Wall clock time and date at job start Sun Mar 29 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 115.55278 * 2 1 4 4 O 1.21275 * 120.00490 * 214.42226 * 3 2 1 5 5 N 1.34779 * 119.99677 * 34.41836 * 3 2 1 6 6 C 1.46501 * 119.99823 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46877 * 180.02562 * 6 5 3 8 8 C 1.53950 * 113.74237 * 86.25986 * 7 6 5 9 9 N 1.47805 * 86.03824 * 90.88049 * 8 7 6 10 10 C 1.36942 * 134.45487 * 204.64668 * 9 8 7 11 11 H 1.08002 * 119.99602 * 179.86453 * 10 9 8 12 12 C 1.38807 * 120.00184 * 359.86555 * 10 9 8 13 13 N 1.31617 * 119.99858 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47017 * 89.99413 * 14 12 10 16 16 H 1.48498 * 109.47093 * 210.00245 * 14 12 10 17 17 H 1.48508 * 109.46865 * 329.99904 * 14 12 10 18 18 C 1.47582 * 91.05413 * 24.54887 * 9 8 7 19 19 C 1.52998 * 117.50168 * 145.67254 * 2 1 3 20 20 C 1.52998 * 117.50032 * 214.33265 * 2 1 3 21 21 H 1.08990 * 109.47428 * 85.58011 * 1 2 3 22 22 H 1.09001 * 109.46845 * 205.58370 * 1 2 3 23 23 H 1.09001 * 109.46902 * 325.58256 * 1 2 3 24 24 H 0.97000 * 120.00410 * 0.02562 * 5 3 2 25 25 H 1.08998 * 109.47568 * 60.00247 * 6 5 3 26 26 H 1.08998 * 109.47248 * 299.99470 * 6 5 3 27 27 H 1.09002 * 112.94408 * 314.66403 * 7 6 5 28 28 H 1.08999 * 113.76704 * 205.14826 * 8 7 6 29 29 H 1.09002 * 113.76463 * 336.53620 * 8 7 6 30 30 H 0.97002 * 120.00155 * 180.02562 * 13 12 10 31 31 H 1.08999 * 113.77186 * 221.15323 * 18 9 8 32 32 H 1.09004 * 113.76624 * 89.74800 * 18 9 8 33 33 H 1.08999 * 117.50206 * 215.00477 * 19 2 1 34 34 H 1.08996 * 117.49870 * 0.02562 * 19 2 1 35 35 H 1.09007 * 117.49717 * 359.97438 * 20 2 1 36 36 H 1.09000 * 117.50288 * 144.99480 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6020 2.3829 0.6598 6 6 2.2336 3.7048 0.6593 7 6 1.3803 4.6779 1.4753 8 6 1.6925 4.6622 2.9828 9 7 2.6678 5.7328 2.6877 10 6 3.8109 6.1824 3.2931 11 1 4.3615 7.0061 2.8633 12 6 4.2619 5.5794 4.4592 13 7 3.5912 4.5753 4.9827 14 14 5.8207 6.1932 5.2856 15 1 5.4769 7.2569 6.2630 16 1 6.4829 5.0671 5.9917 17 1 6.7416 6.7435 4.2586 18 6 1.9170 6.1209 1.4778 19 6 2.2365 -1.1207 0.7653 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3634 0.0792 -1.0245 22 1 -0.3633 -0.9269 0.4438 23 1 -0.3633 0.8478 0.5809 24 1 0.7678 2.2442 1.1349 25 1 2.3184 4.0666 -0.3653 26 1 3.2267 3.6331 1.1028 27 1 0.3170 4.6056 1.2466 28 1 0.8599 4.9862 3.6072 29 1 2.1481 3.7338 3.3273 30 1 3.9061 4.1541 5.7979 31 1 2.5516 6.3550 0.6231 32 1 1.1505 6.8743 1.6594 33 1 3.1714 -0.8747 1.2688 34 1 1.6113 -1.8583 1.2684 35 1 1.6112 -1.8583 -1.2686 36 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494556845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:10 Heat of formation + Delta-G solvation = 37.801925 kcal Electronic energy + Delta-G solvation = -17019.625529 eV Core-core repulsion = 14313.354964 eV Total energy + Delta-G solvation = -2706.270565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95225 -38.17134 -36.50908 -34.22321 -32.12775 -29.23212 -28.19462 -26.02755 -24.79061 -23.10197 -22.51185 -21.94953 -19.59576 -18.32203 -16.85697 -16.72225 -15.85359 -15.18805 -14.77779 -14.72511 -14.04034 -13.83009 -13.56987 -13.09809 -12.67703 -12.54164 -12.36816 -12.22456 -11.55014 -11.43539 -11.10469 -10.99293 -10.69650 -10.58720 -10.48533 -10.05393 -9.89710 -9.73930 -9.52728 -9.38659 -8.77235 -8.63666 -6.85207 -5.73872 -3.05715 2.73502 3.39726 3.41738 3.46669 3.48640 3.84054 4.48857 4.57563 4.75923 4.81797 4.93042 5.22266 5.36645 5.38378 5.51131 5.57419 5.59142 5.60565 5.71844 5.84440 6.00448 6.00707 6.11155 6.17888 6.34816 6.53780 6.65214 6.70575 6.84587 7.20758 7.33099 7.58761 7.83353 8.01153 8.52431 9.07701 9.74209 10.62723 11.43344 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.005789 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.042385 B = 4835.518050 C = 5259.668326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.167 4.167 3 C 0.546 3.454 4 O -0.545 6.545 5 N -0.717 5.717 6 C 0.148 3.852 7 C -0.155 4.155 8 C 0.166 3.834 9 N -0.611 5.611 10 C -0.222 4.222 11 H 0.079 0.921 12 C -0.008 4.008 13 N -0.922 5.922 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.127 3.873 19 C -0.150 4.150 20 C -0.147 4.147 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.398 0.602 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 -9.509 -8.942 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 C 0.331 3.669 4 O -0.423 6.423 5 N -0.367 5.367 6 C 0.025 3.975 7 C -0.175 4.175 8 C 0.040 3.960 9 N -0.338 5.338 10 C -0.350 4.350 11 H 0.097 0.903 12 C -0.204 4.204 13 N -0.569 5.569 14 Si 0.741 3.259 15 H -0.217 1.217 16 H -0.217 1.217 17 H -0.206 1.206 18 C 0.000 4.000 19 C -0.187 4.187 20 C -0.184 4.184 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.233 0.767 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.694 -9.345 -9.120 15.156 hybrid contribution 0.300 0.454 0.950 1.095 sum -7.394 -8.890 -8.171 14.159 Atomic orbital electron populations 1.21338 0.90642 1.02618 1.02390 1.21508 0.95801 0.89936 1.09756 1.19401 0.84303 0.84680 0.78489 1.90682 1.23271 1.83898 1.44465 1.45971 1.27200 1.10466 1.53094 1.21080 0.97457 0.79921 0.99019 1.23450 0.97344 0.96769 0.99953 1.22351 0.90394 0.94240 0.88979 1.46048 1.23691 1.37553 1.26487 1.19034 0.97740 1.13291 1.04901 0.90303 1.24756 0.99179 0.98606 0.97885 1.69807 1.40004 1.25028 1.22100 0.86140 0.82720 0.77651 0.79404 1.21680 1.21660 1.20597 1.22521 0.93646 0.92674 0.91127 1.23103 1.02315 0.98356 0.94935 1.23011 1.02654 0.98301 0.94467 0.91739 0.91590 0.91750 0.76699 0.92322 0.90037 0.91599 0.95595 0.90691 0.93738 0.93642 0.94542 0.88171 0.87901 0.88200 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.79 37.16 0.36 -0.65 16 2 C -0.17 -2.04 2.61 -155.66 -0.41 -2.45 16 3 C 0.55 9.01 7.39 -10.98 -0.08 8.93 16 4 O -0.55 -11.21 16.26 5.56 0.09 -11.12 16 5 N -0.72 -11.24 5.45 -60.29 -0.33 -11.57 16 6 C 0.15 2.72 5.42 -4.04 -0.02 2.70 16 7 C -0.16 -2.82 3.99 -89.69 -0.36 -3.17 16 8 C 0.17 3.82 7.03 -2.84 -0.02 3.80 16 9 N -0.61 -15.69 3.59 -177.69 -0.64 -16.33 16 10 C -0.22 -6.32 10.70 -15.06 -0.16 -6.49 16 11 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 12 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 13 N -0.92 -27.60 11.39 55.49 0.63 -26.96 16 14 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.13 2.57 8.51 -2.96 -0.03 2.55 16 19 C -0.15 -1.67 9.88 -26.70 -0.26 -1.94 16 20 C -0.15 -1.63 9.77 -26.70 -0.26 -1.89 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 23 H 0.06 0.55 6.39 -51.93 -0.33 0.22 16 24 H 0.40 5.18 6.78 -40.82 -0.28 4.90 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.86 7.98 -51.93 -0.41 1.44 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.92 7.12 -51.93 -0.37 1.55 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.11 1.36 7.67 -51.93 -0.40 0.96 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -33.26 301.27 -7.60 -40.86 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.54 Total: 1.95 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.33 Total: 1.06 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.33 Total: -54.86 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.26 -7.60 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494556845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.663 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds