423 1.24355 1.19265 0.78756 0.86595 0.81247 1.90744 1.65057 1.52390 1.32435 1.22184 1.05274 0.95943 0.97500 1.22915 0.99984 0.95687 1.00676 1.22949 0.93585 1.02627 0.99439 0.93584 0.78322 0.96755 0.94691 0.89931 0.89758 0.89970 0.90862 0.90829 0.91504 0.86119 0.88000 0.88330 0.87337 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.99 13.06 55.49 0.72 -28.27 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.54 5.45 -59.91 -0.33 -19.87 16 10 C 0.15 3.34 5.66 -4.04 -0.02 3.31 16 11 C 0.13 2.36 2.92 -66.96 -0.20 2.16 16 12 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.12 -1.81 6.08 -24.90 -0.15 -1.96 16 14 C -0.13 -1.44 7.07 -24.70 -0.17 -1.61 16 15 C 0.10 1.11 6.47 -2.65 -0.02 1.10 16 16 N -0.61 -9.41 3.07 -163.16 -0.50 -9.91 16 17 C 0.55 9.11 7.36 -10.99 -0.08 9.03 16 18 O -0.53 -11.16 15.43 5.55 0.09 -11.08 16 19 C -0.19 -2.18 5.28 -91.77 -0.48 -2.67 16 20 C -0.16 -1.47 10.24 -26.73 -0.27 -1.74 16 21 C -0.15 -1.57 10.04 -26.73 -0.27 -1.84 16 22 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.38 10.53 7.44 -40.82 -0.30 10.23 16 24 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 25 H 0.04 0.89 6.89 -51.93 -0.36 0.53 16 26 H 0.08 1.31 7.79 -51.93 -0.40 0.91 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.13 7.89 -51.93 -0.41 0.72 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.11 1.37 7.67 -51.93 -0.40 0.97 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -34.37 299.27 -8.07 -42.44 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.62 Total: 5.78 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.92 Total: -1.82 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.10 Total: -58.05 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.37 -8.07 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483916780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.285 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds