Wall clock time and date at job start Sun Mar 29 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99659 * 2 1 4 4 H 1.48501 * 109.46660 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47122 * 299.99978 * 3 2 1 6 6 H 1.48497 * 109.47314 * 60.00466 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99414 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99995 * 359.73191 * 7 2 1 10 10 C 1.46500 * 119.99907 * 180.27261 * 9 7 2 11 11 C 1.52993 * 109.47302 * 175.01338 * 10 9 7 12 12 H 1.08999 * 109.87824 * 304.45179 * 11 10 9 13 13 C 1.54329 * 109.88311 * 65.46667 * 11 10 9 14 14 C 1.55157 * 102.94026 * 141.60789 * 13 11 10 15 15 C 1.54905 * 101.58553 * 324.49935 * 14 13 11 16 16 N 1.47025 * 109.88599 * 183.43492 * 11 10 9 17 17 C 1.34779 * 125.64664 * 61.60728 * 16 11 10 18 18 O 1.21283 * 120.00258 * 5.09168 * 17 16 11 19 19 C 1.50700 * 120.00134 * 185.09527 * 17 16 11 20 20 C 1.52997 * 117.49893 * 248.75037 * 19 17 16 21 21 C 1.52995 * 117.49966 * 180.08481 * 19 17 16 22 22 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 23 23 H 0.96993 * 120.00447 * 0.26219 * 9 7 2 24 24 H 1.09007 * 109.47116 * 295.01711 * 10 9 7 25 25 H 1.09004 * 109.47184 * 55.01083 * 10 9 7 26 26 H 1.08997 * 110.72017 * 259.97362 * 13 11 10 27 27 H 1.08998 * 110.71772 * 23.24978 * 13 11 10 28 28 H 1.09002 * 110.99872 * 82.57640 * 14 13 11 29 29 H 1.08996 * 111.00320 * 206.41976 * 14 13 11 30 30 H 1.09000 * 110.36278 * 155.84621 * 15 14 13 31 31 H 1.08994 * 110.36681 * 278.06315 * 15 14 13 32 32 H 1.09006 * 115.54845 * 34.41193 * 19 17 16 33 33 H 1.09005 * 117.49796 * 359.97438 * 20 19 17 34 34 H 1.09002 * 117.50288 * 145.02082 * 20 19 17 35 35 H 1.09002 * 117.49908 * 214.97697 * 21 19 17 36 36 H 1.08995 * 117.50096 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0066 10 6 2.0581 -3.6567 0.0132 11 6 1.0687 -4.8162 0.1445 12 1 0.4524 -4.6788 1.0330 13 6 0.1725 -4.8862 -1.1100 14 6 0.0237 -6.4124 -1.3460 15 6 1.4195 -6.9309 -0.9187 16 7 1.7990 -6.0891 0.2347 17 6 2.6694 -6.4282 1.2062 18 8 2.8363 -5.6915 2.1551 19 6 3.4354 -7.7227 1.1135 20 6 3.0899 -8.8216 2.1205 21 6 4.4067 -8.0516 2.2489 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3881 0.0067 24 1 2.6162 -3.7589 -0.9175 25 1 2.7501 -3.6724 0.8553 26 1 -0.7980 -4.4294 -0.9166 27 1 0.6614 -4.4104 -1.9601 28 1 -0.7591 -6.8310 -0.7135 29 1 -0.1684 -6.6283 -2.3970 30 1 1.3601 -7.9774 -0.6196 31 1 2.1346 -6.8095 -1.7322 32 1 3.7147 -8.0326 0.1065 33 1 2.3089 -8.6081 2.8502 34 1 3.1424 -9.8544 1.7761 35 1 5.3250 -8.5783 1.9889 36 1 4.4921 -7.3315 3.0627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483916783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:27 Heat of formation + Delta-G solvation = 2.906905 kcal Electronic energy + Delta-G solvation = -17138.849920 eV Core-core repulsion = 14431.066193 eV Total energy + Delta-G solvation = -2707.783727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12101 -37.86037 -35.85515 -34.43832 -31.59304 -31.25664 -28.72767 -25.27593 -24.66391 -22.61997 -22.45464 -21.93063 -20.24977 -18.70094 -17.47603 -16.81216 -16.33373 -15.19025 -15.05048 -14.44169 -13.99092 -13.70597 -13.42785 -13.18810 -12.81913 -12.67953 -12.52889 -12.03974 -11.66626 -11.53718 -11.15723 -10.88161 -10.81131 -10.71462 -10.60476 -10.47862 -10.34809 -9.97283 -9.73581 -9.54114 -8.81032 -8.38665 -6.85730 -5.70993 -2.98983 2.63911 3.07993 3.47985 3.53709 3.56273 3.80117 4.43411 4.63968 4.67944 4.69469 4.78950 4.90263 5.04509 5.11656 5.42248 5.43140 5.48575 5.60822 5.64083 5.65262 5.81716 5.83421 5.97087 6.02570 6.10310 6.12055 6.21710 6.45577 6.59638 6.87512 7.01824 7.73938 7.78135 8.39616 8.48546 9.59202 10.15744 10.51732 11.52268 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030739 B = 0.005830 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.667615 B = 4801.481564 C = 5483.154342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.121 4.121 14 C -0.134 4.134 15 C 0.102 3.898 16 N -0.610 5.610 17 C 0.554 3.446 18 O -0.530 6.530 19 C -0.188 4.188 20 C -0.155 4.155 21 C -0.149 4.149 22 H 0.254 0.746 23 H 0.383 0.617 24 H 0.015 0.985 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -19.997 -2.177 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.027 3.973 12 H 0.094 0.906 13 C -0.159 4.159 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.344 5.344 17 C 0.342 3.658 18 O -0.407 6.407 19 C -0.209 4.209 20 C -0.193 4.193 21 C -0.186 4.186 22 H 0.064 0.936 23 H 0.217 0.783 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.039 -19.499 -1.597 19.798 hybrid contribution 0.136 0.948 -0.174 0.974 sum 3.175 -18.550 -1.771 18.903 Atomic orbital electron populations 1.69671 1.05071 1.25447 1.58255 1.24718 0.95544 0.97604 1.03203 0.86098 0.78819 0.84085 0.77133 1.20581 1.21903 1.21860 1.19277 0.91076 0.84031 1.42056 0.91214 1.42212 1.05756 0.99730 1.89561 1.20933 0.93671 0.85234 0.98305 1.21817 0.93459 0.83420 0.98649 0.90626 1.22676 1.00462 0.95078 0.97730 1.22794 0.96001 0.96643 1.01794 1.22344 0.96466 0.94723 0.88584 1.48511 1.43478 1.17724 1.24724 1.19257 0.78719 0.86531 0.81318 1.90742 1.65137 1.52887 1.31903 1.22185 1.05242 0.95846 0.97612 1.22928 1.00032 0.95622 1.00684 1.22959 0.93401 1.02613 0.99638 0.93633 0.78317 0.96758 0.94699 0.89769 0.89886 0.90833 0.89982 0.90847 0.91433 0.86128 0.88328 0.87996 0.88047 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.97 13.06 55.49 0.72 -28.25 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.23 29.55 -169.99 -5.02 18.21 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.73 -19.52 5.44 -59.91 -0.33 -19.84 16 10 C 0.15 3.33 5.64 -4.05 -0.02 3.31 16 11 C 0.13 2.35 2.94 -66.95 -0.20 2.16 16 12 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.12 -1.81 6.01 -24.89 -0.15 -1.96 16 14 C -0.13 -1.44 7.08 -24.58 -0.17 -1.61 16 15 C 0.10 1.12 6.50 -2.35 -0.02 1.10 16 16 N -0.61 -9.41 3.08 -162.76 -0.50 -9.91 16 17 C 0.55 9.11 7.37 -10.98 -0.08 9.03 16 18 O -0.53 -11.15 15.44 5.55 0.09 -11.06 16 19 C -0.19 -2.18 5.29 -91.78 -0.49 -2.66 16 20 C -0.16 -1.47 10.24 -26.69 -0.27 -1.74 16 21 C -0.15 -1.57 10.05 -26.69 -0.27 -1.84 16 22 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.38 10.51 7.39 -40.82 -0.30 10.21 16 24 H 0.01 0.33 8.06 -51.92 -0.42 -0.09 16 25 H 0.04 0.89 6.92 -51.93 -0.36 0.53 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.33 7.80 -51.93 -0.40 0.92 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.12 1.13 7.89 -51.93 -0.41 0.72 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.37 7.67 -51.93 -0.40 0.97 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -34.36 299.30 -8.07 -42.43 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.63 Total: 5.73 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.91 Total: -1.81 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.10 Total: -58.00 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.36 -8.07 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483916783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.334 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds