Wall clock time and date at job start Sun Mar 29 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32991 * 119.99775 * 2 1 4 4 C 1.50694 * 120.00344 * 359.97438 * 3 2 1 5 5 C 1.47104 * 119.99490 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99722 * 264.43414 * 5 3 2 7 7 N 1.34780 * 120.00368 * 84.44234 * 5 3 2 8 8 C 1.46502 * 119.99819 * 5.08346 * 7 5 3 9 9 C 1.46498 * 120.00273 * 185.09227 * 7 5 3 10 10 C 1.53499 * 114.20559 * 239.99972 * 9 7 5 11 11 N 1.47065 * 87.97970 * 220.14452 * 10 9 7 12 12 C 1.36942 * 136.04967 * 207.07942 * 11 10 9 13 13 H 1.07999 * 120.00507 * 354.86919 * 12 11 10 14 14 C 1.38811 * 119.99597 * 174.86791 * 12 11 10 15 15 N 1.31616 * 119.99952 * 184.47390 * 14 12 11 16 16 Si 1.86804 * 120.00111 * 4.47526 * 14 12 11 17 17 H 1.48503 * 109.47256 * 174.25214 * 16 14 12 18 18 H 1.48504 * 109.46892 * 294.25386 * 16 14 12 19 19 H 1.48499 * 109.47205 * 54.25021 * 16 14 12 20 20 C 1.47060 * 87.88734 * 27.34220 * 11 10 9 21 21 H 1.08998 * 109.46721 * 299.99694 * 1 2 3 22 22 H 1.09001 * 109.46988 * 60.00017 * 1 2 3 23 23 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99654 * 180.02562 * 2 1 3 25 25 H 1.08991 * 109.47916 * 275.08203 * 4 3 2 26 26 H 1.09003 * 109.46926 * 35.08175 * 4 3 2 27 27 H 1.09000 * 109.47149 * 155.07771 * 4 3 2 28 28 H 1.09004 * 109.47109 * 275.02727 * 8 7 5 29 29 H 1.08999 * 109.46889 * 35.02405 * 8 7 5 30 30 H 1.08994 * 109.47111 * 155.02399 * 8 7 5 31 31 H 1.09008 * 113.28005 * 13.05794 * 9 7 5 32 32 H 1.08991 * 113.47131 * 105.36251 * 10 9 7 33 33 H 1.09002 * 113.51329 * 334.93134 * 10 9 7 34 34 H 0.97000 * 119.99830 * 5.00984 * 15 14 12 35 35 H 1.09000 * 113.47246 * 87.44149 * 20 11 10 36 36 H 1.09000 * 113.46442 * 217.87863 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2514 1.2536 1.0475 7 7 4.3165 1.0389 -1.1626 8 6 3.5879 1.0285 -2.4335 9 6 5.7772 0.9265 -1.1547 10 6 6.4988 2.0488 -1.9136 11 7 7.4298 1.0324 -2.4265 12 6 8.7292 1.0140 -2.8583 13 1 9.2833 1.9372 -2.9432 14 6 9.3344 -0.1913 -3.1868 15 7 10.6081 -0.2197 -3.5171 16 14 8.3409 -1.7730 -3.1603 17 1 9.1721 -2.8885 -3.6800 18 1 7.9251 -2.0731 -1.7666 19 1 7.1355 -1.6149 -4.0132 20 6 6.3492 0.0460 -2.2778 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0470 -0.9354 -0.0004 25 1 1.1584 2.7258 -1.0242 26 1 0.5083 2.3511 0.5898 27 1 2.0438 3.2375 0.4325 28 1 3.2508 0.0149 -2.6507 29 1 2.7252 1.6910 -2.3631 30 1 4.2454 1.3717 -3.2321 31 1 6.1880 0.7192 -0.1665 32 1 6.9724 2.7805 -1.2592 33 1 5.8891 2.5104 -2.6903 34 1 11.1418 0.5884 -3.4609 35 1 5.6995 -0.0210 -3.1504 36 1 6.6955 -0.9285 -1.9336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499650280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:34 Heat of formation + Delta-G solvation = 47.547533 kcal Electronic energy + Delta-G solvation = -17243.514591 eV Core-core repulsion = 14537.666627 eV Total energy + Delta-G solvation = -2705.847964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17418 -38.24337 -35.69305 -34.52638 -32.25296 -29.60916 -28.07732 -26.99648 -26.13940 -25.40744 -23.13283 -20.92320 -19.13895 -18.27924 -17.54255 -16.87658 -16.38370 -15.40291 -15.36570 -14.57556 -14.01840 -13.93101 -13.47099 -13.16434 -12.89043 -12.71609 -12.62525 -12.25495 -12.19835 -12.09129 -11.91684 -11.59447 -11.48918 -11.32131 -10.58798 -10.40562 -9.75373 -9.35571 -9.18430 -9.09875 -8.95177 -8.31079 -7.19892 -6.34256 -3.27744 1.67599 2.66467 3.16856 3.37714 3.41378 3.62810 4.45786 4.56245 4.76487 4.81926 5.00986 5.08160 5.14660 5.18108 5.29150 5.36890 5.43649 5.52112 5.54507 5.65132 5.66793 5.73511 5.83247 5.86976 6.11956 6.20600 6.25917 6.35393 6.43630 6.49324 6.93097 7.04515 7.54313 8.20194 8.26396 8.93874 9.45432 10.29606 11.17348 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042336 B = 0.006001 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.213607 B = 4664.446720 C = 4932.468445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C -0.161 4.161 4 C -0.106 4.106 5 C 0.554 3.446 6 O -0.539 6.539 7 N -0.596 5.596 8 C 0.079 3.921 9 C 0.100 3.900 10 C 0.112 3.888 11 N -0.620 5.620 12 C -0.303 4.303 13 H 0.085 0.915 14 C -0.022 4.022 15 N -0.932 5.932 16 Si 1.072 2.928 17 H -0.294 1.294 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.083 3.917 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.047 0.953 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.124 1.909 3.700 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C -0.164 4.164 4 C -0.163 4.163 5 C 0.342 3.658 6 O -0.416 6.416 7 N -0.328 5.328 8 C -0.064 4.064 9 C -0.004 4.004 10 C -0.015 4.015 11 N -0.349 5.349 12 C -0.429 4.429 13 H 0.102 0.898 14 C -0.221 4.221 15 N -0.574 5.574 16 Si 0.905 3.095 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.217 1.217 20 C -0.043 4.043 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.415 0.352 3.815 21.755 hybrid contribution -0.047 1.672 0.108 1.676 sum -21.462 2.024 3.922 21.912 Atomic orbital electron populations 1.20860 0.92154 1.02630 1.02221 1.23190 0.96371 0.96845 0.97750 1.21412 0.92840 0.97075 1.05058 1.20704 0.99604 0.93693 1.02274 1.18608 0.87636 0.75992 0.83608 1.90804 1.69912 1.49445 1.31419 1.47955 1.07281 1.71472 1.06106 1.21786 0.96851 1.01715 0.86092 1.23570 0.76878 0.99134 1.00770 1.22746 0.90693 0.93394 0.94716 1.45790 1.07149 1.05024 1.76907 1.20154 0.83432 0.96033 1.43289 0.89754 1.25708 0.97570 1.00327 0.98507 1.70914 1.05613 1.31064 1.49840 0.83693 0.73957 0.76154 0.75670 1.22102 1.21924 1.21678 1.23270 0.90325 0.95601 0.95130 0.91146 0.91130 0.91753 0.86827 0.90905 0.90940 0.91550 0.92546 0.91393 0.90128 0.85814 0.93133 0.94273 0.92826 0.93519 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 8.98 36.01 0.32 -0.50 16 2 C -0.12 -1.22 9.97 -36.13 -0.36 -1.58 16 3 C -0.16 -1.88 4.05 -102.85 -0.42 -2.30 16 4 C -0.11 -0.95 9.33 36.00 0.34 -0.61 16 5 C 0.55 8.86 7.02 -12.66 -0.09 8.77 16 6 O -0.54 -10.83 16.64 5.27 0.09 -10.74 16 7 N -0.60 -9.34 3.12 -174.95 -0.55 -9.88 16 8 C 0.08 0.94 8.90 59.85 0.53 1.47 16 9 C 0.10 1.93 4.55 -67.69 -0.31 1.62 16 10 C 0.11 2.30 8.23 -8.51 -0.07 2.23 16 11 N -0.62 -15.57 3.69 -184.64 -0.68 -16.25 16 12 C -0.30 -8.86 11.09 -15.06 -0.17 -9.02 16 13 H 0.08 2.58 8.05 -52.49 -0.42 2.16 16 14 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 15 N -0.93 -29.63 13.70 55.49 0.76 -28.87 16 16 Si 1.07 27.06 25.12 -169.99 -4.27 22.79 16 17 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.29 -7.00 6.30 56.52 0.36 -6.64 16 19 H -0.29 -6.77 6.70 56.52 0.38 -6.39 16 20 C 0.08 1.78 5.33 -8.38 -0.04 1.73 16 21 H 0.07 0.44 7.41 -51.93 -0.38 0.06 16 22 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.11 1.19 8.05 -52.48 -0.42 0.77 16 25 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 26 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.64 6.80 -51.93 -0.35 0.29 16 30 H 0.08 1.01 5.98 -51.93 -0.31 0.70 16 31 H 0.12 2.60 7.33 -51.92 -0.38 2.22 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.74 7.04 -51.93 -0.37 0.37 16 34 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 35 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 36 H 0.06 1.34 4.02 -51.93 -0.21 1.13 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -34.31 290.26 -5.90 -40.21 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.26 Total: -2.69 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.36 Total: 1.05 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.47 Total: -55.00 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.27 Total: 22.79 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.31 -5.90 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499650280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.758 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds