Wall clock time and date at job start Sun Mar 29 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99659 * 2 1 4 4 H 1.48501 * 109.46660 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47122 * 299.99978 * 3 2 1 6 6 H 1.48497 * 109.47314 * 60.00466 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99414 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99995 * 359.73191 * 7 2 1 10 10 C 1.46500 * 119.99907 * 180.27261 * 9 7 2 11 11 C 1.52993 * 109.47302 * 175.01338 * 10 9 7 12 12 H 1.08999 * 109.87824 * 304.45179 * 11 10 9 13 13 C 1.54329 * 109.88311 * 65.46667 * 11 10 9 14 14 C 1.55157 * 102.94026 * 141.60789 * 13 11 10 15 15 C 1.54905 * 101.58553 * 324.49935 * 14 13 11 16 16 N 1.47025 * 109.88599 * 183.43492 * 11 10 9 17 17 C 1.34779 * 125.64664 * 61.60728 * 16 11 10 18 18 O 1.21283 * 120.00258 * 5.09168 * 17 16 11 19 19 C 1.50700 * 120.00134 * 185.09527 * 17 16 11 20 20 C 1.52997 * 117.49893 * 248.75037 * 19 17 16 21 21 C 1.52995 * 117.49966 * 180.08481 * 19 17 16 22 22 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 23 23 H 0.96993 * 120.00447 * 0.26219 * 9 7 2 24 24 H 1.09007 * 109.47116 * 295.01711 * 10 9 7 25 25 H 1.09004 * 109.47184 * 55.01083 * 10 9 7 26 26 H 1.08997 * 110.72017 * 259.97362 * 13 11 10 27 27 H 1.08998 * 110.71772 * 23.24978 * 13 11 10 28 28 H 1.09002 * 110.99872 * 82.57640 * 14 13 11 29 29 H 1.08996 * 111.00320 * 206.41976 * 14 13 11 30 30 H 1.09000 * 110.36278 * 155.84621 * 15 14 13 31 31 H 1.08994 * 110.36681 * 278.06315 * 15 14 13 32 32 H 1.09006 * 115.54845 * 34.41193 * 19 17 16 33 33 H 1.09005 * 117.49796 * 359.97438 * 20 19 17 34 34 H 1.09002 * 117.50288 * 145.02082 * 20 19 17 35 35 H 1.09002 * 117.49908 * 214.97697 * 21 19 17 36 36 H 1.08995 * 117.50096 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0066 10 6 2.0581 -3.6567 0.0132 11 6 1.0687 -4.8162 0.1445 12 1 0.4524 -4.6788 1.0330 13 6 0.1725 -4.8862 -1.1100 14 6 0.0237 -6.4124 -1.3460 15 6 1.4195 -6.9309 -0.9187 16 7 1.7990 -6.0891 0.2347 17 6 2.6694 -6.4282 1.2062 18 8 2.8363 -5.6915 2.1551 19 6 3.4354 -7.7227 1.1135 20 6 3.0899 -8.8216 2.1205 21 6 4.4067 -8.0516 2.2489 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3881 0.0067 24 1 2.6162 -3.7589 -0.9175 25 1 2.7501 -3.6724 0.8553 26 1 -0.7980 -4.4294 -0.9166 27 1 0.6614 -4.4104 -1.9601 28 1 -0.7591 -6.8310 -0.7135 29 1 -0.1684 -6.6283 -2.3970 30 1 1.3601 -7.9774 -0.6196 31 1 2.1346 -6.8095 -1.7322 32 1 3.7147 -8.0326 0.1065 33 1 2.3089 -8.6081 2.8502 34 1 3.1424 -9.8544 1.7761 35 1 5.3250 -8.5783 1.9889 36 1 4.4921 -7.3315 3.0627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483916783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:27 Heat of formation + Delta-G solvation = -20.836808 kcal Electronic energy + Delta-G solvation = -17139.879524 eV Core-core repulsion = 14431.066193 eV Total energy + Delta-G solvation = -2708.813331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35480 -39.05896 -36.91636 -36.43914 -33.51027 -32.55657 -30.39447 -26.77491 -26.13394 -24.34448 -23.32224 -23.06728 -21.55136 -20.02635 -19.16548 -18.32073 -17.62937 -16.63304 -16.31159 -15.95542 -15.52793 -15.21812 -15.07717 -14.71527 -14.16304 -14.05851 -13.72901 -13.35974 -13.09695 -12.91566 -12.79924 -12.43848 -12.20037 -12.07571 -11.94562 -11.79354 -11.60644 -11.53122 -11.41378 -11.04870 -10.86062 -9.69609 -9.09449 -8.01504 -5.31898 1.42559 1.45060 1.45780 1.55347 1.90785 2.52222 2.91944 3.30923 3.42436 3.64307 3.80997 3.85481 3.91659 4.00273 4.09744 4.24340 4.28898 4.32283 4.50183 4.72585 4.74100 4.79215 4.88658 4.93556 4.99961 5.04651 5.11353 5.13520 5.23722 5.33481 5.39249 5.45651 6.20245 6.55851 7.15092 7.26783 7.96912 8.25612 9.22014 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030739 B = 0.005830 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.667615 B = 4801.481564 C = 5483.154342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.155 3.845 11 C 0.135 3.865 12 H 0.046 0.954 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.097 3.903 16 N -0.610 5.610 17 C 0.539 3.461 18 O -0.594 6.594 19 C -0.193 4.193 20 C -0.131 4.131 21 C -0.157 4.157 22 H 0.255 0.745 23 H 0.377 0.623 24 H 0.018 0.982 25 H 0.000 1.000 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -22.330 -3.778 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.027 3.973 11 C 0.030 3.970 12 H 0.064 0.936 13 C -0.157 4.157 14 C -0.156 4.156 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.330 3.670 18 O -0.474 6.474 19 C -0.214 4.214 20 C -0.169 4.169 21 C -0.194 4.194 22 H 0.063 0.937 23 H 0.210 0.790 24 H 0.036 0.964 25 H 0.018 0.982 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.172 0.828 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.514 -21.885 -3.235 22.400 hybrid contribution -0.004 1.669 0.361 1.707 sum 3.510 -20.216 -2.874 20.719 Atomic orbital electron populations 1.69816 1.06495 1.26319 1.58931 1.25582 0.96535 1.01027 1.02983 0.85024 0.77932 0.79371 0.77100 1.19571 1.21012 1.21723 1.19591 0.91216 0.85437 1.42271 0.91593 1.42324 1.05576 1.00607 1.89465 1.20901 0.94058 0.85659 0.96654 1.21541 0.92649 0.83581 0.99213 0.93616 1.22588 0.98931 0.98856 0.95300 1.22818 0.96305 0.92431 1.04091 1.22717 0.96716 0.95715 0.87253 1.48673 1.42746 1.17016 1.25871 1.20310 0.78508 0.87760 0.80393 1.90707 1.67079 1.55204 1.34450 1.22221 1.05496 0.93904 0.99783 1.23060 0.98355 0.96727 0.98730 1.23041 0.95371 1.02625 0.98358 0.93653 0.79017 0.96415 0.98191 0.90516 0.90906 0.89850 0.86721 0.87254 0.89816 0.82843 0.89904 0.83943 0.84940 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 7 C -0.25 -15.42 9.99 84.03 0.84 -14.58 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -41.23 5.44 -343.45 -1.87 -43.10 16 10 C 0.16 7.39 5.64 86.38 0.49 7.88 16 11 C 0.13 5.06 2.94 45.34 0.13 5.20 16 12 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.12 -3.50 6.01 31.78 0.19 -3.31 16 14 C -0.12 -2.16 7.08 31.98 0.23 -1.94 16 15 C 0.10 1.78 6.50 86.79 0.56 2.34 16 16 N -0.61 -18.50 3.08 -787.25 -2.42 -20.92 16 17 C 0.54 17.91 7.37 87.66 0.65 18.56 16 18 O -0.59 -26.57 15.44 -3.04 -0.05 -26.62 16 19 C -0.19 -4.05 5.29 -11.54 -0.06 -4.11 16 20 C -0.13 -2.09 10.24 30.62 0.31 -1.78 16 21 C -0.16 -3.07 10.05 30.62 0.31 -2.76 16 22 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.38 21.68 7.39 -92.71 -0.69 21.00 16 24 H 0.02 0.84 8.06 -2.38 -0.02 0.82 16 25 H 0.00 0.00 6.92 -2.38 -0.02 -0.01 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.31 7.80 -2.39 -0.02 1.29 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.15 2.20 7.89 -2.38 -0.02 2.18 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.00 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -79.18 299.30 2.46 -76.72 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.38 Total: 22.39 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.11 Total: 1.82 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -4.01 Total: -124.62 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -79.18 2.46 -76.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483916783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.882 kcal (2) G-P(sol) polarization free energy of solvation -79.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds