Wall clock time and date at job start Sun Mar 29 2020 22:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 115.55278 * 2 1 4 4 O 1.21275 * 120.00490 * 214.42226 * 3 2 1 5 5 N 1.34779 * 119.99677 * 34.41836 * 3 2 1 6 6 C 1.46501 * 119.99823 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46877 * 180.02562 * 6 5 3 8 8 C 1.53950 * 113.74237 * 86.25986 * 7 6 5 9 9 N 1.47805 * 86.03824 * 90.88049 * 8 7 6 10 10 C 1.36942 * 134.45487 * 204.64668 * 9 8 7 11 11 H 1.08002 * 119.99602 * 179.86453 * 10 9 8 12 12 C 1.38807 * 120.00184 * 359.86555 * 10 9 8 13 13 N 1.31617 * 119.99858 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47017 * 89.99413 * 14 12 10 16 16 H 1.48498 * 109.47093 * 210.00245 * 14 12 10 17 17 H 1.48508 * 109.46865 * 329.99904 * 14 12 10 18 18 C 1.47582 * 91.05413 * 24.54887 * 9 8 7 19 19 C 1.52998 * 117.50168 * 145.67254 * 2 1 3 20 20 C 1.52998 * 117.50032 * 214.33265 * 2 1 3 21 21 H 1.08990 * 109.47428 * 85.58011 * 1 2 3 22 22 H 1.09001 * 109.46845 * 205.58370 * 1 2 3 23 23 H 1.09001 * 109.46902 * 325.58256 * 1 2 3 24 24 H 0.97000 * 120.00410 * 0.02562 * 5 3 2 25 25 H 1.08998 * 109.47568 * 60.00247 * 6 5 3 26 26 H 1.08998 * 109.47248 * 299.99470 * 6 5 3 27 27 H 1.09002 * 112.94408 * 314.66403 * 7 6 5 28 28 H 1.08999 * 113.76704 * 205.14826 * 8 7 6 29 29 H 1.09002 * 113.76463 * 336.53620 * 8 7 6 30 30 H 0.97002 * 120.00155 * 180.02562 * 13 12 10 31 31 H 1.08999 * 113.77186 * 221.15323 * 18 9 8 32 32 H 1.09004 * 113.76624 * 89.74800 * 18 9 8 33 33 H 1.08999 * 117.50206 * 215.00477 * 19 2 1 34 34 H 1.08996 * 117.49870 * 0.02562 * 19 2 1 35 35 H 1.09007 * 117.49717 * 359.97438 * 20 2 1 36 36 H 1.09000 * 117.50288 * 144.99480 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6020 2.3829 0.6598 6 6 2.2336 3.7048 0.6593 7 6 1.3803 4.6779 1.4753 8 6 1.6925 4.6622 2.9828 9 7 2.6678 5.7328 2.6877 10 6 3.8109 6.1824 3.2931 11 1 4.3615 7.0061 2.8633 12 6 4.2619 5.5794 4.4592 13 7 3.5912 4.5753 4.9827 14 14 5.8207 6.1932 5.2856 15 1 5.4769 7.2569 6.2630 16 1 6.4829 5.0671 5.9917 17 1 6.7416 6.7435 4.2586 18 6 1.9170 6.1209 1.4778 19 6 2.2365 -1.1207 0.7653 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3634 0.0792 -1.0245 22 1 -0.3633 -0.9269 0.4438 23 1 -0.3633 0.8478 0.5809 24 1 0.7678 2.2442 1.1349 25 1 2.3184 4.0666 -0.3653 26 1 3.2267 3.6331 1.1028 27 1 0.3170 4.6056 1.2466 28 1 0.8599 4.9862 3.6072 29 1 2.1481 3.7338 3.3273 30 1 3.9061 4.1541 5.7979 31 1 2.5516 6.3550 0.6231 32 1 1.1505 6.8743 1.6594 33 1 3.1714 -0.8747 1.2688 34 1 1.6113 -1.8583 1.2684 35 1 1.6112 -1.8583 -1.2686 36 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494556845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:09 Heat of formation + Delta-G solvation = 14.939801 kcal Electronic energy + Delta-G solvation = -17020.616905 eV Core-core repulsion = 14313.354964 eV Total energy + Delta-G solvation = -2707.261941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22476 -39.82130 -37.62512 -35.73250 -34.17839 -30.66859 -29.42597 -27.69624 -26.54141 -24.67157 -23.52981 -23.35072 -21.03749 -19.79722 -18.74796 -17.92619 -17.29640 -16.96882 -16.42147 -16.00388 -15.67706 -15.15862 -15.01139 -14.48428 -14.07618 -13.83698 -13.45813 -13.34480 -13.18712 -12.95197 -12.85896 -12.52769 -12.37633 -12.29651 -11.82904 -11.52158 -11.48360 -11.29898 -10.97020 -10.88861 -10.74861 -10.07250 -8.89887 -7.91088 -5.22587 1.42401 1.44487 1.49273 1.52635 2.14483 2.46590 2.87786 3.29937 3.43215 3.64276 3.70446 3.82648 3.92844 3.97396 4.03642 4.49463 4.59477 4.71493 4.74816 4.80956 4.88375 4.90996 4.96255 4.97737 5.00384 5.08110 5.22941 5.25087 5.32877 5.42033 5.55327 5.62849 5.95972 6.57243 6.92989 7.24843 7.61553 8.57285 9.25803 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.005789 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.042385 B = 4835.518050 C = 5259.668326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.174 4.174 3 C 0.536 3.464 4 O -0.595 6.595 5 N -0.707 5.707 6 C 0.158 3.842 7 C -0.120 4.120 8 C 0.162 3.838 9 N -0.645 5.645 10 C -0.233 4.233 11 H 0.080 0.920 12 C -0.068 4.068 13 N -0.952 5.952 14 Si 0.974 3.026 15 H -0.284 1.284 16 H -0.296 1.296 17 H -0.271 1.271 18 C 0.125 3.875 19 C -0.147 4.147 20 C -0.141 4.141 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.414 0.586 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.116 0.884 28 H 0.025 0.975 29 H 0.040 0.960 30 H 0.247 0.753 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -9.989 -9.797 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.324 3.676 4 O -0.477 6.477 5 N -0.358 5.358 6 C 0.034 3.966 7 C -0.139 4.139 8 C 0.037 3.963 9 N -0.372 5.372 10 C -0.362 4.362 11 H 0.098 0.902 12 C -0.261 4.261 13 N -0.602 5.602 14 Si 0.802 3.198 15 H -0.210 1.210 16 H -0.222 1.222 17 H -0.196 1.196 18 C 0.000 4.000 19 C -0.184 4.184 20 C -0.179 4.179 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.087 0.913 24 H 0.252 0.748 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.133 0.867 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.687 -9.810 -9.991 17.026 hybrid contribution 0.915 0.621 1.164 1.605 sum -8.772 -9.189 -8.828 15.470 Atomic orbital electron populations 1.21389 0.87555 1.04125 1.03417 1.21585 0.97818 0.87318 1.11013 1.20277 0.83729 0.86297 0.77310 1.90653 1.25554 1.84911 1.46549 1.45854 1.27547 1.09494 1.52934 1.20762 0.95289 0.81579 0.98930 1.23148 0.99795 0.95153 0.95822 1.22293 0.89583 0.92173 0.92239 1.46445 1.23929 1.38724 1.28120 1.19412 0.99034 1.12821 1.04886 0.90220 1.25562 1.02378 0.99222 0.98930 1.69986 1.41548 1.26342 1.22291 0.85145 0.79340 0.76894 0.78408 1.21039 1.22214 1.19618 1.22769 0.93622 0.94424 0.89203 1.23202 1.01650 0.98388 0.95204 1.23093 1.02031 0.98303 0.94435 0.90785 0.89195 0.91335 0.74838 0.91401 0.95317 0.86651 0.95732 0.94193 0.94432 0.92894 0.92128 0.90790 0.84578 0.84747 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.79 71.98 0.70 -0.86 16 2 C -0.17 -3.97 2.61 -52.93 -0.14 -4.11 16 3 C 0.54 17.67 7.39 87.66 0.65 18.32 16 4 O -0.60 -25.32 16.26 -3.01 -0.05 -25.37 16 5 N -0.71 -21.61 5.45 -463.05 -2.53 -24.14 16 6 C 0.16 5.78 5.42 86.38 0.47 6.25 16 7 C -0.12 -4.12 3.99 -10.13 -0.04 -4.16 16 8 C 0.16 7.50 7.03 86.44 0.61 8.11 16 9 N -0.64 -33.28 3.59 -716.10 -2.57 -35.85 16 10 C -0.23 -13.45 10.70 84.03 0.90 -12.55 16 11 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 12 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 13 N -0.95 -58.65 11.39 21.65 0.25 -58.40 16 14 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 C 0.12 4.84 8.51 86.49 0.74 5.58 16 19 C -0.15 -3.07 9.88 30.62 0.30 -2.77 16 20 C -0.14 -2.91 9.77 30.62 0.30 -2.61 16 21 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.09 0.91 7.90 -2.39 -0.02 0.89 16 23 H 0.07 0.93 6.39 -2.39 -0.02 0.91 16 24 H 0.41 9.93 6.78 -92.71 -0.63 9.30 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.04 2.11 7.12 -2.39 -0.02 2.10 16 30 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.14 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 Total: -1.00 -75.54 301.27 2.52 -73.02 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.44 Total: 13.72 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.95 Total: 7.67 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -4.85 Total: -118.39 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.54 2.52 -73.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494556845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.957 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds