Wall clock time and date at job start Sun Mar 29 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32991 * 119.99775 * 2 1 4 4 C 1.50694 * 120.00344 * 359.97438 * 3 2 1 5 5 C 1.47104 * 119.99490 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99722 * 264.43414 * 5 3 2 7 7 N 1.34780 * 120.00368 * 84.44234 * 5 3 2 8 8 C 1.46502 * 119.99819 * 5.08346 * 7 5 3 9 9 C 1.46498 * 120.00273 * 185.09227 * 7 5 3 10 10 C 1.53499 * 114.20559 * 239.99972 * 9 7 5 11 11 N 1.47065 * 87.97970 * 220.14452 * 10 9 7 12 12 C 1.36942 * 136.04967 * 207.07942 * 11 10 9 13 13 H 1.07999 * 120.00507 * 354.86919 * 12 11 10 14 14 C 1.38811 * 119.99597 * 174.86791 * 12 11 10 15 15 N 1.31616 * 119.99952 * 184.47390 * 14 12 11 16 16 Si 1.86804 * 120.00111 * 4.47526 * 14 12 11 17 17 H 1.48503 * 109.47256 * 174.25214 * 16 14 12 18 18 H 1.48504 * 109.46892 * 294.25386 * 16 14 12 19 19 H 1.48499 * 109.47205 * 54.25021 * 16 14 12 20 20 C 1.47060 * 87.88734 * 27.34220 * 11 10 9 21 21 H 1.08998 * 109.46721 * 299.99694 * 1 2 3 22 22 H 1.09001 * 109.46988 * 60.00017 * 1 2 3 23 23 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99654 * 180.02562 * 2 1 3 25 25 H 1.08991 * 109.47916 * 275.08203 * 4 3 2 26 26 H 1.09003 * 109.46926 * 35.08175 * 4 3 2 27 27 H 1.09000 * 109.47149 * 155.07771 * 4 3 2 28 28 H 1.09004 * 109.47109 * 275.02727 * 8 7 5 29 29 H 1.08999 * 109.46889 * 35.02405 * 8 7 5 30 30 H 1.08994 * 109.47111 * 155.02399 * 8 7 5 31 31 H 1.09008 * 113.28005 * 13.05794 * 9 7 5 32 32 H 1.08991 * 113.47131 * 105.36251 * 10 9 7 33 33 H 1.09002 * 113.51329 * 334.93134 * 10 9 7 34 34 H 0.97000 * 119.99830 * 5.00984 * 15 14 12 35 35 H 1.09000 * 113.47246 * 87.44149 * 20 11 10 36 36 H 1.09000 * 113.46442 * 217.87863 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2514 1.2536 1.0475 7 7 4.3165 1.0389 -1.1626 8 6 3.5879 1.0285 -2.4335 9 6 5.7772 0.9265 -1.1547 10 6 6.4988 2.0488 -1.9136 11 7 7.4298 1.0324 -2.4265 12 6 8.7292 1.0140 -2.8583 13 1 9.2833 1.9372 -2.9432 14 6 9.3344 -0.1913 -3.1868 15 7 10.6081 -0.2197 -3.5171 16 14 8.3409 -1.7730 -3.1603 17 1 9.1721 -2.8885 -3.6800 18 1 7.9251 -2.0731 -1.7666 19 1 7.1355 -1.6149 -4.0132 20 6 6.3492 0.0460 -2.2778 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0470 -0.9354 -0.0004 25 1 1.1584 2.7258 -1.0242 26 1 0.5083 2.3511 0.5898 27 1 2.0438 3.2375 0.4325 28 1 3.2508 0.0149 -2.6507 29 1 2.7252 1.6910 -2.3631 30 1 4.2454 1.3717 -3.2321 31 1 6.1880 0.7192 -0.1665 32 1 6.9724 2.7805 -1.2592 33 1 5.8891 2.5104 -2.6903 34 1 11.1418 0.5884 -3.4609 35 1 5.6995 -0.0210 -3.1504 36 1 6.6955 -0.9285 -1.9336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499650280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:34 Heat of formation + Delta-G solvation = 22.961319 kcal Electronic energy + Delta-G solvation = -17244.580729 eV Core-core repulsion = 14537.666627 eV Total energy + Delta-G solvation = -2706.914102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54350 -39.78026 -36.62381 -35.91617 -34.38149 -30.45880 -29.73566 -28.04772 -27.13294 -27.09562 -24.70684 -22.42461 -20.72343 -19.66924 -19.27823 -18.12644 -17.61879 -17.11731 -16.64457 -15.83593 -15.74336 -15.15907 -14.59269 -14.52089 -13.97759 -13.76664 -13.62247 -13.37592 -13.36691 -13.29693 -13.26035 -13.00418 -12.86015 -12.39420 -12.26036 -12.17925 -11.42406 -11.17260 -11.12911 -10.87585 -9.87296 -9.67965 -9.28033 -8.69907 -5.55306 0.86503 1.34597 1.44307 1.45682 1.65142 1.94011 2.49679 2.94983 3.15035 3.45694 3.55102 4.01200 4.06275 4.18151 4.26191 4.41113 4.44117 4.49912 4.54076 4.60163 4.68783 4.77581 4.87235 4.91825 4.96122 5.01225 5.08662 5.11125 5.19347 5.47482 5.57547 5.73629 5.88055 6.33138 6.62823 7.03528 7.24194 8.16307 8.84143 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042336 B = 0.006001 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.213607 B = 4664.446720 C = 4932.468445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.181 4.181 4 C -0.101 4.101 5 C 0.550 3.450 6 O -0.591 6.591 7 N -0.594 5.594 8 C 0.072 3.928 9 C 0.120 3.880 10 C 0.114 3.886 11 N -0.653 5.653 12 C -0.294 4.294 13 H 0.052 0.948 14 C -0.080 4.080 15 N -0.967 5.967 16 Si 1.109 2.891 17 H -0.300 1.300 18 H -0.277 1.277 19 H -0.255 1.255 20 C 0.084 3.916 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 1.298 3.223 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.123 4.123 3 C -0.184 4.184 4 C -0.157 4.157 5 C 0.341 3.659 6 O -0.472 6.472 7 N -0.325 5.325 8 C -0.070 4.070 9 C 0.014 3.986 10 C -0.012 4.012 11 N -0.382 5.382 12 C -0.421 4.421 13 H 0.070 0.930 14 C -0.272 4.272 15 N -0.612 5.612 16 Si 0.935 3.065 17 H -0.228 1.228 18 H -0.204 1.204 19 H -0.180 1.180 20 C -0.041 4.041 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.093 0.907 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.763 -0.222 3.324 25.978 hybrid contribution 1.226 1.945 0.305 2.319 sum -24.538 1.724 3.629 24.864 Atomic orbital electron populations 1.20940 0.89345 1.03853 1.03482 1.23444 0.98248 0.95714 0.94878 1.21307 0.89896 0.99058 1.08169 1.20743 0.99525 0.91531 1.03930 1.19408 0.89526 0.74375 0.82625 1.90776 1.71401 1.51714 1.33271 1.47971 1.05618 1.71054 1.07847 1.22078 0.97353 1.03753 0.83789 1.22876 0.79514 0.97479 0.98742 1.22911 0.90022 0.93109 0.95171 1.45778 1.07013 1.08079 1.77310 1.20006 0.85563 0.94821 1.41717 0.92962 1.27068 0.97736 1.03772 0.98589 1.71016 1.06901 1.30467 1.52805 0.83279 0.73923 0.72257 0.77027 1.22832 1.20404 1.17958 1.23430 0.89330 0.94653 0.96671 0.90239 0.89176 0.90705 0.87774 0.88676 0.88942 0.93378 0.90700 0.88327 0.90508 0.88217 0.94099 0.91411 0.94344 0.90567 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.98 71.24 0.64 -0.42 16 2 C -0.10 -1.69 9.97 24.52 0.24 -1.45 16 3 C -0.18 -3.71 4.05 -18.71 -0.08 -3.78 16 4 C -0.10 -1.45 9.33 71.23 0.66 -0.79 16 5 C 0.55 16.79 7.02 86.57 0.61 17.40 16 6 O -0.59 -23.88 16.64 -4.07 -0.07 -23.94 16 7 N -0.59 -17.24 3.12 -825.68 -2.57 -19.82 16 8 C 0.07 1.41 8.90 127.77 1.14 2.54 16 9 C 0.12 4.46 4.55 45.55 0.21 4.67 16 10 C 0.11 4.60 8.23 83.18 0.68 5.28 16 11 N -0.65 -32.47 3.69 -738.09 -2.72 -35.19 16 12 C -0.29 -17.54 11.09 84.03 0.93 -16.61 16 13 H 0.05 3.36 8.05 -2.91 -0.02 3.34 16 14 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 15 N -0.97 -63.39 13.70 21.65 0.30 -63.09 16 16 Si 1.11 53.96 25.12 68.60 1.72 55.68 16 17 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 18 H -0.28 -12.69 6.30 99.48 0.63 -12.06 16 19 H -0.25 -10.83 6.70 99.48 0.67 -10.17 16 20 C 0.08 3.43 5.33 83.26 0.44 3.88 16 21 H 0.08 0.63 7.41 -2.39 -0.02 0.61 16 22 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 23 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 24 H 0.10 1.89 8.05 -2.91 -0.02 1.86 16 25 H 0.09 0.92 7.83 -2.39 -0.02 0.90 16 26 H 0.09 0.96 6.70 -2.39 -0.02 0.94 16 27 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.37 6.80 -2.39 -0.02 1.36 16 30 H 0.08 1.60 5.98 -2.39 -0.01 1.59 16 31 H 0.10 4.24 7.33 -2.38 -0.02 4.22 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.38 7.04 -2.39 -0.02 2.36 16 34 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 35 H 0.08 2.71 6.38 -2.39 -0.02 2.69 16 36 H 0.05 2.18 4.02 -2.39 -0.01 2.17 16 Total: -1.00 -77.61 290.26 3.51 -74.10 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.91 Total: 5.92 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.95 Total: 6.34 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -5.00 Total: -118.10 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.94 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 1.72 Total: 55.68 kcal Total: -77.61 3.51 -74.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499650280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.057 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds